View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_low_20 (Length: 420)

Name: NF4285_low_20
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_low_20
NF4285_low_20
[»] chr4 (29 HSPs)
chr4 (216-412)||(35036914-35037111)
chr4 (307-412)||(55272370-55272476)
chr4 (304-412)||(46827700-46827809)
chr4 (305-412)||(711958-712066)
chr4 (307-412)||(17619146-17619252)
chr4 (306-412)||(32728356-32728463)
chr4 (305-412)||(960864-960972)
chr4 (309-411)||(3756242-3756344)
chr4 (96-206)||(35036729-35036845)
chr4 (306-412)||(48435573-48435680)
chr4 (24-104)||(35036636-35036715)
chr4 (309-412)||(38851515-38851619)
chr4 (304-405)||(28988470-28988572)
chr4 (306-386)||(49229684-49229765)
chr4 (343-412)||(19879990-19880060)
chr4 (308-390)||(41878407-41878490)
chr4 (304-390)||(55966362-55966449)
chr4 (305-390)||(25051691-25051777)
chr4 (305-390)||(28982838-28982924)
chr4 (305-405)||(1771267-1771368)
chr4 (309-405)||(41327544-41327641)
chr4 (307-386)||(27550309-27550389)
chr4 (360-412)||(36004110-36004162)
chr4 (304-390)||(27864561-27864648)
chr4 (306-396)||(48463460-48463551)
chr4 (233-271)||(35037203-35037241)
chr4 (309-390)||(43514702-43514784)
chr4 (307-386)||(12496956-12497036)
chr4 (303-390)||(23035976-23036064)
[»] chr3 (20 HSPs)
chr3 (299-412)||(9434116-9434230)
chr3 (305-412)||(10457886-10457994)
chr3 (306-412)||(25996267-25996374)
chr3 (303-412)||(4190259-4190369)
chr3 (305-411)||(52627972-52628079)
chr3 (307-412)||(51757593-51757699)
chr3 (307-412)||(34791829-34791935)
chr3 (304-390)||(24688418-24688505)
chr3 (309-390)||(53581874-53581956)
chr3 (307-406)||(42100688-42100788)
chr3 (308-390)||(42394435-42394518)
chr3 (355-405)||(51249357-51249407)
chr3 (303-390)||(46941049-46941137)
chr3 (305-390)||(47191042-47191127)
chr3 (307-390)||(45126944-45127028)
chr3 (303-390)||(54246164-54246252)
chr3 (308-390)||(54237097-54237180)
chr3 (305-390)||(40808863-40808949)
chr3 (306-390)||(25413680-25413765)
chr3 (307-390)||(36150130-36150214)
[»] chr5 (10 HSPs)
chr5 (306-412)||(17208073-17208180)
chr5 (303-412)||(30622713-30622822)
chr5 (307-412)||(32473388-32473494)
chr5 (303-390)||(7617129-7617217)
chr5 (305-390)||(38470577-38470663)
chr5 (307-390)||(22512305-22512389)
chr5 (305-390)||(18033980-18034066)
chr5 (302-390)||(41334679-41334768)
chr5 (307-390)||(2614665-2614749)
chr5 (307-378)||(33855071-33855143)
[»] chr7 (17 HSPs)
chr7 (307-412)||(31513287-31513393)
chr7 (308-412)||(31408627-31408732)
chr7 (304-412)||(40236916-40237025)
chr7 (304-412)||(27535225-27535334)
chr7 (297-412)||(33384860-33384977)
chr7 (303-390)||(5015391-5015479)
chr7 (306-405)||(9216301-9216400)
chr7 (309-405)||(4638200-4638297)
chr7 (306-390)||(35069720-35069805)
chr7 (307-405)||(42972852-42972951)
chr7 (309-390)||(10573751-10573833)
chr7 (306-390)||(5194247-5194332)
chr7 (306-390)||(24280612-24280697)
chr7 (307-390)||(24001028-24001112)
chr7 (307-390)||(42538447-42538531)
chr7 (306-390)||(43317442-43317527)
chr7 (307-355)||(39998408-39998456)
[»] chr1 (20 HSPs)
chr1 (307-412)||(48119628-48119734)
chr1 (305-412)||(44112675-44112783)
chr1 (307-412)||(35003294-35003400)
chr1 (307-412)||(38335918-38336024)
chr1 (305-412)||(45639726-45639834)
chr1 (306-412)||(38113189-38113296)
chr1 (306-412)||(45705824-45705931)
chr1 (307-412)||(46168383-46168489)
chr1 (306-412)||(45427739-45427846)
chr1 (305-412)||(26585460-26585568)
chr1 (306-412)||(41065152-41065259)
chr1 (307-412)||(35000107-35000213)
chr1 (305-390)||(48498978-48499064)
chr1 (305-363)||(14427345-14427404)
chr1 (303-390)||(5489772-5489860)
chr1 (304-390)||(23989539-23989627)
chr1 (307-390)||(37814778-37814862)
chr1 (307-390)||(43571102-43571186)
chr1 (307-405)||(50448261-50448360)
chr1 (309-390)||(2497578-2497660)
[»] chr8 (17 HSPs)
chr8 (304-412)||(35181513-35181622)
chr8 (305-412)||(34304786-34304894)
chr8 (306-412)||(16603620-16603727)
chr8 (306-412)||(18066712-18066819)
chr8 (303-412)||(16358827-16358938)
chr8 (303-412)||(33629987-33630097)
chr8 (360-412)||(10678146-10678198)
chr8 (306-390)||(2546995-2547080)
chr8 (303-412)||(19386559-19386674)
chr8 (303-390)||(36743499-36743587)
chr8 (309-390)||(26125637-26125719)
chr8 (307-390)||(11582766-11582850)
chr8 (303-390)||(42295191-42295279)
chr8 (104-137)||(10096135-10096168)
chr8 (306-390)||(31384663-31384748)
chr8 (307-390)||(1375542-1375626)
chr8 (307-390)||(29705362-29705446)
[»] chr2 (23 HSPs)
chr2 (304-412)||(43114554-43114663)
chr2 (306-412)||(18491704-18491811)
chr2 (305-412)||(966828-966936)
chr2 (305-412)||(16803966-16804074)
chr2 (305-412)||(16843248-16843356)
chr2 (309-412)||(11825648-11825752)
chr2 (309-412)||(41281968-41282072)
chr2 (307-412)||(12415454-12415560)
chr2 (307-412)||(12427514-12427620)
chr2 (309-412)||(4299414-4299518)
chr2 (309-390)||(6518485-6518566)
chr2 (304-412)||(34895735-34895844)
chr2 (306-412)||(14285675-14285782)
chr2 (344-412)||(4451944-4452013)
chr2 (308-405)||(34817777-34817875)
chr2 (328-412)||(12531657-12531741)
chr2 (308-390)||(19047158-19047241)
chr2 (307-390)||(1750414-1750498)
chr2 (303-390)||(4764742-4764830)
chr2 (304-390)||(12302269-12302356)
chr2 (309-390)||(8896599-8896681)
chr2 (112-141)||(13294249-13294278)
chr2 (306-390)||(42026766-42026853)
[»] scaffold0003 (1 HSPs)
scaffold0003 (309-412)||(45713-45817)
[»] chr6 (17 HSPs)
chr6 (309-412)||(27441544-27441648)
chr6 (305-412)||(33242401-33242509)
chr6 (307-390)||(33253913-33253997)
chr6 (295-390)||(26670025-26670121)
chr6 (304-405)||(3213397-3213499)
chr6 (306-412)||(31109216-31109323)
chr6 (304-390)||(7273351-7273438)
chr6 (309-390)||(24204003-24204085)
chr6 (306-390)||(9698349-9698434)
chr6 (306-390)||(21279928-21280013)
chr6 (306-390)||(21293693-21293778)
chr6 (302-390)||(26466794-26466883)
chr6 (307-390)||(13743237-13743321)
chr6 (307-390)||(13748737-13748821)
chr6 (309-390)||(30735984-30736066)
chr6 (104-141)||(11529644-11529681)
chr6 (303-390)||(7292743-7292831)
[»] scaffold0100 (1 HSPs)
scaffold0100 (307-412)||(35450-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (295-390)||(673-769)
[»] scaffold0038 (1 HSPs)
scaffold0038 (308-390)||(112656-112739)
[»] scaffold0385 (1 HSPs)
scaffold0385 (305-390)||(11249-11335)
[»] scaffold0157 (1 HSPs)
scaffold0157 (307-386)||(23441-23521)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 216 - 412
Target Start/End: Original strand, 35036914 - 35037111
Alignment:
Q  216 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaaggaaaatgt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35036914 agctgccactactagagaaaatacacgaatatagagaaaatacctcaatagctaaatccaattttcaaactattcacaataattttcaaaagaaaaatgt 35037013  T
Q  316 tacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 412  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||    
