View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_17 (Length: 435)
Name: NF4285_low_17
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 37359542 - 37359967
Alignment:
| Q |
1 |
aatgatgtttaaatctcataagcattaagcaagcttcaatttggtcagaattaattccagaaaataaaatattgcagaaatccttgatctttggaacaca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37359542 |
aatgatttttaaatctcataagcattaagcaagcttcaatttggttagaattaattccagaaaataaaatattgcagaaatccttgatctttggaacaca |
37359641 |
T |
|
| Q |
101 |
gttttgtcattattatatttgccataatttatatatgagcgtgtcatttcagtgtgtcatcacaaaatgtaactaagagtgacatacaataagctgcctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
37359642 |
gttttgtcattattatatttgccataatttatatatgagtgtgtcatttcagtgtgtcatcacaaaatgtaactaaaagtgacatacaacaagctgcctt |
37359741 |
T |
|
| Q |
201 |
tccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37359742 |
tccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcaacgtctccttgct |
37359841 |
T |
|
| Q |
301 |
cacggatatgaggtataaattttgaaaggaactattatttgtggatgcttttactttccgtgttagcaatacttttgttatagatatagattgatttatt |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37359842 |
cacggatatgaggtataaatactgaaaggaactattatttgtggatgcttttactttccgtgttagcaatacttttgttatagatatagattgatttatt |
37359941 |
T |
|
| Q |
401 |
tgtttctacatttgtaggatgatgtc |
426 |
Q |
| |
|
||||||||||||||||| ||| |||| |
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|
| T |
37359942 |
tgtttctacatttgtagtatgttgtc |
37359967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 37368522 - 37368097
Alignment:
| Q |
1 |
aatgatgtttaaatctcataagcattaagcaagcttcaatttggtcagaattaattccagaaaataaaatattgcagaaatccttgatctttggaacaca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
37368522 |
aatgatttttaaatctcataagcattaagcaagcttcaatttggttagaattaattccagaaaataaaatattgcagaaatcattgatctttggaacaca |
37368423 |
T |
|
| Q |
101 |
gttttgtcattattatatttgccataatttatatatgagcgtgtcatttcagtgtgtcatcacaaaatgtaactaagagtgacatacaataagctgcctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
37368422 |
gttttgtcattattatatttgccataatttatatatgagtgtgtcatttcagtgtgtcatcacaaaatgtaactaaaagtgacatacaacaagctgcctt |
37368323 |
T |
|
| Q |
201 |
tccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37368322 |
tccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcaacgtctccttgct |
37368223 |
T |
|
| Q |
301 |
cacggatatgaggtataaattttgaaaggaactattatttgtggatgcttttactttccgtgttagcaatacttttgttatagatatagattgatttatt |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37368222 |
cacggatatgaggtataaatactgaaaggaactattatttgtggatgcttttactttccgtgttagcaatacttttgttatagatatagattgatttatt |
37368123 |
T |
|
| Q |
401 |
tgtttctacatttgtaggatgatgtc |
426 |
Q |
| |
|
||||||||||||||||| ||| |||| |
|
|
| T |
37368122 |
tgtttctacatttgtagtatgttgtc |
37368097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 146 - 409
Target Start/End: Original strand, 37381842 - 37382106
Alignment:
| Q |
146 |
atttcagtgtgtcatcacaaaatgtaactaagagtgacatacaataagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataat |
245 |
Q |
| |
|
||||||||||||||||| |||| || || ||||| ||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37381842 |
atttcagtgtgtcatcaagaaatttatctgagagtaacatacagcaagtaggcttgccaccaagaggttggaattcctatgatgccttttcctggataat |
37381941 |
T |
|
| Q |
246 |
ttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgctcacggatatgaggtataaattttgaaaggaactattatttgtgga |
345 |
Q |
| |
|
||||||| |||| |||||||| ||||||||| | ||||||||||||||| | | || ||||| ||||||||||| |||| ||||||| || |||| |
|
|
| T |
37381942 |
ttctgaacaagagttcttacagaatgctgaaattatttctcagcgtctccgtccacatggatacgaggtataaataccgaaacgaactatagcttatgga |
37382041 |
T |
|
| Q |
346 |
tgcttttacttt-ccgtgttagcaatacttttgttatagatatagattgatttatttgtttctac |
409 |
Q |
| |
|
|| ||| ||||| | | |||| | |||||| |||||| ||||||||||||||||||| |||||| |
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|
| T |
37382042 |
tggtttcactttactgcattagtagtactttggttatatatatagattgatttatttgcttctac |
37382106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 37374562 - 37374691
Alignment:
| Q |
202 |
ccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||| || | |||||||||||||||| || |
|
|
| T |
37374562 |
ccaccaagaggttggaattcctatgatgcattttcctggataatttctgaacaagaattcttacagaatgctcaaattgtttctcagcgtctccgtgtgt |
37374661 |
T |
|
| Q |
302 |
acggatatgaggtataaattttgaaaggaa |
331 |
Q |
| |
|
| ||||||||||||||||| ||||||||| |
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|
| T |
37374662 |
atggatatgaggtataaatactgaaaggaa |
37374691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 37390621 - 37390736
Alignment:
| Q |
18 |
ataagcattaagcaagcttcaatttggtcagaattaattccagaaaataaaatattgcagaaatccttgatctttggaacacagttttgtcattattata |
117 |
Q |
| |
|
|||| |||||||||| ||||||||||| || ||||||||||||||||||||||||||| | |||| || | |||||||| | || || ||||||||||| |
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|
| T |
37390621 |
ataatcattaagcaaacttcaatttggccaaaattaattccagaaaataaaatattgctcagatccgtggtatttggaaccctgtgttatcattattata |
37390720 |
T |
|
| Q |
118 |
tttgccataatttata |
133 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
37390721 |
ttaaccataatttata |
37390736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 37381746 - 37381835
Alignment:
| Q |
8 |
tttaaatctcataagcattaagcaagcttcaatttggtcagaattaattccagaaaataaaatattgcagaaatccttgatctttggaac |
97 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||| || | ||||||||| ||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
37381746 |
tttaaaacacataatcattaagcaagcttcaatttggccaaacttaattccaaaaaataaaatattgctgagatccatgatctttggaac |
37381835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 127 - 319
Target Start/End: Complemental strand, 41230764 - 41230572
Alignment:
| Q |
127 |
atttatatatgagcgtgtcatttcagtgtgtcatcacaaaatgtaactaagagtgacatacaataagctgcctttccaccaagaggttggaattcctatg |
226 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||| |||| || || |||||||| ||||| ||||||| || ||||||||||| ||||||||||| | |
|
|
| T |
41230764 |
atttatatttgagtgtgtcatttcagtgtctcatcaagaaatttatctgagagtgacctacaacaagctgctttgccaccaagagggtggaattcctacg |
41230665 |
T |
|
| Q |
227 |
atgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgctcacggatatgaggtataaa |
319 |
Q |
| |
|
|| | ||||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
41230664 |
attcattttcgtggataatatctgaagaagaattcttacagaatgctgaaatagtttctcagcgtcttcatgctcatggatatgaggtataaa |
41230572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 39243094 - 39243208
Alignment:
| Q |
202 |
ccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||| |||| || ||||||||||||| |||| | || |
|
|
| T |
39243094 |
ccaccaagaggttggaattcctatgattgcttttgctggataatttctgaacaagagttcttacaaagtgctcaaatagtttctcagcggctccgcgatc |
39243193 |
T |
|
| Q |
302 |
acggatatgaggtat |
316 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
39243194 |
atggatacgaggtat |
39243208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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