View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_low_27 (Length: 396)

Name: NF4285_low_27
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_low_27
NF4285_low_27
[»] chr4 (17 HSPs)
chr4 (1-396)||(2813788-2814182)
chr4 (118-277)||(4377154-4377313)
chr4 (23-269)||(2158552-2158801)
chr4 (118-274)||(36247748-36247905)
chr4 (118-279)||(33517945-33518107)
chr4 (76-254)||(1111940-1112118)
chr4 (23-153)||(36247913-36248043)
chr4 (201-277)||(51070314-51070390)
chr4 (163-220)||(50723220-50723277)
chr4 (209-273)||(1758191-1758255)
chr4 (53-153)||(25023196-25023295)
chr4 (84-153)||(33518115-33518184)
chr4 (23-142)||(4377331-4377452)
chr4 (222-277)||(2185129-2185184)
chr4 (105-245)||(52849750-52849884)
chr4 (237-274)||(13834129-13834166)
chr4 (237-277)||(45616058-45616098)
[»] chr3 (23 HSPs)
chr3 (23-277)||(26285756-26286012)
chr3 (23-278)||(7856413-7856670)
chr3 (23-270)||(24309801-24310047)
chr3 (26-277)||(36475385-36475635)
chr3 (45-277)||(23778173-23778410)
chr3 (163-274)||(25032175-25032286)
chr3 (119-225)||(36478213-36478319)
chr3 (105-191)||(52308867-52308953)
chr3 (135-271)||(30136508-30136644)
chr3 (135-271)||(30142637-30142773)
chr3 (135-271)||(30146059-30146195)
chr3 (63-184)||(38572987-38573108)
chr3 (117-213)||(395922-396019)
chr3 (23-151)||(36477977-36478106)
chr3 (124-243)||(6714403-6714522)
chr3 (192-259)||(35504208-35504275)
chr3 (201-275)||(19832038-19832112)
chr3 (45-171)||(25070674-25070800)
chr3 (45-171)||(26903174-26903300)
chr3 (45-171)||(36617740-36617866)
chr3 (212-268)||(8034690-8034746)
chr3 (127-168)||(23794964-23795005)
chr3 (103-159)||(35502481-35502537)
[»] chr8 (23 HSPs)
chr8 (23-277)||(44873203-44873456)
chr8 (23-273)||(29866084-29866336)
chr8 (23-273)||(10381343-10381592)
chr8 (79-277)||(7681353-7681551)
chr8 (45-271)||(32161349-32161573)
chr8 (63-259)||(24556878-24557074)
chr8 (168-269)||(6978410-6978511)
chr8 (105-191)||(11993687-11993773)
chr8 (76-225)||(29841154-29841304)
chr8 (121-191)||(34696984-34697054)
chr8 (63-243)||(7388102-7388283)
chr8 (103-241)||(2148338-2148477)
chr8 (45-159)||(6802716-6802830)
chr8 (117-220)||(43421486-43421590)
chr8 (45-171)||(45486158-45486284)
chr8 (142-191)||(35990865-35990914)
chr8 (204-259)||(6802833-6802888)
chr8 (201-279)||(7392126-7392203)
chr8 (222-276)||(34697094-34697148)
chr8 (55-152)||(33235596-33235693)
chr8 (119-171)||(11463191-11463243)
chr8 (211-271)||(11995259-11995319)
chr8 (174-242)||(37042536-37042604)
[»] chr1 (19 HSPs)
chr1 (23-220)||(9539548-9539744)
chr1 (45-277)||(27464214-27464446)
chr1 (23-269)||(8064906-8065151)
chr1 (118-220)||(10781246-10781348)
chr1 (24-154)||(10781104-10781235)
chr1 (175-256)||(23347795-23347876)
chr1 (208-277)||(9539762-9539831)
chr1 (201-278)||(43909377-43909454)
chr1 (201-279)||(9516767-9516845)
chr1 (184-254)||(34912296-34912366)
chr1 (201-278)||(35438901-35438978)
chr1 (201-273)||(281148-281219)
chr1 (80-155)||(23353428-23353503)
chr1 (208-279)||(39299269-39299340)
chr1 (231-277)||(44352815-44352861)
chr1 (23-88)||(25031052-25031116)
chr1 (208-244)||(10781365-10781401)
chr1 (201-277)||(13241944-13242020)
chr1 (216-276)||(41006119-41006179)
[»] chr5 (16 HSPs)
chr5 (23-276)||(36744855-36745110)
chr5 (26-268)||(43144488-43144731)
chr5 (23-251)||(34751012-34751239)
chr5 (46-273)||(25818997-25819228)
chr5 (126-277)||(26459610-26459761)
chr5 (45-275)||(5069761-5069995)
chr5 (103-252)||(5568955-5569105)
chr5 (116-245)||(33824760-33824890)
chr5 (76-191)||(7607248-7607363)
chr5 (163-277)||(36633908-36634024)
chr5 (76-242)||(980137-980302)
chr5 (187-277)||(22536876-22536966)
chr5 (182-245)||(35676348-35676410)
chr5 (211-277)||(7607392-7607458)
chr5 (79-149)||(29670020-29670090)
chr5 (134-225)||(39509128-39509220)
[»] chr2 (13 HSPs)
chr2 (23-276)||(32032893-32033145)
chr2 (76-276)||(7700258-7700457)
chr2 (64-270)||(34878614-34878821)
chr2 (64-264)||(18703633-18703822)