T  35037014 tacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctttcttctc 35037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 55272476 - 55272370
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 55272377  T
Q  406 tcatctc 412  Q
    |||||||    
T  55272376 tcatctc 55272370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 46827809 - 46827700
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||  ||||||||||    
T  46827809 aaaggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttct 46827710  T
Q  403 ctttcatctc 412  Q
    ||||||||||    
T  46827709 ctttcatctc 46827700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 711958 - 712066
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||  |||| ||||||    
T  711958 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctc 712057  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  712058 tttcatctc 712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 17619252 - 17619146
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||||||||||  ||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 17619153  T
Q  406 tcatctc 412  Q
    |||||||    
T  17619152 tcatctc 17619146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 32728356 - 32728463
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||  |||| |||||||    
T  32728356 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctct 32728455  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  32728456 ttcatctc 32728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 960972 - 960864
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||| | |  | || ||||||    
T  960972 aaggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctc 960873  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  960872 tttcatctc 960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 411
Target Start/End: Complemental strand, 3756344 - 3756242
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctttc 407  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||| ||||| ||||||| ||||||||  |||| ||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-tctttc 3756246  T
Q  408 atct 411  Q
    ||||    
T  3756245 atct 3756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 35036729 - 35036845
Alignment:
Q  96 cactttttaattgcagggtaattttgtaagtttcatttaattaactnnnnnnnctaaaatcccttttcaatgt-at-----tattaagctaacaactaat 189  Q
    |||||||| |||||||||||||||||||||||||||||||||||||       | |||||| ||||||||| | ||     |||||||||||||||||||    
T  35036729 cactttttgattgcagggtaattttgtaagtttcatttaattaactaaaaaaacaaaaatctcttttcaatatcatggatgtattaagctaacaactaat 35036828  T
Q  190 ataatttcatactagta 206  Q
    |||||||||||||||||    
T  35036829 ataatttcatactagta 35036845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 48435680 - 48435573
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    |||||| ||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||||  |||| ||| |||    
T  48435680 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatct 48435581  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  48435580 ttcatctc 48435573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 35036636 - 35036715
Alignment:
Q  24 agtttactcccacccaaaaacataaagcaagtaattgaatccacttccacttgnnnnnnnactgaaaaaactcacttttta 104  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||    
T  35036636 agtttactcccacccaaaaacataaagcgagtaattgaatccacttccacttg-tttttaactgaaaaaactcacttttta 35036715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 412
Target Start/End: Original strand, 38851515 - 38851619
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctctttc 407  Q
    ||||||||||||||| |  |||||| ||||||   || ||||||| |||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 38851614  T
Q  408 atctc 412  Q
    |||||    
T  38851615 atctc 38851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 28988470 - 28988572
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    ||||||||||||||||||||||| |||||  |||||||   |||||||| |||||||| || |||||||||| ||||||||||||| | ||| | |||||    
T  28988470 aaaggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttct 28988569  T
Q  403 ctt 405  Q
    |||    
T  28988570 ctt 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 49229765 - 49229684
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatct 386  Q
    |||||||||||| |||||||  |||||| ||||||| |||||||||||  ||||||||||||| ||| ||||||||||||||    
T  49229765 aggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 412
Target Start/End: Original strand, 19879990 - 19880060
Alignment:
Q  343 ctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 412  Q
    ||||||||||||| ||  |||| ||||||||||||||||||||||||||  |||| |||||||||||||||    
T  19879990 ctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctc 19880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 41878407 - 41878490
Alignment:
Q  308 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||||  |||||||   ||||||||||| || ||||| ||| |||||| ||| |||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcaca 41878490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 55966449 - 55966362
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||| ||||| |||||  ||||||  | |||||||| |||||| |||| ||| |||||||||| |||||||||||    
T  55966449 aaaggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcaca 55966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 25051691 - 25051777
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||| |||||||||| |||||  | ||||| | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  25051691 aaggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcaca 25051777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 28982924 - 28982838
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||| |||||    ||||| |||||||||| |||||  |||| ||| |||||||||| |||||||||||    
T  28982924 aaggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcaca 28982838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 1771368 - 1771267
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||| |||||  | ||||| | |||||||| |||||| ||||  || |||||| ||| ||||||||||| ||| ||||| ||    
T  1771368 aaggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaaccacattttatc 1771269  T
Q  404 tt 405  Q
    ||    
T  1771268 tt 1771267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 41327641 - 41327544
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||  |||| |||||  || |||| | ||||||||||  ||||| || |||||||||||||||||||||||||| ||| | ||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctctt 41327544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 27550309 - 27550389
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatct 386  Q
    |||||||||||||||||||| |||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 36004162 - 36004110
Alignment:
