View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_15 (Length: 453)
Name: NF4285_low_15
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 138 - 437
Target Start/End: Complemental strand, 29611761 - 29611464
Alignment:
| Q |
138 |
gagctggatcatgtcttcaatgagattttgcatctttctccatatgatattactaatatcttgttggatatatgtgagcaatcaaaagtgtcaagtgcat |
237 |
Q |
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| T |
29611761 |
gagctggatcatgtcttcaatgagattttgcatctttctccatatgatattactaatatcttgttggatat--gtgagcaatcaaaagtgtcaagtgcat |
29611664 |
T |
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| Q |
238 |
actgttctgcaagaaatcttgtatttccaatcaccaaagccatgttggggaggtttttaaggagattcatcattaatggtcttgaatataggatcaagaa |
337 |
Q |
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| T |
29611663 |
actgttctgcaagaaatcttgtatttccaatcaccaaagccatgttagggaggtttttaaggagattcatcattaatggtcttgaatataggatcaagaa |
29611564 |
T |
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| Q |
338 |
tgtgttcagtgtatacatgtatcttgaatatgggaccaagaacgtgttcatgcgcttggagttgggcaggttttttctattgataattgtacaattattg |
437 |
Q |
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| T |
29611563 |
tgtgttcagtgtatacatgtatcttgaatatgggaccaagaacgtgttcatgctcttggagttgggcaggttttttctattgataattgtacaattattg |
29611464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29611898 - 29611821
Alignment:
| Q |
1 |
tctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatccaccatgaatgc |
78 |
Q |
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| T |
29611898 |
tctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatccaccatgaatgc |
29611821 |
T |
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