chr2 (76-191)||(34190030-34190145)
chr2 (163-276)||(11562084-11562194)
chr2 (122-264)||(27447736-27447879)
chr2 (114-256)||(38417728-38417871)
chr2 (63-161)||(3357064-3357161)
chr2 (185-264)||(16639293-16639372)
chr2 (212-277)||(18458698-18458763)
chr2 (214-277)||(6141381-6141444)
chr2 (103-156)||(16639187-16639240)
[»] chr7 (27 HSPs)
chr7 (23-275)||(33941572-33941814)
chr7 (23-245)||(30074563-30074786)
chr7 (134-242)||(34346852-34346960)
chr7 (117-277)||(26824465-26824628)
chr7 (23-211)||(2945330-2945519)
chr7 (103-274)||(46090209-46090380)
chr7 (26-187)||(24658431-24658590)
chr7 (116-277)||(32221862-32222026)
chr7 (45-191)||(38300330-38300480)
chr7 (63-225)||(25232916-25233079)
chr7 (76-274)||(27080339-27080534)
chr7 (76-274)||(27197767-27197962)
chr7 (103-208)||(39785484-39785590)
chr7 (201-277)||(7899402-7899478)
chr7 (201-274)||(26050085-26050158)
chr7 (201-270)||(26059448-26059517)
chr7 (23-171)||(1691671-1691818)
chr7 (122-183)||(40716946-40717008)
chr7 (212-277)||(10702659-10702724)
chr7 (203-277)||(2945846-2945917)
chr7 (184-244)||(49143956-49144016)
chr7 (45-152)||(43265897-43266004)
chr7 (212-274)||(10703218-10703280)
chr7 (55-152)||(10512018-10512115)
chr7 (212-271)||(1691539-1691598)
chr7 (76-171)||(39780992-39781087)
chr7 (117-149)||(6051154-6051186)
[»] chr6 (15 HSPs)
chr6 (104-264)||(16461644-16461804)
chr6 (23-275)||(14607698-14607926)
chr6 (84-243)||(6689160-6689316)
chr6 (163-268)||(2919959-2920062)
chr6 (103-271)||(1975266-1975435)
chr6 (45-240)||(30705248-30705438)
chr6 (53-191)||(21883261-21883399)
chr6 (123-245)||(30702648-30702768)
chr6 (105-191)||(33704118-33704205)
chr6 (45-171)||(18816936-18817062)
chr6 (211-276)||(33704022-33704087)
chr6 (142-186)||(35188058-35188102)
chr6 (45-152)||(24901724-24901831)
chr6 (128-191)||(8150815-8150879)
chr6 (214-274)||(17848977-17849037)
[»] scaffold0002 (1 HSPs)
scaffold0002 (64-272)||(461302-461511)
[»] scaffold0311 (1 HSPs)
scaffold0311 (63-277)||(817-1027)
[»] scaffold0535 (1 HSPs)
scaffold0535 (66-242)||(9625-9800)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 2814182 - 2813788
Alignment:
Q  1 attttatttttgtccagtcctagtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatga 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  2814182 attttatttttgtccagtcctagtgaagagtaacctatgtaataaac-tggatgatcagtaactaaatgaccgtattgtaacttgtatagaaatatatga 2814084  T
Q  101 tgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttca 200  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2814083 tgttttaacaataagcaatgatgttattttagctcattttcaacaaatggatatgagacgactttcattgtaatgtattgtatcaaacaattttatttca 2813984  T
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgatttttagattatataatttgaa 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  2813983 tatttttaatatagtttgcattattgtttctttgaaattttagctccatatataccaaaagtctgaatccgcccatgatttttagattatataatttgaa 2813884  T
Q  301 atattataatgcatgcgagaaactttgagggtgaaaaaagaaacactctttaaactaataannnnnnngggctgagcggcaaactggcaatggtca 396  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  2813883 gtattataatgcatgcgagaaactttgagggtgaaaaaagaaacactctttaaactaataatttttttgggctgagcggcaaactggcaatggtca 2813788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 118 - 277
Target Start/End: Complemental strand, 4377313 - 4377154
Alignment:
Q  118 atgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagttt 217  Q
    ||||||| |||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  4377313 atgatgtcattttaactcattttcaacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagttt 4377214  T
Q  218 gcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||| |||||||||||||||||| |||| |||||| |||| |||||||||||| |||||||    
T  4377213 gcattattgtttctttgaaattatagctccacatgtacctaaagtctggatctgcccctg 4377154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 2158801 - 2158552