Q  360 attaaggacattttggtaaattcatctcacagccatattttctctttcatctc 412  Q
    |||| |||||||||| |||||| |||||||| ||||| |||||||||||||||    
T  36004162 attagggacattttgataaatttatctcacaaccatactttctctttcatctc 36004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 27864561 - 27864648
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||| |||||  ||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  27864561 aaaggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcaca 27864648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 48463551 - 48463460
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccata 396  Q
    ||||||||||||||| |||||  ||||  |||||| |  |||||||| |||||| |||| ||| |||||||||| ||||||||||| |||||    
T  48463551 aggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccata 48463460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 35037203 - 35037241
Alignment:
Q  233 aaaatacacgaatatagagaaaatacctcaatagctaaa 271  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35037203 aaaattcacgagtatagagaaaatacctcaatagctaaa 35037241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 43514784 - 43514702
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||| |||||  | ||||||| |||||||||  |||| |||| ||  |||||||||| |||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcaca 43514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 12496956 - 12497036
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatct 386  Q
    ||||||||||| |||||||| |||||  | ||||||| |||||||| |||||| ||||  || |||||||||| |||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 23035976 - 23036064
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||   |||||  | ||||| ||||||||||||| ||  |||| ||| ||||| |||| |||||||||||    
T  23035976 aaaaggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcaca 23036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 9434116 - 9434230
Alignment:
Q  299 tttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatat 397  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||     
T  9434116 tttcaaaaggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatac 9434215  T
Q  398 tttctctttcatctc 412  Q
    |||||||||||||||    
T  9434216 tttctctttcatctc 9434230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 10457994 - 10457886
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    ||||||||||||||||||||||  ||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||    
T  10457994 aaggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctc 10457895  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  10457894 tttcatctc 10457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 25996267 - 25996374
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    ||||||||||||||||||||| |||||| ||||||   |||||||||||| ||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  25996267 aggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctct 25996366  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  25996367 ttcatctc 25996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 4190369 - 4190259
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttc 401  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||  ||| ||||  || |||||||||||||||||||||| ||||| ||||    
T  4190369 aaaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttc 4190270  T
Q  402 tctttcatctc 412  Q
    |||||||||||    
T  4190269 tctttcatctc 4190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 305 - 411
Target Start/End: Complemental strand, 52628079 - 52627972
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||| ||||||| |||||| ||||||  |||||||||||| ||||||||||| | ||||||||||||||||||||||  |||| ||||||    
T  52628079 aaggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctc 52627980  T
Q  404 tttcatct 411  Q
    ||||||||    
T  52627979 tttcatct 52627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 51757593 - 51757699
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||| |||||| ||||| |||||| ||||||| |||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||| ||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctt 51757692  T
Q  406 tcatctc 412  Q
    |||||||    
T  51757693 tcatctc 51757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 34791829 - 34791935
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| |||||||  ||||||| ||| ||||||||| |||||||||  ||| ||||||||||| ||||| ||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctt 34791928  T
Q  406 tcatctc 412  Q
    |||||||    
T  34791929 tcatctc 34791935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 24688505 - 24688418
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||| |||||    ||||||| ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  24688505 aaaggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcaca 24688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 53581956 - 53581874
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||||  ||||||||| |||||||| || ||| |||| ||| |||||| ||| |||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcaca 53581874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 406
Target Start/End: Original strand, 42100688 - 42100788
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||  | |||||   ||||||||||| ||| |||| ||| |||||||||| ||||||||||| ||| ||||| ||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42100787  T
Q  406 t 406  Q
    |    
T  42100788 t 42100788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 42394518 - 42394435
Alignment:
Q  308 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 42394435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 51249357 - 51249407
Alignment:
Q  355 catgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||    
T  51249357 catgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 46941049 - 46941137
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccataca-ctctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||| |||||  | |||| ||| |||||||| |||||| |||| ||| |||||||||| |||||||||||    
T  46941049 aaaaggaaaatgttacatgaacaccctttattcctacatctc-attgtacaccccatgtattagggatattttggtaagttcatctcaca 46941137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 47191127 - 47191042
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||| |||||  | |||||   |||||||||||||| ||||  || |||||| ||| |||||||||||    
T  47191127 aaggaaaatgttacatgaacaccctttattcctacacctcattgtacacccatgtattagagatattttgataagttcatctcaca 47191042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 45127028 - 45126944
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||| ||||| |||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcaca 45126944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 54246252 - 54246164
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||| |||||  | ||||| | ||||||||||| ||| ||||  || ||||| |||| |||||||||||    
