View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_19 (Length: 422)
Name: NF4285_low_19
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 183 - 414
Target Start/End: Original strand, 4364127 - 4364358
Alignment:
| Q |
183 |
gaaaattactacagacaatacactacacttaattcaaacccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtattaa |
282 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364127 |
gaaaattactacagacagtacactacacttaattcaaacccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtattaa |
4364226 |
T |
|
| Q |
283 |
gcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaacaataatcttccat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364227 |
gcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaacaataatcttccat |
4364326 |
T |
|
| Q |
383 |
ttaattttcatcttcatatccatcttcatctc |
414 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4364327 |
ttaattttcatcttcatatccatcttcatctc |
4364358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 183 - 413
Target Start/End: Original strand, 4368516 - 4368745
Alignment:
| Q |
183 |
gaaaattactacagacaatacactacacttaattcaaac-ccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtatta |
281 |
Q |
| |
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|||||| ||| |||||||||||||| |||||||||||| ||||||| || |||||||||| | ||||||||||||||| |||||||||| | ||||| |
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| T |
4368516 |
gaaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaagctataatatta |
4368615 |
T |
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| Q |
282 |
agcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaacaataatcttcca |
381 |
Q |
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||||||| |||||||| | |||| ||||||||||||||||||||||||| |||||| ||||| ||||| | ||||||| ||||||| ||||||||||| |
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| T |
4368616 |
agcttttcacaagtggtatgatgtaaacacccaaaacaaggagtcaaattctagatctttaatctagaatg-ctttcaaaataaaaac-ataatcttcca |
4368713 |
T |
|
| Q |
382 |
tttaattttcatcttcatatccatcttcatct |
413 |
Q |
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|||||||||||||| ||| | ||||||||||| |
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| T |
4368714 |
tttaattttcatctccatcttcatcttcatct |
4368745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 4363962 - 4364063
Alignment:
| Q |
18 |
aatgaacatgtgattaaaatgaagattgtactagggattggaaagggaagtcaacatagtaaagagtaatattataacaaggaaagtaaaatcctacaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4363962 |
aatgaacatgtgattaaaatgaagattgtactagggattggaaagggaagtcaacttagtaaagagtaatattataacaaggaaggtaaaatcctacaaa |
4364061 |
T |
|
| Q |
118 |
at |
119 |
Q |
| |
|
|| |
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|
| T |
4364062 |
at |
4364063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 4358788 - 4358913
Alignment:
| Q |
218 |
aaacccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtatt-aagcttttaacaagtggcaagatgcaaacacccaaa |
316 |
Q |
| |
|
||||||||||| || || |||||||||||||||||| || | |||| |||||||| |||||| ||||||||| |||||| |||| | ||||||||||| |
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| T |
4358788 |
aaacccataggaaagtcgtacacaattcataagtcagaattaacaa-cttaagctatagtatttaagcttttagcaagtgacaagctctaaacacccaaa |
4358886 |
T |
|
| Q |
317 |
acaaggagtcaaatactagatatttaa |
343 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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|
| T |
4358887 |
acaaggagtcaaattctagatatttaa |
4358913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 4388433 - 4388491
Alignment:
| Q |
237 |
acacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaacaagt |
295 |
Q |
| |
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||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |
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|
| T |
4388433 |
acacaattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagt |
4388491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 4375758 - 4375818
Alignment:
| Q |
237 |
acacaattcataagtcacaaattacaaacttaagc--ttgagtattaagcttttaacaagt |
295 |
Q |
| |
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|||||||||||||||||||||||| || ||||||| | |||||||||||||||| |||| |
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| T |
4375758 |
acacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagt |
4375818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 5727095 - 5727059
Alignment:
| Q |
237 |
acacaattcataagtcacaaattacaaacttaagctt |
273 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||| |
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| T |
5727095 |
acacaattcataagtcacaaattataaccttaagctt |
5727059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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