View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_low_1 (Length: 974)
Name: NF4285_low_1
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 873; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 873; E-Value: 0
Query Start/End: Original strand, 19 - 967
Target Start/End: Complemental strand, 3401332 - 3400397
Alignment:
| Q |
19 |
gaggatactcgaaagactttcgtttctcatctctatgctgcactcacaaatgcagcaatccgcacttttcgtgacgacaaggagcttagaaagggaaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3401332 |
gaggatactcgaaagactttcgtttctcatctctatgctgcactcacaaatgcagcaatccgcacttttcgtgacgacaaggagcttagaaagggaaata |
3401233 |
T |
|
| Q |
119 |
agctggaaccagaaataaagagagcaatagaagggtctcggatatctattgttgttctctcaccttactatgcaggatctagctggtgtcttaacgaact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3401232 |
agctggaaccagaaataaagagagcaatagaagggtctcggatatctatcgttgttctctcaccttactatgcaggatctagctggtgtcttaacgaact |
3401133 |
T |
|
| Q |
219 |
tgtacacatcctgcattgcagccatacttatgggcaggtggttatgcccgtattttaccatgttgacccatcgcatgtccgtaaactggaaggtaatttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3401132 |
tgtacacatcctgcattgcagccatacttatgggcaggtggttatgcccgtattttaccatgttgacccatcgcatgtccgtaagctggaaggtaatttt |
3401033 |
T |
|
| Q |
319 |
ggaacaatttttgaactccatgcaattcatagagagcatgaactgttgtccaagtggaagaccgtactcaatgaagtttcaaatctgtctggctgggatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3401032 |
ggaacaatttttgaactccatgcaattcatagagagcatgaactgttgtccaagtggaagaccgtactcactgaagtttcaaatctgtctggctgggatc |
3400933 |
T |
|
| Q |
419 |
tcaacaatatcaggtaaggtaatcaatacttatatttgatagtaaagcgtactttcttttgagattatttcatgattgattaatgctcattctttgtctt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3400932 |
tcaacaatatcaggtaaggtaatcaatact-------------aaagcgtaatttcttttgagattatgtcatgattgattaatgctcattctttgtctt |
3400846 |
T |
|
| Q |
519 |
tgtaactgttattattacccaagtaatgaaggtgaactagtgaagcaaattgtcgaggacactttggcaaaactagatatctcattgttgtctattaccg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3400845 |
tgtaactgttattattacccaagtaatgaaggtgaactagtgaagcaaattgttgaggacactttggcaaaactagatatctcattgttgtctattactg |
3400746 |
T |
|
| Q |
619 |
aatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatggggaatgggtgg |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3400745 |
aatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatggggaatgggtgg |
3400646 |
T |
|
| Q |
719 |
atccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaagggtagagcaagtttcatcgaaagtattcgagaagtttgtgat |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3400645 |
atccgggaaaacaaccacggccaaagctatctacaatcaaatccgttctagatttaagggtagagcaagtttcatcgaaagtattcgagaagtttgtgat |
3400546 |
T |
|
| Q |
819 |
aataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaaataaaacaagagattcatagcattgcctcagggataactaaga |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3400545 |
aataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaaataaaacaagagattcatagcattgcctcagggataactaaga |
3400446 |
T |
|
| Q |
919 |
ttgagaaaagacttcgaggacaaacagtttttgtcatacttgatgatgt |
967 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3400445 |
ttgagaaaagacttcgaggacaaacagtttttgtcatacttgatgatgt |
3400397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 107 - 942
Target Start/End: Original strand, 31173305 - 31174126
Alignment:
| Q |
107 |
gaaagggaaataagctggaaccagaaataaagagagcaatagaagggtctcggatatctattgttgttctctcaccttactatgcaggatctagctggtg |
