View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_high_70 (Length: 223)
Name: NF4285_high_70
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_70 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49438525 - 49438303
Alignment:
| Q |
1 |
catttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagcttaagcaagttgactaaagcagaaatgccttacacttattgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49438525 |
catttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagcttaagcaagttgactaaagcagaaatgccttacacttattgtc |
49438426 |
T |
|
| Q |
101 |
attttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatgaatacactgatggtgaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49438425 |
attttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatgaatacactgatggtgaaat |
49438326 |
T |
|
| Q |
201 |
gtgttgattttgtttttgctttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49438325 |
gtgttgattttgtttttgctttt |
49438303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 49415378 - 49415481
Alignment:
| Q |
82 |
atgccttacacttattgtcattttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatg |
181 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
49415378 |
atgccttccactttttgtcattttccattgaaagcacttcataatgtgaaggaactgtacatagaaataaatcaggtttgaaatttattattgctatatg |
49415477 |
T |
|
| Q |
182 |
aata |
185 |
Q |
| |
|
|||| |
|
|
| T |
49415478 |
aata |
49415481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University