View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_low_23 (Length: 414)
Name: NF4285_low_23
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 28280892 - 28281294
Alignment:
| Q |
1 |
gctcctccaccctctctgctgctgaaaaatcgaagggaaaccgcaaaatctgcctcaaaaggcttcctaaacacaatgacagtatgtatgatattgatat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28280892 |
gctcctccaccctctctgctgcaaaaaaatcgaagagaaaccgcaaaatctgcctcaaaaggcttcctaaacacaatgacagtatgtatgatattgatac |
28280991 |
T |
|
| Q |
101 |
ttacttagctataatataaccggttctcttgtttctaatcatattttctttatcagaatctatggttacgggtcgcattaaactacctgatatgcttgtg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28280992 |
ttacttagctataatataacaggttctcttgtttctaatcatattttctttatcagaatctatggttacgggtcgcattaaactacctgatatgcttgtg |
28281091 |
T |
|
| Q |
201 |
gaacaatcttggttggaagctttacctgatgaatttcagaaatcttatgccctggctctttgcatgttcgttggaaatgagtattttgctttcaaagatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28281092 |
gaacaatcttggttggaagctttacctgatgaatttcagaaatcgtacgccctggctctttgcatgttcgttggaaatgagtattttgctttcaaagatt |
28281191 |
T |
|
| Q |
301 |
ctgtatatcctcctccgcatttgattttcgatgcttttaacactactccttttcattctgttaaggctttgatccttggccaggtttgtggatttctgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28281192 |
ctgtatatcctcctccgcatttgattttcgatgcttttaacactactccttttcattctgttaaggctgtgatccttggccaggtttgtggatttctgtt |
28281291 |
T |
|
| Q |
401 |
tga |
403 |
Q |
| |
|
||| |
|
|
| T |
28281292 |
tga |
28281294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 37 - 396
Target Start/End: Original strand, 28289038 - 28289398
Alignment:
| Q |
37 |
gaaaccgcaaaatctgcctcaaaaggcttcctaaacacaatgacagtatgtatgatattgata-tttacttagctataatataaccggttctcttgtttc |
135 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| | ||||| |
|
|
| T |
28289038 |
gaaaccgcagaatctgcctcgaaaggcttcctaaacacaatgacagtatgtatgatattgatactttacttagctataatataatagcttctttcgtttc |
28289137 |
T |
|
| Q |
136 |
taatcatattttctttatcagaatctatggttacgggtcgcattaaactacctgatatgcttgtggaacaatcttggttggaagctttacctgatgaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||| |||||| |
|
|
| T |
28289138 |
taatcatattttctttatcagaatctatggctacaggtcgcattaaactaccggatatgcttgtagagcaatcttggttggaagcattacctggtgaatt |
28289237 |
T |
|
| Q |
236 |
tcagaaatcttatgccctggctctttgcatgttcgttggaaatgagtattttgctttcaaagattctgtatatcctcctccgcatttgattttcgatgct |
335 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
28289238 |
tcagaaaccttacgccccggctctttgcatgttcgtccaaaatgagattttcgctttcaaagattccgtatatcctccttcgcatttgattttcaatgct |
28289337 |
T |
|
| Q |
336 |
tttaacactactccttttcattctgttaaggctttgatccttggccaggtttgtggatttc |
396 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
28289338 |
cttaatactactccttttcattccgttaaggctgtgattcttggccaggtttgtggatttc |
28289398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 28278246 - 28278375
Alignment:
| Q |
110 |
tataatataaccggttctcttgtttctaatcatattttctttatcagaatctatggttacgggtcgcattaaactacctgatatgcttgtggaacaatct |
209 |
Q |
| |
|
||||||||||| |||||| | ||||||||| |||||| |||||||| ||||| | | ||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
28278246 |
tataatataacaggttctttcgtttctaatgatattt-ctttatcataatctttagctacgggtcgcattaaactaatggatatgcttgtggagcaatct |
28278344 |
T |
|
| Q |
210 |
tggttggaagctttacctgatgaatttcaga |
240 |
Q |
| |
|
|||||||||| |||||||| |||||| |||| |
|
|
| T |
28278345 |
