View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_10 (Length: 488)
Name: NF4285_low_10
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 130 - 475
Target Start/End: Complemental strand, 42118450 - 42118106
Alignment:
| Q |
130 |
catgtaattggttttcctcacatgttcagattgcnnnnnnnccttaaatactttgtgaattgcttgttacgcggatccataaagtggtgaatatgatcaa |
229 |
Q |
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| T |
42118450 |
catgtaattggttttcctcacatgttcaaattgctttttttccttaaatactttgtgaattgtttgttacgcggatccataaagtggtgaatatgatcaa |
42118351 |
T |
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| Q |
230 |
tctgaactggtatttaatccaaattaaagtctatcaaagtaacacaaaattgaattcatttctcttctctaaccgttttcgtcatcaccatgtcttcacc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42118350 |
tctgaactggtatttaatccaaattaaagtctatcaaagtaacacaaaattgaattcatttctcttctctaaccgttttcgtcatcaccatgtcttcacc |
42118251 |
T |
|
| Q |
330 |
gcaacaaaactctgtccttccgtcctcttcctccgcaaatgcatcccatctggtcaccgctgctccagtgacgaaagggttagtgnnnnnnnnacaaata |
429 |
Q |
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| T |
42118250 |
gcaacaaaactctgtccttccgtcctcttcctccgcaaatgcatcccatccggtcaccgctgctccagtgacgaaagggttagtgttttttttacaaat- |
42118152 |
T |
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| Q |
430 |
aaatacaagtattcttggtctcttgttttgcctcaaataatttatt |
475 |
Q |
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| T |
42118151 |
aaatacaagttttcttggtctcttgttttgcctcaaataatttatt |
42118106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42118569 - 42118513
Alignment:
| Q |
19 |
aatagcagttaagaaggtcaaataatagtaactctagctatgaatcgtatcgtattc |
75 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42118569 |
aataacagttaagaaggtcaaataatagtaactctagctatgaatcgtatcgtattc |
42118513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 39612271 - 39612236
Alignment:
| Q |
19 |
aatagcagttaagaaggtcaaataatagtaactcta |
54 |
Q |
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| T |
39612271 |
aatagcagttaagaaggtcaaataatagtaactcta |
39612236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 39612063 - 39612018
Alignment:
| Q |
187 |
aattgcttgttacgcggatccataaagtggtgaatatgatcaatctga |
234 |
Q |
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| T |
39612063 |
aattgcttgttacgcgtatccataa--tggtgtatatgatcaatctga |
39612018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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