T  54246252 aaaaggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcaca 54246164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 54237097 - 54237180
Alignment:
Q  308 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 54237180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 40808863 - 40808949
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||| |||||  ||||  | ||||| | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  40808863 aaggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcaca 40808949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 25413680 - 25413765
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||| |||||  | ||||| | ||||||||||  ||| |||| ||| ||||| |||| |||||||||||    
T  25413680 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcaca 25413765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 36150130 - 36150214
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||| || |||||  ||||||| | ||| ||||||| ||| || | ||| |||||||||| |||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcaca 36150214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 17208073 - 17208180
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    ||||||||||||| ||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  17208073 aggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctct 17208172  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  17208173 ttcatctc 17208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 30622822 - 30622713
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||||  ||||||||||||||| ||||||||||||| |||||||| ||||| |||||    
T  30622822 aaaaggaaaatgttacatgaacatcctttaatcatacaccctattgtaagcccatgcattaaggatattttggtaaatttatctcacaaccatactttct 30622723  T
Q  403 ctttcatctc 412  Q
    ||||||||||    
T  30622722 ctttcatctc 30622713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 32473494 - 32473388
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||||| ||||||||| ||| |||||||||| ||||||||||| ||||| ||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctt 32473395  T
Q  406 tcatctc 412  Q
    |||||||    
T  32473394 tcatctc 32473388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 7617129 - 7617217
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||| |||||  ||||||||| ||| |||| |||||| |||| ||| |||||||||| |||||||||||    
T  7617129 aaaaggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcaca 7617217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 38470577 - 38470663
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||| ||||| |||||  |||||| || |||||||| |||||| |||||||| |||||||||||||||| |||||    
T  38470577 aaggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcaca 38470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 22512305 - 22512389
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||  | ||||||| ||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcaca 22512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 18033980 - 18034066
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||| |||||  | ||||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||||    
T  18033980 aaggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcaca 18034066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 390
Target Start/End: Complemental strand, 41334768 - 41334679
Alignment:
Q  302 caaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||| |||||||||||||||||||| |||||  |||||||   ||| ||||||| ||| |||| ||| |||||||||| |||||||||||    
T  41334768 caaacggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcaca 41334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 2614749 - 2614665
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 2614665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 33855143 - 33855071
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaa 378  Q
    |||||||||||||||||||| |||||  | ||||| | |||||||| |||||| |||| | ||||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 31513287 - 31513393
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 31513386  T
Q  406 tcatctc 412  Q
    |||||||    
T  31513387 tcatctc 31513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 31408732 - 31408627
Alignment:
Q  308 gaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctcttt 406  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctcttt 31408633  T
Q  407 catctc 412  Q
    ||||||    
T  31408632 catctc 31408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 40236916 - 40237025
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    ||||||||||||||||||||||| |||||| ||||||  ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||    
T  40236916 aaaggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttct 40237015  T
Q  403 ctttcatctc 412  Q
    ||||||||||    
T  40237016 ctttcatctc 40237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 27535334 - 27535225
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||  |||| ||||||||||||| ||||||||||| | ||| |||||    
T  27535334 aaaggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttct 27535235  T
Q  403 ctttcatctc 412  Q
    ||||||||||    
T  27535234 ctttcatctc 27535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 33384860 - 33384977
Alignment:
Q  297 attttcaaaaggaaaatgttacatgaacactctttaaccatacactc-tattgtacac-ccatgcattaaggacattttggtaaattcatctcacagcca 394  Q
    ||||| |||||||||||||||||||||||   ||||| ||||||| | ||||||| || |||||||||| ||||||||||||||||||||||||||  ||    
T  33384860 attttgaaaaggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaaca 33384959  T
Q  395 tattttctctttcatctc 412  Q
    || |||||||||||||||    
T  33384960 tactttctctttcatctc 33384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 5015391 - 5015479
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  5015391 aaaaggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcaca 5015479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 405
Target Start/End: Original strand, 9216301 - 9216400
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacacccatgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||||||||||| |||||  | || |  |||||||||||||||||||||  || |||||||||| ||||||||||| ||| ||||| ||||    
T  9216301 aggaaaatgttacatgaacaccctttattcctatatcctattgtacacccatgcattagagatattttggtaagttcatctcacaaccacattttatctt 9216400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 4638297 - 4638200
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||||||||  ||||  ||||||||| |||||||| |||||  |||| ||| |||||||||| ||||||||||| ||||| ||| ||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 35069720 - 35069805
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  35069720 aggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcaca 35069805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 42972852 - 42972951
