View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_66 (Length: 230)
Name: NF4285_high_66
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_66 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 25359809 - 25360060
Alignment:
| Q |
1 |
aatcattcacatttcacaccctcaattaatcccataaccccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaa |
100 |
Q |
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| T |
25359809 |
aatcattcacatttcacaccctcaattaatcccataaccccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaa |
25359908 |
T |
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| Q |
101 |
ttaaattagaatataaatgaaatgaaattattaggaagttgacttggcataaa----------------------cacacaacattaaacaaaaatgtta |
178 |
Q |
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| T |
25359909 |
ttaaattagaaaataaatgaaatgaaactattaggaagttgacttggcataaacacacaacatgaaacaaaaaaacacacaacatgaaacaaaaatgtta |
25360008 |
T |
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| Q |
179 |
aatatagaattcttggcctacttgaaaagaagcatgaggggagctaaatgct |
230 |
Q |
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| T |
25360009 |
aatatagaactcttggcctacttgaaaagaagcattaggggagctaaatgct |
25360060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 25360775 - 25360975
Alignment:
| Q |
1 |
aatcattcacatttcacaccctcaattaatcccataaccccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaa |
100 |
Q |
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| T |
25360775 |
aatcattcacatttcacacccttaattgatcccaaaaccccaaatttctctatttcataccctaa--tctaaaattgatagacatgcatgaagaaaggaa |
25360872 |
T |
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| Q |
101 |
ttaaattagaatataaatgaaatgaaattattaggaagttgacttggcataaacacacaacattaaacaaaaatgttaaatatagaattcttggcctact |
200 |
Q |
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| T |
25360873 |
tcaaattagaatatgaacgaaataaaact-ttagtaa-ttggcttggcttaaacacacaacatgaaacaaaaatgttgaatatagaactcttggcccact |
25360970 |
T |
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| Q |
201 |
tgaaa |
205 |
Q |
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||||| |
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| T |
25360971 |
tgaaa |
25360975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 25363013 - 25363079
Alignment:
| Q |
40 |
ccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaattaaat |
106 |
Q |
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| T |
25363013 |
ccaaatttctttatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
25363079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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