tggttggaaggtttacctggtgaattccaga |
28278375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 396
Target Start/End: Original strand, 28300076 - 28300175
Alignment:
| Q |
297 |
gattctgtatatcctcctccgcatttgattttcgatgcttttaacactactccttttcattctgttaaggctttgatccttggccaggtttgtggatttc |
396 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| ||||| |||| ||||| |||||||| |||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
28300076 |
gattatgtatatcctcctgcgcatttgattttcaatgctcttaatactaccccttttcaatctgctaaggttgtgatccttggccaggtttgtggatttc |
28300175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 28278406 - 28278500
Alignment:
| Q |
301 |
ctgtatatcctcctccgcatttgattttcgatgcttttaacactactccttttcattctgttaaggctttgatccttggccaggtttgtggattt |
395 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||| |||| ||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
28278406 |
ctgtaaatcctcctcagcatttgattttcaatgctcttaatactactccttttcatcctgttaaggttgtgattcttggccaggtttgtggattt |
28278500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 28299987 - 28300024
Alignment:
| Q |
205 |
aatcttggttggaagctttacctgatgaatttcagaaa |
242 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
28299987 |
aatcgtggttggaagctttacctggtgaatttcagaaa |
28300024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 82 - 403
Target Start/End: Original strand, 24729174 - 24729494
Alignment:
| Q |
82 |
gtatgtatgatattgatatttacttagctataatataaccggttctcttgtttctaatcatattttctttatcagaatctatggttacgggtcgcattaa |
181 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||| | ||| ||||||| |||||||||||||| ||| | ||| ||||||||||| |
|
|
| T |
24729174 |
gtatgtatgatattgata----cttagctataatataacatgttctttcatttttaatcattttttctttatcagattctttaactaccggtcgcattaa |
24729269 |
T |
|
| Q |
182 |
actacctgatatgcttgtggaacaatcttggttggaagctttacctgatga---atttcagaaatctta-tgccctggctctttgcatgttcgttggaaa |
277 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||||| ||||||||||||| || |||| |
|
|
| T |
24729270 |
actacctgatatgcttgtggaataatcttggttggaagctttgcctgatgatgaatttcagaaatcttacttccctg-ctctttgcatgtttgtcagaaa |
24729368 |
T |
|
| Q |
278 |
tgagtattttgctttcaaagattctgtatatcctcctccgcatttgattttcgatgcttttaacactactccttttcattctgttaaggctttgatcctt |
377 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||| |
|
|
| T |
24729369 |
tgagtttttttctttcaaagattctgtatatcctcctccacatttgattttcgatgcttttaacacttctccttttcattctgtctaggttgtgatcctt |
24729468 |
T |
|
| Q |
378 |
ggccaggtttgtggatttctgtttga |
403 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
24729469 |
tgccaggtttgtggaagtctgtttga |
24729494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 213 - 403
Target Start/End: Complemental strand, 28747100 - 28746910
Alignment:
| Q |
213 |
ttggaagctttacctgatgaatttcagaaatcttatgccctggctctttgcatgttcgttggaaatgagtattttgctttcaaagattctgtatatcctc |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28747100 |
ttggaagctttacctggtgaatttcagaaaccttacgcccctgctctttgcatgttcatcggaaatgagtattttgctctcaaagattctgtatatcctc |
28747001 |
T |
|
| Q |
313 |
ctccgcatttgattttcgatgcttttaacactactccttttcattctgttaaggctttgatccttggccaggtttgtggatttctgtttga |
403 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28747000 |
ctccgtatttgattttcgatgcttttaacaccactgcttttcattctgttaaggctgtgatccttggccaggtttgtggatttctgtttga |
28746910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University