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||| ||||||  |||||  | ||||||| |||||||||| |||| |||| ||| |||||||||| ||||||||||| ||| ||||| ||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42972951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 10573751 - 10573833
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||| ||||| |||||  ||||||  |||||||||| |||||| |||| | | ||||||||||||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcaca 10573833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 5194332 - 5194247
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||  ||||  |||||||   ||||||||||| |||  ||||||| |||||| |||||||||||||||    
T  5194332 aggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcaca 5194247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 24280697 - 24280612
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||| ||||||| |||||  ||||||| ||||| |||| |||||||| ||   | ||||||||||||||||||||||    
T  24280697 aggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcaca 24280612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 24001112 - 24001028
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 24001028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 42538531 - 42538447
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 42538447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 43317442 - 43317527
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||  ||||  |||||||   |||||||| || |||| ||| ||| |||||| |||||||||||||||    
T  43317442 aggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcaca 43317527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 39998408 - 39998456
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc 355  Q
    ||||||||||||||||||||  ||||| ||||||  |||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccc 39998456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 48119628 - 48119734
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 48119727  T
Q  406 tcatctc 412  Q
    |||||||    
T  48119728 tcatctc 48119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 44112675 - 44112783
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  44112675 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctc 44112774  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  44112775 tttcatctc 44112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 35003294 - 35003400
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctt 35003393  T
Q  406 tcatctc 412  Q
    |||||||    
T  35003394 tcatctc 35003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 38335918 - 38336024
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 38336017  T
Q  406 tcatctc 412  Q
    |||||||    
T  38336018 tcatctc 38336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 45639834 - 45639726
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||| || ||||||||| ||||||||||||||||||||||  |||| ||||||    
T  45639834 aaggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctc 45639735  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  45639734 tttcatctc 45639726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 38113296 - 38113189
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    |||||||||||| |||||||| |||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||||    
T  38113296 aggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactct 38113197  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  38113196 ttcatctc 38113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 45705824 - 45705931
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    |||||||||||| |||||||| |||||| |||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||    
T  45705824 aggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctct 45705923  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  45705924 ttcatctc 45705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 46168383 - 46168489
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccca-tgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| |||| |  |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T
Q  406 tcatctc 412  Q
    |||||||    
T  46168483 tcatctc 46168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 45427846 - 45427739
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    |||||||||||||||||| ||  ||||| ||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||| ||||| |||||||    
T  45427846 aggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctct 45427747  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  45427746 ttcatctc 45427739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 26585460 - 26585568
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    ||||||||||||| ||||||| ||||||| |||||||| |||||||||||| |||||||||||| ||||| ||||||||||||| ||  |||| ||||||    
T  26585460 aaggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctc 26585559  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  26585560 tttcatctc 26585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 41065152 - 41065259
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    ||||||||||||||||||||| |||||| ||||||| || |||||||||| |||||||| || ||||||||||| ||||||||||| ||||| |||||||    
T  41065152 aggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctct 41065251  T
Q  405 ttcatctc 412  Q
    ||| ||||    
T  41065252 ttcctctc 41065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 35000213 - 35000107
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||||||||||  ||||| |||||||||||||||| ||  |||| |||| |||||||||| |||||| |||||||| ||||| ||||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctt 35000114  T
Q  406 tcatctc 412  Q
    |||||||    
T  35000113 tcatctc 35000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 48499064 - 48498978
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  48499064 aaggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcaca 48498978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 14427345 - 14427404
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcatta 363  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||    
T  14427345 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 5489772 - 5489860
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  5489772 aaaaggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 5489860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 23989627 - 23989539
Alignment:
Q  304 aaaggaaaatgttacatgaacactc-tttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||| | ||||  ||||||||| |||||| |||| ||| |||| ||| ||||||||||||| ||||||||    
