View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_26 (Length: 398)
Name: NF4285_low_26
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 379
Target Start/End: Complemental strand, 2814543 - 2814159
Alignment:
| Q |
10 |
gtgagatgaaaccaacaaaaattaaagaagatgaaagaaaatagacataaacaaatctagattttcttagatctagcatatcacgaaaatgattttctta |
109 |
Q |
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| T |
2814543 |
gtgagaagaaaccaacaaaaattaaagaagatgaaagaaaatagacataaacaaatctagattttcttagatctagcatatcacggaaatgattttctta |
2814444 |
T |
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| Q |
110 |
gattaaacgaattccatcaatctaattttgccctt---------------gtgttctgtgtttttagcactgctgagtgctcaaccacgtgacactgaca |
194 |
Q |
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| T |
2814443 |
gattaaacgacttccatcaatctaattttgcccttttgtgttctgtgtttgtgttctgtgtttttagcagtgttgagtgctcaaccacgtgacactgaca |
2814344 |
T |
|
| Q |
195 |
gatacttattacagctgtgtgctctatatgtatatgtatagttcggtcggtgcagcataccgttgggtttggattttcacttgtgccgattgacccgcgt |
294 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
2814343 |
gatacttattacagctgtgtgctccatatgtatatgtatagttcggtcggtgcagcataccgttgggtctggattttcacttgtgccgattgacccgcat |
2814244 |
T |
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| Q |
295 |
caactgttcgacctgacccgacacccttcggtccatacggtttggccggtttgggccggatattttatttttgtccagtcctagt |
379 |
Q |
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| T |
2814243 |
caaccgttcgacccgacccaacacccttcggtccatacagtttggccggtttgggccggatattttatttttgtccagtcctagt |
2814159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 47517880 - 47517953
Alignment:
| Q |
280 |
ccgattgacccgcgtcaactgttcgacctgacccgacacccttcggtccatacggtttggccggtttgggccgg |
353 |
Q |
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| T |
47517880 |
ccgattgacccgcttaaactgttggacccgacccgacacgcttcaggtcatccggttcggccggtttgggccgg |
47517953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 40848867 - 40848968
Alignment:
| Q |
269 |
tttcacttgtgccgattgacccgcgtcaactgttcgacctgacccgacacccttcggtccatacggtttggccggtttgggccggatattttatttttgt |
368 |
Q |
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||||| |||| ||| || || ||| ||||| |||||||||||||| | | ||||||| |||||| || |||| |||||||||| ||||| ||||||||| |
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| T |
40848867 |
tttcatttgtaccgcttaactcgcatcaaccgttcgacctgacccaaaatccttcggctcatacgattcggccagtttgggccgaatattatatttttgt |
40848966 |
T |
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| Q |
369 |
cc |
370 |
Q |
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|| |
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| T |
40848967 |
cc |
40848968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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