206 |
Q |
| |
|
|||||||| | ||||||| |||| || || ||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
31173305 |
gaaagggagaaaagctgggaccacaactagagaaagcaattgaagggtctctgatatctattgttgttctctcaccggactatgcagaatctagctggtg |
31173404 |
T |
|
| Q |
207 |
tcttaacgaacttgtacacatcctgcattgcagccatacttatgggcaggtggttatgcccgtattttaccatgttgacccatcgcatgtccgtaaactg |
306 |
Q |
| |
|
|||||||||||||||||| ||| || | ||| | |||||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||| | | |
|
|
| T |
31173405 |
tcttaacgaacttgtacatatcttgaaatgccaaaaaacttatggccaggtggtcatgccagtattttatcatgttgacccatcagttgtccgtaagcag |
31173504 |
T |
|
| Q |
307 |
gaaggtaattttggaacaatttttgaactccatgcaattcatagagagcatgaactgttgtccaagtggaagaccgtactcaatgaagtttcaaatctgt |
406 |
Q |
| |
|
||| ||||||||| | || |||||| ||| | | | ||| || || |||||||||| ||||| |||| |||||| ||||| ||| | | |
|
|
| T |
31173505 |
acgggtgattttggaaaagccttggaactcactgctacaaaaaaagaagataaattgttgtccaactggaaaaccgcactcaaacaagttgcaactatag |
31173604 |
T |
|
| Q |
407 |
ctggctgggatctcaacaatatcaggtaaggtaatcaatacttatatttgatagtaaagcgtactttcttttgagattatttcatgattgattaatgctc |
506 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||| ||||||||| || || ||| | ||||| |||| ||| || |||| |
|
|
| T |
31173605 |
ctggctgggattgctacaatatcaggtaa-----tcaatacttatattctttagtaaagcttaactttttt--aaattatgtcataattcat----gctc |
31173693 |
T |
|
| Q |
507 |
attctttgtctttgtaactgttattattacccaagtaatgaaggtgaactagtgaagcaaattgtcgaggacactttggcaaaactagatatctcattgt |
606 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||| ||||||| |||||||||||| |||| || |||| || ||||||||||||||||| |
|
|
| T |
31173694 |
attctttgtctttgtaact---attattacccaaggaataaaggggaactagcgaagcaaattgttgaggccattttgaaaatactagatatctcattgt |
31173790 |
T |
|
| Q |
607 |
tgtctattaccgaatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatg |
706 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
31173791 |
tgtctattactaaatatccgattggattggaatcccgtgtgcaaaaaattaccaagtttattgataatcaatcaaacaaagtctgcatgatagggatatg |
31173890 |
T |
|
| Q |
707 |
gggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaagggtagagcaagtttcatcgaaagtattcga |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||| ||| | |||||| |||||||| | |||||||||||| |
|
|
| T |
31173891 |
gggaatgggtggatccgggaaaacaaccacagccaaagctatctacaataaaatccatcgtaggtttgaaggtagaacaagtttctttgaaagtattcga |
31173990 |
T |
|
| Q |
807 |
gaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaaataaaacaagagattcatagcattgcctcag |
906 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | | |
|
|
| T |
31173991 |
gaagtttgtgataataattctagaggggttattcatttacaacaacaacttcttttagatctcctgcaaataaaacaagagattcatagcattgcattgg |
31174090 |
T |
|
| Q |
907 |
ggataactaagattgagaaaagacttcgaggacaaa |
942 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| |
|
|
| T |
31174091 |
ggatgactaagatagagaaaagacttcgaggacaaa |
31174126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 606 - 861
Target Start/End: Complemental strand, 3288590 - 3288338
Alignment:
| Q |
606 |
ttgtctattaccgaatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatat |
705 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||| ||||| ||||||||| | | |||||||| | ||||||||| |||| ||| ||| |||||| | |
|
|
| T |
3288590 |
ttgtctattaccaaatttccagttggattggagtcccgggtgcaacaagtgattcagtttattcaaaatcaatcaagcaaagtttgtttgacagggatct |
3288491 |
T |
|
| Q |
706 |
ggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaagggtagagcaagtttcatcgaaagtattcg |
805 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||||||||||| ||| ||||| || | ||||| | | ||||||||||| |||| |||| | |
|
|
| T |
3288490 |
ggggaatgggtgggtcggggaaaacaacaacagccaaagctatcttcaatcaaattaatttgaaatttatgcat---gcaagtttcattgaaaatattag |
3288394 |
T |
|
| Q |
806 |
agaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttt |
861 |
Q |
| |
|
|||||||||| || ||| |||||||| |||| | |||||||||||||||||||| |
|
|
| T |
3288393 |
agaagtttgtataaaaaatgatagagggattatacatttacaacaacaacttcttt |
3288338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 685 - 874
Target Start/End: Complemental strand, 3264585 - 3264399
Alignment:
| Q |
685 |
aagtctgtatgatagggatatggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaagggtagagc |
784 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||| | || ||||||||||| |||||||| ||||||||||||||| | | |||| ||| || |
|
|
| T |
3264585 |
aagtttgtatgatgggaatatggggaatgggtgggttgggtaaaacaaccacagccaaagccgtctacaaccaaatccatcgcaaatttgaggata---a |
3264489 |
T |
|
| Q |
785 |
aagtttcatcgaaagtattcgagaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaa |
874 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||| || ||| || ||| |||||| ||||||||| |||||||||| |||| ||||||| |
|
|
| T |
3264488 |
aagtttcatcgaaaatattagagaagtttatgaaaaatatagtactgggattattcatttacaacagcaacttctttcagatatcttgaa |
3264399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 545 - 760
Target Start/End: Complemental strand, 7166863 - 7166648
Alignment:
| Q |
545 |
tgaaggtgaactagtgaagcaaattgtcgaggacactttggcaaaactagatatctcattgttgtctattaccgaatatccggttggattggattcccgt |
644 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||| ||||||||||||||| | | ||| |||||||||| ||||| ||| ||||||||||| || || |
|
|
| T |
7166863 |
tgaagctgaactagtgcagcaaattgttgaggatcttttggcaaaactagacaacgcatccttgtctattatcgaatttccagttggattggaatctcgc |
7166764 |
T |
|
| Q |
645 |
gtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatggggaatgggtggatccgggaaaacaaccacggccaaag |
744 |
Q |
| |
|
|||| || ||| | ||||||| ||| ||| |||| |||||||||||||||||||||||||| | || || ||||||||||| ||||||| |
|
|
| T |
7166763 |
atgcacaaagttattgaatttattgcaactcagccaagcaaagtttgtatgatagggatatggggaatgggcaggtcgggtaaaacaaccacagccaaag |
7166664 |
T |
|
| Q |
745 |
ctatctacaaccaaat |
760 |
Q |
| |
|
| ||||| || ||||| |
|
|
| T |
7166663 |
ccatctataatcaaat |
7166648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 861
Target Start/End: Complemental strand, 3269321 - 3269070
Alignment:
| Q |
607 |
tgtctattaccgaatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatg |
706 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| | | |||||||||||| | | |||||||||| | ||||||| |||| || ||||||||||| || |
|
|
| T |
3269321 |
tgtctattactgaatttccagttggattgcacacacgtgtgcaacaagtgattcagtttattgaaaaacaatcaagcaaagtttgcatgatagggatctg |
3269222 |
T |
|
| Q |
707 |
gggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaagggtagagca-agtttcatcgaaagtattcg |
805 |
Q |
| |
|
||| ||||||||||| || |||||||| || |||| || |||||||||| |||| | | | |||| ||||| || |||||||| |||| |||| | |
|
|
| T |
3269221 |
gggtatgggtggatcaggtaaaacaacaacagccagagatatctacaacaaaattcatcgcaaattt----gtagatcacagtttcattgaaaatattag |
3269126 |
T |
|
| Q |
806 |
agaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttt |
861 |
Q |
| |
|
|||||||| ||| || | ||||||||| ||| || ||||||| |||||||||||| |
|
|
| T |
3269125 |