T  23989627 aaaggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcaca 23989539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 37814778 - 37814862
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactct-attgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||| ||||| |||||  |||||| ||| ||||||||||| ||| |||||||| |||||||||||||||| |||||    
T  37814778 ggaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcatttcaca 37814862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 43571186 - 43571102
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||  | |||||   ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcaca 43571102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 50448360 - 50448261
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||||||||||||||||    ||||||| ||||||||||  ||| |||| ||| ||||| |||| ||||||| ||| ||| ||||| ||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaaccacattttatctt 50448261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 2497660 - 2497578
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||| |||||  ||||  |||||| || ||||||||||| ||  |||||||| |||||||||| |||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcaca 2497578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 35181513 - 35181622
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||    
T  35181513 aaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttct 35181612  T
Q  403 ctttcatctc 412  Q
    ||||||||||    
T  35181613 ctttcatctc 35181622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 34304786 - 34304894
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||  |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  34304786 aaggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctc 34304885  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  34304886 tttcatctc 34304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 16603727 - 16603620
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    |||||||||||||||| |||| |||||| |||||||  |||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||||    
T  16603727 aggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactct 16603628  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  16603627 ttcatctc 16603620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 18066819 - 18066712
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||| |||||| |||| ||| ||||| |||| ||||||||||| ||||| |||||||    
T  18066819 aggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctct 18066720  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  18066719 ttcatctc 18066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 16358938 - 16358827
Alignment:
Q  303 aaaaggaaaatgttacat-gaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatatttt 400  Q
    |||| ||||||||||||| ||| || |||||| ||||||| |||||||||| ||||||||||||| | |||||| ||||||||||||||| ||||| |||    
T  16358938 aaaaagaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatacttt 16358839  T
Q  401 ctctttcatctc 412  Q
    || |||||||||    
T  16358838 ctttttcatctc 16358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 33630097 - 33629987
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttc 401  Q
    ||||| ||||||||||| |||||| |||||| |||||||   ||||||||||| |||||||| ||||||||| |||| ||||||||||| | ||| ||||    
T  33630097 aaaagaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttc 33629998  T
Q  402 tctttcatctc 412  Q
    |||||||||||    
T  33629997 tctttcatctc 33629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 10678198 - 10678146
Alignment:
Q  360 attaaggacattttggtaaattcatctcacagccatattttctctttcatctc 412  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10678198 attaaggacattttggtaaattcatctcacaaccatactttctctttcatctc 10678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 2546995 - 2547080
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||||||    ||||||| |||||||||| |||| |||| ||| ||||| |||| |||||||||||    
T  2546995 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcaca 2547080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 19386674 - 19386559
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgta------cacccatgcattaaggacattttggtaaattcatctcacagccata 396  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||| ||      |   ||||||||||| |  ||||| ||||||||||||||| | |||    
T  19386674 aaaaggaaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactata 19386575  T
Q  397 ttttctctttcatctc 412  Q
     |||||||||||||||    
T  19386574 ctttctctttcatctc 19386559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 36743587 - 36743499
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  36743587 aaaaggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 36743499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 26125637 - 26125719
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||| ||||| |||||  |||||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 26125719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 11582766 - 11582850
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 11582850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 42295191 - 42295279
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||| |||||||||||||||||| |||||  | |||||   ||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  42295191 aaaagaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcaca 42295279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 10096135 - 10096168
Alignment:
Q  104 aattgcagggtaattttgtaagtttcatttaatt 137  Q
    ||||| ||||||||||||||||||||||||||||    
T  10096135 aattgaagggtaattttgtaagtttcatttaatt 10096168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 31384663 - 31384748
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||| | |||||||||||| |||||  | |||| ||||||||||| |||||| |||| | | |||||||||| |||||||||||    
T  31384663 aggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcaca 31384748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 1375542 - 1375626
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||| ||||||||||||  ||||  ||||||| | |||||||| |||||  |||| ||| ||||||||||||| ||||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcaca 1375626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 29705362 - 29705446
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||    ||||| | |||||||| |||||| |||| ||| |||||| ||| |||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcaca 29705446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 43114554 - 43114663
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||    
T  43114554 aaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttct 43114653  T
Q  403 ctttcatctc 412  Q
    ||||||||||    
T  43114654 ctttcatctc 43114663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 18491704 - 18491811
