View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_65 (Length: 230)
Name: NF4285_high_65
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_65 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 27093610 - 27093817
Alignment:
| Q |
23 |
tgagatagggaaagagaatgggtgttaatttccacacacgttactgataattgttgttttctcagaaccctttctttggagtcttgtggctaatattatg |
122 |
Q |
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| T |
27093610 |
tgagatagagaaagagaatgggtgttaatttccacacacgttactgataattgttgttttctcagaaccctttctttggagtcttgtggctgatattatg |
27093709 |
T |
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| Q |
123 |
cttcacccaaatcttcatgtttcaaaggtgaagctttggaacctgagattttttcccctaaatgtctacacataatgctttggaagttgtttaacgtaga |
222 |
Q |
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| T |
27093710 |
cttcacccaaatcttcatgtttcaaaggtgaagctttggaacctgagatttttttccctaaatgtctacacataatgctttggaagttgtttaacgtaga |
27093809 |
T |
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| Q |
223 |
taggtcaa |
230 |
Q |
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| T |
27093810 |
taggtcaa |
27093817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 27095236 - 27095341
Alignment:
| Q |
108 |
gtggctaatattatgcttcacccaaatcttcatgtttcaaaggtgaagctttggaacctgaga--ttttttcc-cctaaatgtctacacataatgctttg |
204 |
Q |
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||||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||| ||| ||||||||| |
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| T |
27095236 |
gtggccaatattttgcttcacccaaatcttcatgcttcaaaggtgaa------gaacctgagaatttttttccttctaaatgtctatacagaatgctttg |
27095329 |
T |
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| Q |
205 |
gaagttgtttaa |
216 |
Q |
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| T |
27095330 |
gaagttgtttaa |
27095341 |
T |
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