View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_25 (Length: 403)
Name: NF4285_low_25
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 160686 - 160314
Alignment:
| Q |
16 |
tcatgatttggttttttgtcgtcgttcgggacgacagtgtcataaagatgcttcaatacnnnnnnnggtatctgattttccaacaaaatcaagtcccttg |
115 |
Q |
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| T |
160686 |
tcatgatttggttttttgtcgtcgttcgggacgacagtgtcataaagatgcttcaatacaaaaaaaggtatctgattttccaacaaaatcaagtcccttg |
160587 |
T |
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| Q |
116 |
tgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgttttgatgt |
215 |
Q |
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| T |
160586 |
tgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgttttgatgt |
160487 |
T |
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| Q |
216 |
atccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgtcgggaaat |
315 |
Q |
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| T |
160486 |
atccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgttgggaaat |
160387 |
T |
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| Q |
316 |
ttctctgcataacattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggatt |
388 |
Q |
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| T |
160386 |
ttctctgcataacattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggatt |
160314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 27 - 388
Target Start/End: Complemental strand, 152240 - 151879
Alignment:
| Q |
27 |
ttttttgtcgtcgttcgggacgacagtgtcataaagatgcttcaatacnnnnnnnggtatctgattttccaacaaaatcaagtcccttgtgatgcttttg |
126 |
Q |
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| T |
152240 |
ttttttgtcgccgttagggacgacagtttggtaaagatccatcaatacaaaaaatggtatctgattttccaacaaaatcaagtcccttgtgatgcttttg |
152141 |
T |
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| Q |
127 |
ctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgttttgatgtatccgacttcc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
152140 |
ctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgttttgatgtatccgacttcc |
152041 |
T |
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| Q |
227 |
atgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgtcgggaaatttctctgcata |
326 |
Q |
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| T |
152040 |
atgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgttgggaaatttctctgcata |
151941 |
T |
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| Q |
327 |
acattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggatt |
388 |
Q |
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| T |
151940 |
acattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggatt |
151879 |
T |
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