agaagtttatgaaaaggaaaatagagggattactcatttacaagaacaacttcttt |
3269070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 699 - 760
Target Start/End: Original strand, 13785673 - 13785734
Alignment:
| Q |
699 |
gggatatggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaat |
760 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
13785673 |
gggatctggggtatgggtggatcggggaaaacaaccacagccaaagccatctacaatcaaat |
13785734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 291
Target Start/End: Complemental strand, 3270252 - 3269997
Alignment:
| Q |
36 |
tttcgtttctcatctctatgctgcactcacaaatgcagcaatccgcacttttcgtgacgacaaggagcttagaaagggaaataagctggaaccagaaata |
135 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||| | |||| |||||||| ||||||||| ||||| ||||||| | |||||| ||||||| | |
|
|
| T |
3270252 |
tttcgtttctcatctccatgcagcactctcaaatgctggaatcaacacttttcttgacgacaaaaagcttgaaaagggagaggagctgggaccagaactg |
3270153 |
T |
|
| Q |
136 |
aagagagcaatagaagggtctcggatatctattgttgttctctcaccttactatgcaggatctagctggtgtcttaacgaacttgtacacatcctgcatt |
235 |
Q |
| |
|
| |||||||||||| ||||| || ||||| ||||| |||| |||| |||||| ||||||||||| || |||| ||| || || | | |
|
|
| T |
3270152 |
ttgcgagcaatagaagtttctcgtatttctatcattgttttctccaaaagctatatcacatctagttggtgtcttaaagagcttgaacaaattatgaaat |
3270053 |
T |
|
| Q |
236 |
gcagccatacttatgggcaggtggttatgcccgtattttaccatgttgacccatcg |
291 |
Q |
| |
|
|| || | | |||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
3270052 |
gccgcaaaaattatggacaggtggttatgcccatattttaccacgttgacccatcg |
3269997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 527 - 597
Target Start/End: Complemental strand, 3264785 - 3264715
Alignment:
| Q |
527 |
ttattattacccaagtaatgaaggtgaactagtgaagcaaattgtcgaggacactttggcaaaactagata |
597 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| || |||||||||| | |||| ||||| ||||||||||| |
|
|
| T |
3264785 |
ttattatcacccaaggaatgaaggtgaactaatgcagcaaattgtggcggacgttttggaaaaactagata |
3264715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 3265313 - 3265264
Alignment:
| Q |
22 |
gatactcgaaagactttcgtttctcatctctatgctgcactcacaaatgc |
71 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3265313 |
gatactcgtaagacgttcgtttctcatctatatgctgccctcacaaatgc |
3265264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 3395198 - 3395154
Alignment:
| Q |
22 |
gatactcgaaagactttcgtttctcatctctatgctgcactcaca |
66 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3395198 |
gatactcgcaagacttttgtttctcatctctatgctgctctcaca |
3395154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 901
Target Start/End: Original strand, 20835805 - 20836696
Alignment:
| Q |
19 |
gaggatactcgaaagactttcgtttctcatctctatgctgcactcacaaatgcagcaatccgcacttttcgtgacgacaaggagcttagaaagggaaata |
118 |
Q |
| |
|
||||||||||| || ||| | |||||||||||||||||||||||| ||| ||| | || |||||||| ||| || || |||||| ||||||| | |
|
|
| T |
20835805 |
gaggatactcgcaacactattgtttctcatctctatgctgcactccaaaactcaggagtctacacttttcttgatgatcagaagcttacaaagggagaag |
20835904 |
T |
|
| Q |
119 |
agctggaaccagaaataaagagagcaatagaagggtctcggatatctattgttgttctctcaccttactatgcaggatctagctggtgtcttaacgaact |
218 |
Q |
| |
|
||| | ||||| | ||| || |||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
20835905 |
tgcttggaccagcactaaggaaggcaatagaagagtctaagatatttattgttgttctctcaccggactatgcaggatctagctggtgtcttcgcgaact |
20836004 |
T |
|
| Q |
219 |
tgtacacatcctgcattgcagccatacttatgggcaggtggttatgcccgtattttaccatgttgacccatcgcatgtccgtaaactggaaggtaatttt |