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| || ||||    
T  18491704 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactct 18491803  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  18491804 ttcatctc 18491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 966936 - 966828
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||  |||| ||||||    
T  966936 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctc 966837  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  966836 tttcatctc 966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 16803966 - 16804074
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||    
T  16803966 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctc 16804065  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  16804066 tttcatctc 16804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 16843248 - 16843356
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||    
T  16843248 aaggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctc 16843347  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  16843348 tttcatctc 16843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 11825752 - 11825648
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 407  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||  |||| ||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctttc 11825653  T
Q  408 atctc 412  Q
    |||||    
T  11825652 atctc 11825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 41282072 - 41281968
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 407  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 41281973  T
Q  408 atctc 412  Q
    |||||    
T  41281972 atctc 41281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 12415560 - 12415454
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12415461  T
Q  406 tcatctc 412  Q
    |||||||    
T  12415460 tcatctc 12415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 12427620 - 12427514
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12427521  T
Q  406 tcatctc 412  Q
    |||||||    
T  12427520 tcatctc 12427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 4299518 - 4299414
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcacagccatattttctctttc 407  Q
    ||||||||| |||||||| |||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||  |||| || ||||||     
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactcttta 4299419  T
Q  408 atctc 412  Q
    |||||    
T  4299418 atctc 4299414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 6518566 - 6518485
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  6518566 aaaatgttacatgaacac-ctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcaca 6518485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 34895844 - 34895735
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttct 402  Q
    |||||||| ||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||||  |||| ||| |    
T  34895844 aaaggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttat 34895745  T
Q  403 ctttcatctc 412  Q
    ||||||||||    
T  34895744 ctttcatctc 34895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 14285675 - 14285782
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    |||||||| |||||  ||||| |||||| ||||||| ||||||||||||| ||  ||||| || |||||||||||||||||||| || |||| |||||||    
T  14285675 aggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttctct 14285774  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  14285775 ttcatctc 14285782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 4452013 - 4451944
Alignment:
Q  344 tattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 412  Q
    |||||||||||  |||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  4452013 tattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctc 4451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 34817875 - 34817777
Alignment:
Q  308 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    ||||||||||||||||||| |||||  || ||||   ||||||||||| ||||| || | |||||||||||||||||||||||| ||| | ||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 412
Target Start/End: Complemental strand, 12531741 - 12531657
Alignment:
Q  328 ctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcacagccatattttctctttcatctc 412  Q
    |||||| ||||||| | |||||||||| || |||||| || | ||||||||||||||||||||| ||||| |||||||||||||||    
T  12531741 ctttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttcatctc 12531657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 19047158 - 19047241
Alignment:
Q  308 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 19047241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 1750414 - 1750498
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||||| |||||  | ||||| | ||||||||||| ||| |||| ||| ||||| |||| |||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcaca 1750498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 4764830 - 4764742
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||| |||||  ||||  | ||||| |||||||||| |||||| ||||   | ||||||||||||||||||||||    
T  4764830 aaaaggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcaca 4764742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 12302356 - 12302269
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||| |||||    ||||| | ||||||||||| ||| |||| ||| ||||| |||| |||||||||||    
T  12302356 aaaggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcaca 12302269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 8896681 - 8896599
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    |||||||||||||||||| |||||  || ||| || ||||||||||| || || || | | ||||||||||||||||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcaca 8896599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 13294278 - 13294249
Alignment:
Q  112 ggtaattttgtaagtttcatttaattaact 141  Q
    ||||||||||||||||||||||||||||||    
T  13294278 ggtaattttgtaagtttcatttaattaact 13294249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 42026766 - 42026853
Alignment:
Q  306 aggaaaatgttacatgaacactc--tttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||| |  ||||  |||||| || |||||||| |||  |||||| ||| ||||||| ||||||||||||||    
T  42026766 aggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcaca 42026853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 45817 - 45713
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 407  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 45718  T
Q  408 atctc 412  Q
    |||||    
T  45717 atctc 45713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 412
Target Start/End: Original strand, 27441544 - 27441648
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctttc 407  Q
    |||||||||||||||||| |||||| ||||||| |||||||||| || ||| |||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 27441643  T
