View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_high_9 (Length: 474)
Name: NF4285_high_9
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 39504338 - 39504777
Alignment:
| Q |
16 |
atgaagttgcttgggaaagcacttagttgttaaattgtttgcaaagtctctgccaccaaccagggcactgttatgaagaactaggataagacacagtcca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39504338 |
atgaagttgcttgggaaagcacttagttgttaaattgtttgcaaagtctctgccaccaaccagggcactgttatgaagaactaggataagaaacagtcca |
39504437 |
T |
|
| Q |
116 |
attatgatgaaattacagttttcatgcaacatatttgtggtaagtaatcattggtttgatttatgaataaaaaatacaaaagtaaagtaaatggaaaagg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39504438 |
attatgatgaaattacagttttcatgcaacatatttgtggtaaataatcattggtttgatttatgaataaaaaata--aaagtaaagtaaatggaaaagg |
39504535 |
T |
|
| Q |
216 |
atgtacctgggagcaagcaatggcggaagacagagggttttcatagtaaaacaaggatgaggaagaaacttaagtggtcggttaagatcataaaactgtt |
315 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39504536 |
atgtacctgggagcaagcaacggcggaagacagagggttttcatagtaaaacaaggatgaggaagaaacttaagtggtcggttaagatcataaaattgtt |
39504635 |
T |
|
| Q |
316 |
gtctgtcttcaatttaactataaatagcatttaaggttgttggtgataatgaggtaagccttcactaccaaannnnnnnnnnnnnnnnnngagaggtacc |
415 |
Q |
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| T |
39504636 |
gtctgtcttcaatttaactataaatagcatttaaggttgttggtgataatgaggtaagccttcactaccaaattttttgttttgctttttgagtggtacc |
39504735 |
T |
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| Q |
416 |
taacttaaagtgagtccatgactatgttgcataatctaaact |
457 |
Q |
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| T |
39504736 |
taacttaaagtgagtccatgactatgttgcataatctaaact |
39504777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 24367875 - 24367745
Alignment:
| Q |
16 |
atgaagttgcttgggaaagcacttagttgttaaattgtttgcaaagtctctgccaccaaccagggcactgttatgaagaactaggataagacacagtcca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24367875 |
atgaagttgcttgggaaagcacttagttgttaaattgtttgcaaagtctctgccaccaaccagggcactgttatgaagaactaggataagacacagtcca |
24367776 |
T |
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| Q |
116 |
attatgatgaaattacagttttcatgcaaca |
146 |
Q |
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| T |
24367775 |
attatgatgaaattacagttttcatgcaaca |
24367745 |
T |
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