318 |
Q |
| |
|
|||||| ||| || ||||| | | | |||||| | | | ||| | || ||||||||| |||||| |||||| | |||||||| | | ||| ||||| |
|
|
| T |
20836005 |
tgtacatatcatggattgccacgaaagttatggccggatcgttttacctgtattttacggtgttgaaccatcggaggtccgtaagcagtcgggtgatttt |
20836104 |
T |
|
| Q |
319 |
ggaacaatttttgaa-ctccatgcaattcatagagagcatgaactgttgtccaagtggaagaccgtactcaatgaagtttcaaatctgtctggctgggat |
417 |
Q |
| |
|
|||| || ||||| || ||||| | ||||| || |||| |||||| ||||||||||| ||||| |||| |||||| | ||||||||| |
|
|
| T |
20836105 |
ggaa-aagccttgaagctgactgcaacaaaaagagaagatcaactactgtccatgtggaagaccgcactcacaaaagtaggaaatctagccggctgggat |
20836203 |
T |
|
| Q |
418 |
ctcaacaatatcaggtaaggtaatcaatacttatatttgatagtaaagcgta----ctt---tcttttgagattatttcatgattgattaatgctcattc |
510 |
Q |
| |
|
||||| | |||||||| |||||||||||||| ||||||||||| | ||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20836204 |
tacaacattttcaggtaa-----tcaatacttatattcgatagtaaagcattaaagcttaacttttttgagattatgtcatgattgattaatgctcattc |
20836298 |
T |
|
| Q |
511 |
tttgtctttgtaactgtt-------attattacccaagtaatgaaggtgaactagtgaagcaaattgtcgaggacactttggcaaaactagatatctcat |
603 |
Q |
| |
|
|||||||||||||||||| |||||||||| || |||||||||||||||||| ||| |||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
20836299 |
tttgtctttgtaactgtttattattattattaccctaggaatgaaggtgaactagtggagctaattgttgaggacattttgagaaaactagatatctcat |
20836398 |
T |
|
| Q |
604 |
tgttgtctattaccgaatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggat |
703 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||| |||| ||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
20836399 |
tgttgtctattactgaatttccgattggattggaatcccatgtgcaacaaattaccaagattattgatgatcaatcatgcaaagtctgtatcatagggat |
20836498 |
T |
|
| Q |
704 |
atggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaagggtagagcaagtttcatcgaaagtatt |
803 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||| | |||||| |||||||| |||||||| | ||||||||| |
|
|
| T |
20836499 |
atggggaatgggtggattaggcaaaacaaccacggccaaagctctctacaatcaaatccatcgtagattccagggtagaacaagtttccttgaaagtatt |
20836598 |
T |
|
| Q |
804 |
cgagaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaaataaaacaagagattcatagcattgc |
901 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||| | |||||||||| ||||||| || ||||| |
|
|
| T |
20836599 |
agagaagtttgtgataataatagtggaggggttattactttacaagaacaacttcttttagatctccttgaaataaaacagaagattcacagtattgc |
20836696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 483 - 893
Target Start/End: Original strand, 20809916 - 20810333
Alignment:
| Q |
483 |
ttatttcatgattgattaatgctcattctttgtctttgtaactgtt-------attattacccaagtaatgaaggtgaactagtgaagcaaattgtcgag |
575 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||| ||| |
|
|
| T |
20809916 |
ttatgtcatgattgattaatgctcattttttgtctttgtaactgtttattattattattaccgtaggaatgaaggtgaactagtgaagggtattgttgag |
20810015 |
T |
|
| Q |
576 |
gacactttggcaaaactagatatctcattgttgtctattaccgaatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatc |
675 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
20810016 |
tacattttgacaaaactaaatatctcattgttgtctattactgaatatccaattggattggaatcccgtgtgcaacaaattaccaagattattgatgatc |
20810115 |
T |
|
| Q |
676 |
aatcaacagaagtctgtatgatagggatatggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaa |
775 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||| | |||||| | |
|
|