Q  408 atctc 412  Q
    |||||    
T  27441644 atctc 27441648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 33242401 - 33242509
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctc 403  Q
    ||||||||||||||||||||||  ||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||||||||||  |||| ||||||    
T  33242401 aaggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctc 33242500  T
Q  404 tttcatctc 412  Q
    |||||||||    
T  33242501 tttcatctc 33242509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 33253913 - 33253997
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||  ||||| || |||| ||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcaca 33253997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 26670121 - 26670025
Alignment:
Q  295 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||| |||||||||||||||||||||||| |||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  26670121 taattttaaaaaggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcaca 26670025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 3213397 - 3213499
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactct-attgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttc 401  Q
    ||||||||||||||||| ||||| |||||  |||||| ||| ||||||||||| ||| |||||||| |||||||||||||||| ||||| ||||| |||     
T  3213397 aaaggaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatacttta 3213495  T
Q  402 tctt 405  Q
    ||||    
T  3213496 tctt 3213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 31109323 - 31109216
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcacagccatattttctct 404  Q
    ||||||||||||||||||||| |||||| ||||||  | ||| |||| |||||||| || ||| |||||| |||||||| || ||  ||| |||||||||    
T  31109323 aggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctct 31109224  T
Q  405 ttcatctc 412  Q
    ||||||||    
T  31109223 ttcatctc 31109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 7273438 - 7273351
Alignment:
Q  304 aaaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||||| |||||  | |||||  ||||||||| |||||| ||||  || |||||||||| |||||||||||    
T  7273438 aaaggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcaca 7273351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 24204085 - 24204003
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||  ||||  | ||||| ||||||||||| ||||| |||| ||| |||||||||| |||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcaca 24204003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 9698434 - 9698349
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||| |||||  | ||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  9698434 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcaca 9698349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 21279928 - 21280013
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||| |||||    |||| || |||| ||| |||||| |||| ||| ||||||||||||||||||||||    
T  21279928 aggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcaca 21280013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 21293778 - 21293693
Alignment:
Q  306 aggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||| ||||| |||||  |||||| |  | ||||||||| ||| |||||||| |||||||||||||||| |||||    
T  21293778 aggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcaca 21293693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 26466794 - 26466883
Alignment:
Q  302 caaaaggaaaatgttacatgaacactctttaaccatacactctattgtacac-ccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||| ||||| |||||  | ||||| | ||||||||| ||||| |||| ||  |||||||||| |||||||||||    
T  26466794 caaaaggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcaca 26466883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 13743321 - 13743237
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||  ||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcaca 13743237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 13748821 - 13748737
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||||  ||||  ||||||  | ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcaca 13748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 30735984 - 30736066
Alignment:
Q  309 aaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||| ||||  | ||||| | |||||||||| |||| ||||  || |||||||||| |||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcaca 30736066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 11529681 - 11529644
Alignment:
Q  104 aattgcagggtaattttgtaagtttcatttaattaact 141  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  11529681 aattgaagggtaattttgtaaatttcatttaattaact 11529644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 7292743 - 7292831
Alignment:
Q  303 aaaaggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||| ||||||  ||||  |||||||   ||| ||||||| ||| |||| ||| |||||||||| |||||||||||    
T  7292743 aaaaggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcaca 7292831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 35556 - 35450
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcacagccatattttctctt 405  Q
    |||||||||||||| |||||  ||||| |||||||  |||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| ||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctt 35457  T
Q  406 tcatctc 412  Q
    |||||||    
T  35456 tcatctc 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 673 - 769
Alignment:
Q  295 taattttcaaaaggaaaatgttacatgaacactctttaaccatacactctattgtacacc-catgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||| |||||||||||||||||||||||| |||||  | |||||   |||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  673 taattttaaaaaggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcaca 769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 112656 - 112739
Alignment:
Q  308 gaaaatgttacatgaacactctttaaccatacactctattgtacaccc-atgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||||||||||| |||||  | |||| || ||||||||||| ||| |||| ||| |||||||||| |||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcaca 112739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 11249 - 11335
Alignment:
Q  305 aaggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatctcaca 390  Q
    ||||||||||| |||||||||| |||||  ||||||| | |||||||| |||||  |||| ||| |||||||||| |||||||||||    
T  11249 aaggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcaca 11335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 386
Target Start/End: Complemental strand, 23521 - 23441
Alignment:
Q  307 ggaaaatgttacatgaacactctttaaccatacactctattgtaca-cccatgcattaaggacattttggtaaattcatct 386  Q
    ||||||||||| |||||||| |||||  | ||||||| |||||||| |||||| ||||  || |||||||||| |||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University