View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_13 (Length: 467)
Name: NF4285_low_13
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 40 - 449
Target Start/End: Original strand, 45729381 - 45729790
Alignment:
| Q |
40 |
gacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcgcagctgccttcatcggaatcctcaccggccttgac |
139 |
Q |
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| T |
45729381 |
gacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcgcagctgccttcatcggaatcctcaccggccttgac |
45729480 |
T |
|
| Q |
140 |
gactatctcttcgcatatggcgttgctcggcttccagtttccacttctgccttaataatagcatctcagcttggtttcactgcatttttcgcttttctta |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45729481 |
gactatctcttcgcatatggcgttgctcggcttccagtttccacttctgccttaataatagcatctcagcttggtttcactgcgtttttcgcttttctta |
45729580 |
T |
|
| Q |
240 |
ttgtgaaagagaaatttacagcttttactgtaaacgccattgttttgcttacggttggagctggtgttttggctatgcatacgagtagtgatcgtcctgc |
339 |
Q |
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| T |
45729581 |
ttgtgaaagagaaatttacagcttttactgtaaacgccgttgttttgcttacggttggagctggtgttttggctatgcatacgagtagtgatcgtcctgc |
45729680 |
T |
|
| Q |
340 |
tggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggttgagttggtttataag |
439 |
Q |
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| T |
45729681 |
tggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggttgagttggtttataag |
45729780 |
T |
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| Q |
440 |
aagattaaac |
449 |
Q |
| |
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|||||||||| |
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| T |
45729781 |
aagattaaac |
45729790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 44 - 449
Target Start/End: Original strand, 45725196 - 45725601
Alignment:
| Q |
44 |
accatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcgcagctgccttcatcggaatcctcaccggccttgacgact |
143 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||| |||||||| | |
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| T |
45725196 |
accatctccatcgcctcagaaaaacaaaatataatctccatgaaaccacctattttctttgcagccgcctttgtcggaatcctcaccggtcttgacgatt |
45725295 |
T |
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| Q |
144 |
atctcttcgcatatggcgttgctcggcttccagtttccacttctgccttaataatagcatctcagcttggtttcactgcatttttcgcttttcttattgt |
243 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||||| |||| |
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| T |
45725296 |
atctctacgcatatggcgttgctcggcttccggtttccacttcttccttaattatagcatctcagcttggtttcaccgcgtttttcgcttttcttcttgt |
45725395 |
T |
|
| Q |
244 |
gaaagagaaatttacagcttttactgtaaacgccattgttttgcttacggttggagctggtgttttggctatgcatacgagtagtgatcgtcctgctggt |
343 |
Q |
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|||| ||||||||||||| ||||| ||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45725396 |
gaaacagaaatttacagcatttaccgtaaacgccgtttttttgcttactgttggtgctggtgttttggctatgcatacgagtagtgatcgtcctgctggt |
45725495 |
T |
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| Q |
344 |
gtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggttgagttggtttataagaaga |
443 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
45725496 |
gtttctgcaaaacaatatgcgattggtttttcaaccacggttgctgcatctgcattgtatggatttgttttgcctgcggttgagttggtttataagaaga |
45725595 |
T |
|
| Q |
444 |
ttaaac |
449 |
Q |
| |
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|||||| |
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|
| T |
45725596 |
ttaaac |
45725601 |
T |
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