| T |
20810116 |
aatcatggaaagtctgtatcatagggatatggggaatgggtggatcaggcaaaacaaccacggccaaagctctctacaatcaaatccatcgtagattcca |
20810215 |
T |
|
| Q |
776 |
gggtagagcaagtttcatcgaaagtattcgagaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaa |
875 |
Q |
| |
|
||||||| |||||||| | ||||||||| ||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
20810216 |
gggtagaacaagtttcgttgaaagtattagagaagtttgtgataataatagtagaggggctattactttacaaaaacaacttcttttagatctctttgaa |
20810315 |
T |
|
| Q |
876 |
ataaaacaagagattcat |
893 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
20810316 |
ataaagcagaagattcat |
20810333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 20809456 - 20809674
Alignment:
| Q |
19 |
gaggatactcgaaagactttcgtttctcatctctatgctgcactcacaaatgcagcaatccgcacttttcgtgacgacaaggagcttagaaagggaaata |
118 |
Q |
| |
|
||||||||||| || ||| | |||||||||||| ||||||||||| |||| ||| | || |||||||| ||| || || |||||| ||||||| | |
|
|
| T |
20809456 |
gaggatactcgcaacactattgtttctcatctccatgctgcactccaaaattcaggagtcaacacttttcttgatgatcagaagcttaaaaagggagaag |
20809555 |
T |
|
| Q |
119 |
agctggaaccagaaataaagagagcaatagaagggtctcggatatctattgttgttctctcaccttactatgcaggatctagctggtgtcttaacgaact |
218 |
Q |
| |
|
|||| ||||||| | ||| || ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
20809556 |
agcttgaaccagcactaaggatggcaatagaacagtcgaagatatctattgttgttctctcaccgaactatgcaggatctagctggtgtcttgacgaact |
20809655 |
T |
|
| Q |
219 |
tgtacacatcctgcattgc |
237 |
Q |
| |
|
|||||| ||| || ||||| |
|
|
| T |
20809656 |
tgtacatatcatggattgc |
20809674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 7e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 503 - 967
Target Start/End: Complemental strand, 8373968 - 8373504
Alignment:
| Q |
503 |
gctcattctttgtctttgtaactgttattattacccaagtaatgaaggtgaactagtgaagcaaattgtcgaggacactttggcaaaactagatatctca |
602 |
Q |
| |
|
||||||| ||| ||||| ||||| || ||||||||||| ||||||||||| | || || || |||| ||||||| |||| ||||||||||||| ||| |
|
|
| T |
8373968 |
gctcattttttttctttataactattcctattacccaaggaatgaaggtgatttggtacagaaacttgttgaggacattttgacaaaactagatatgtca |
8373869 |
T |
|
| Q |
603 |
ttgttgtctattaccgaatatccggttggattggattcccgtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgataggga |
702 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||| | || || ||| ||||||||| || || || || |||||| ||| |||||||||||| |
|
|
| T |
8373868 |
gtgttgtctattactgaatttccagttggattggaacctcgcgtacaaagcattaccaagattctttatgatgaatcaaggaaagcctgtatgataggat |
8373769 |
T |
|
| Q |
703 |
tatggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaatccgttctagatttaagggtagagcaagtttcatcgaaagtat |
802 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||| | | ||| |||||| | |||||||||| |||||||| |
|
|
| T |
8373768 |
tatggggaatgggtggatccgggaaaactaccttggccaaagctatctacaatcgaatccatcgtgaattccagggtaaaacaagtttcattgaaagtat |
8373669 |
T |
|
| Q |
803 |
tcgagaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaaataaaacaagagattcatagcattgcc |
902 |
Q |
| |
|
|||||||||||||||| |||||| | |||| |||||| |||||| |||||||||||| ||||||| | |||| |||| | |||| ||||||||||| |
|
|
| T |
8373668 |
tcgagaagtttgtgattataatagaaaagggattattcatttacaggaacaacttctttcagatctcctaaaaacaaaagataagatacatagcattgca |
8373569 |
T |
|
| Q |
903 |
tcagggataactaagattgagaaaagacttcgaggacaaacagtttttgtcatacttgatgatgt |
967 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||| ||||| || ||||||||||||| |
|
|
| T |
8373568 |