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||| ||| |||| ||||||||   |  |||||||||||| ||||||| |||||||||| | ||  | |||||||||| | |||||||    
T  2158801 gtgaagagtaacctatgtaacaaaa-tgggtgattgatggctaaatgaccgtcttgtaacctatatagaaagagatcttcttttaacaattagcaatgat 2158703  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
     |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  2158702 attattttagctcattttcaacaaatggataggagacgattttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgcatt 2158603  T
Q  223 at----tgtttctttgaaattttagccccacatataccaaaagtctggatc 269  Q
    ||    | ||  |||||||||||||||  ||||||||||||||||| ||||    
T  2158602 attttattttattttgaaattttagccatacatataccaaaagtctagatc 2158552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 36247905 - 36247748
Alignment:
Q  118 atgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcata-tttttaatatagtt 216  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | | ||| || ||||||||||||||    
T  36247905 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcaaacaatatgaattcttattttttaatatagtt 36247806  T
Q  217 tgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 274  Q
    |||| |||||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  36247805 tgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 36247748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 33518107 - 33517945
Alignment:
Q  118 atgatgttattttacctcatttt-caacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtt 216  Q
    ||||||| |||||| |||||||| | |||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||    
T  33518107 atgatgtcattttagctcatttttcgacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatataatt 33518008  T
Q  217 tgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 279  Q
    || | |||||||||||| |||||||| | || |||||||| || |||| ||||||||||||||    
T  33518007 tgtattattgtttctttaaaattttaactccgcatatacctaatgtctagatccgcccctgat 33517945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 1112118 - 1111940
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-t 174  Q
    |||||||||||||||||||| ||| | |||||||||| ||||| || |||||||||  |||||||||||||||||||| ||||| | ||| ||||| | |    
T  1112118 ttgtaacttatatagaaatacatgttcttttaacaattaacaacgaggttattttagatcattttcaacaaatggataagagacaattttgattgtaatt 1112019  T
Q  175 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatata 254  Q
    |||| | |||||||||| ||||||| |||| |||||| |||||||| |||| |||| |||||||||||||| || |||||    
T  1112018 gtatcgcatcaaacaatgttatttcttattattaata-agtttgcattattatttcattgaaattttagccacatatata 1111940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 36248043 - 36247913
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaactta--tatagaaatatatgatgttttaacaataaacaatg 120  Q
    |||||||||||||||| ||| |||| ||| ||||||||  |||||||||||| ||||||||||  |||||||| ||||| | |||||||||| |||||||    
T  36248043 gtgaagagtaacctatttaacaaaa-tggatgatcagtggctaaatgaccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatg 36247945  T
Q  121 atgttattttacctcattttcaacaaatggata 153  Q
    |||| |||||| |||| ||||||||||||||||    
T  36247944 atgtcattttagctca-tttcaacaaatggata 36247913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 51070390 - 51070314
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||||||||||||||||||| ||  |||||||| |||||||||||| ||| || ||||||||||||||    
T  51070390 tatttttaatatagtttgcaatattgttttttcaaaattttaaccccacatatactaaatgtttggatccgcccctg 51070314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 50723220 - 50723277
Alignment:
Q  163 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 220  Q
    ||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  50723220 tttcattgtaatgtattatatcaaacaatgttatttcttatttttaatatagtttgca 50723277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 1758255 - 1758191
Alignment:
Q  209 atatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 273  Q
    ||||||||| || |||||||||||||||||||||||||||||| |||||||  ||| ||||||||    
