View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_74 (Length: 212)
Name: NF4285_high_74
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_74 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 42769154 - 42769352
Alignment:
| Q |
14 |
atcaaagggttgagaaagaagtggtgatttttggagttttacagtagtgtcaaggatgaaaggtagaagaactatttgtcctgtatttgggtctggaaat |
113 |
Q |
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| T |
42769154 |
atcaaagggttgagaaagaagtggtgatttttggagttttacagtagtgtcaaggatgaaaggtagaagaactatttgtcctgtatttgggtctggaaat |
42769253 |
T |
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| Q |
114 |
gatatcaaagcattagttcctgtcatttgtggtgaagtagggttgataccaaatccaacccaaccagaaggtgaaatgaaagtgccaaagaaaattagt |
212 |
Q |
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| T |
42769254 |
gatatcaaagcattagttcctgtcatttgtggtgaagtagggttgataccaaatccaacccaaccagaaggtgaaatgaaagtgccaaagaaaattagt |
42769352 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 2452352 - 2452186
Alignment:
| Q |
39 |
gatttttggagttttacagtagtgtcaaggatgaaaggtagaagaactatttgtcctgtatttgggtctggaaatgatatcaaagcattagttcctgtca |
138 |
Q |
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| T |
2452352 |
gatttttggagcttcacattcgggtctagaatgtaaggaagtaggactatttggcctgaagttgggtcagaaaaggctattaaagcacgagttcctgtca |
2452253 |
T |
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| Q |
139 |
tttgtggtgaagtagggttgataccaaatccaacccaaccagaaggtgaaatgaaagtgccaaagaa |
205 |
Q |
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| T |
2452252 |
tctccgatgaagttgggttgattccccatccaacccatccagaaggtgaaatgaaggttccaaagaa |
2452186 |
T |
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