gtggggataaataagatcgagaaaagacttcagggacaaaaggttttaatcgtacttgatgatgt |
8373504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 8374478 - 8374277
Alignment:
| Q |
19 |
gaggatactcgaaagactttcgtttctcatctctatgctgcactcacaaatgcagcaatccgcacttttcgtgacgacaaggagcttagaaagggaaata |
118 |
Q |
| |
|
||||||||||| | ||| | ||||||||||||||| |||||||| || |||| |||| |||||||| ||| || || ||||| ||||||| | |
|
|
| T |
8374478 |
gaggatactcgcagaactattgtttctcatctctatactgcactctgtaacgcaggaatcaacacttttcttgatgataaaaagcttgcaaagggagaag |
8374379 |
T |
|
| Q |
119 |
agctggaaccagaaataaagagagcaatagaagggtctcggatatctattgttgttctctcaccttactatgcaggatctagctggtgtcttaacgaact |
218 |
Q |
| |
|
|||||| ||||||| || | | ||||||| || ||||| |||| ||||| |||| ||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
8374378 |
agctgggaccagaactatatacagcaataaaaatgtctcatatatttattgctgttttctcacccaactatgcacaatctagctggtgtcttaacgaact |
8374279 |
T |
|
| Q |
219 |
tg |
220 |
Q |
| |
|
|| |
|
|
| T |
8374278 |
tg |
8374277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 543 - 754
Target Start/End: Complemental strand, 14769119 - 14768908
Alignment:
| Q |
543 |
aatgaaggtgaactagtgaagcaaattgtcgaggacactttggcaaaactagatatctcattgttgtctattaccgaatatccggttggattggattccc |
642 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||| |||||||||| | ||||| |||||||| |||| | || ||||| ||||| | | |
|
|
| T |
14769119 |
aatgaaggtgaactagtaaagcaaattgtcggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaacctc |
14769020 |
T |
|
| Q |
643 |
gtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatggggaatgggtggatccgggaaaacaaccacggccaa |
742 |
Q |
| |
|
|||||||| || | || |||||||||| | || |||| | || |||||||||||||| | ||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
14769019 |
gtgtgcaaaaagtggccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctagggaatgggtggatctggtaaaacaaccacagccaa |
14768920 |
T |
|
| Q |
743 |
agctatctacaa |
754 |
Q |
| |
|
| | |||||||| |
|
|
| T |
14768919 |
atccatctacaa |
14768908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 661 - 761
Target Start/End: Complemental strand, 32413046 - 32412946
Alignment:
| Q |
661 |
agtttattgatcatcaatcaacagaagtctgtatgatagggatatggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaaccaaat |
760 |
Q |
| |
|
||||||||||| ||||||||| |||| || ||||||||||| ||||||||||| ||||| || ||||||||||| || ||||| ||||| || ||||| |
|
|
| T |
32413046 |
agtttattgatgatcaatcaaataaagtttgcatgatagggatttggggaatggggggatcaggtaaaacaaccacagcaaaagccatctataatcaaat |
32412947 |
T |
|
| Q |
761 |
c |
761 |
Q |
| |
|
| |
|
|
| T |
32412946 |
c |
32412946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 779 - 931
Target Start/End: Complemental strand, 31060789 - 31060637
Alignment:
| Q |
779 |
tagagcaagtttcatcgaaagtattcgagaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaaata |
878 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||||| ||||||||| || |||| |||||| ||||||| |||| |||||| ||||| | |||||| |
|
|
| T |
31060789 |
tagaacaagtttcattgaaagtattcgataagtttttgataataactgtaaagggattattcaattacaactacaaattctttcagatccactaaaaata |
31060690 |
T |
|
| Q |
879 |
aaacaagagattcatagcattgcctcagggataactaagattgagaaaagact |
931 |
Q |
| |
|
|| | |||| |||||||||| | || ||||||||||| ||||||||||| |
|
|
| T |
31060689 |
aaggacaagatacatagcattggatggggtataactaagatcgagaaaagact |
31060637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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