T  1758255 atatagtttacattattgtttctttgaaattttagccccacatgtaccaaatatctagatccgcc 1758191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 25023196 - 25023295
Alignment:
Q  53 tgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 152  Q
    ||||||||  |||||| ||||| |||||||||||||||||||| ||| | |||||||||| | ||||||| |||||||| | |||||| ||||||| |||    
T  25023196 tgatcagtggctaaataaccgtcttgtaacttatatagaaatagatgttcttttaacaattagcaatgat-ttattttagcgcattttaaacaaatagat 25023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 33518184 - 33518115
Alignment:
Q  84 tatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggata 153  Q
    |||||||||||| ||| | |||||||||| | ||||||||| |||||| ||||||||||||| |||||||    
T  33518184 tatatagaaatagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacagatggata 33518115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 4377452 - 4377331
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata---gaaatatatgatgttttaacaataaacaat 119  Q
    |||||||||||||||| ||| |||| ||||||||||||  |||||||| ||| ||||||||||||||    ||| | ||| | ||| |||||| | ||||    
T  4377452 gtgaagagtaacctatgtaacaaaa-tgggtgatcagtggctaaatgatcgtcttgtaacttatatatagaaaaaagatgttctttaaacaattagcaat 4377354  T
Q  120 gatgttattttacctcattttca 142  Q
    ||||| |||||| ||||||||||    
T  4377353 gatgtcattttagctcattttca 4377331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 2185184 - 2185129
Alignment:
Q  222 tattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    |||| ||| |||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  2185184 tattatttatttgaaattttagctccacatatacctaaagtttggatccgcccctg 2185129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 52849750 - 52849884
Alignment:
Q  105 ttaacaataaacaatgatgttatttta--cctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcata 202  Q
    |||||||| | ||||||| ||||||||  ||  ||| ||||||||| |||| || || | ||||||||| || |||||||| |||||||||        |    
T  52849750 ttaacaattatcaatgatattattttagtccatattatcaacaaattgataggaaaccattttcattgtaatatattgtattaaacaattt--------a 52849841  T
Q  203 tttttaatatagtttgcaatattgtttctttgaaattttagcc 245  Q
    |||||||||||||||| | |||||||||||| |||||||||||    
T  52849842 tttttaatatagtttgtattattgtttctttaaaattttagcc 52849884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 13834166 - 13834129
Alignment:
Q  237 attttagccccacatataccaaaagtctggatccgccc 274  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  13834166 attttagccccacatgtaccaaatgtctggatccgccc 13834129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 45616058 - 45616098
Alignment:
Q  237 attttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||||| ||||||| |||||||||| ||||||    
T  45616058 attttagccccacatgtaccaaatgtctggatccacccctg 45616098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 277
Target Start/End: Original strand, 26285756 - 26286012
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    ||||||||||||| || ||| |||| |||||||| |||  ||||||||| || ||||||| ||| |||||| ||||| | |||||||||| | |||||||    
T  26285756 gtgaagagtaaccaatgtaacaaaa-tgggtgattagtggctaaatgactgtcttgtaacatatgtagaaagatatgttcttttaacaattagcaatgat 26285854  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    ||  ||||| ||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  26285855 gtccttttaactcattttcaacaaatggataggaaacgattttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgcatt 26285954  T
Q  223 attg---tttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||   ||| |||||||||| ||||||||||||| | ||||||||||||||||||||    
T  26285955 attgctatttttttgaaatttaagccccacatatatctaaagtctggatccgcccctg 26286012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 23 - 278
Target Start/End: Complemental strand, 7856670 - 7856413
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||||||| |||| ||||||||||||  ||||||||| || |||||||||||||||||| | ||| | |||||||||| ||||||||     
T  7856670 gtgaagagtaacctatataacaaaa-tgggtgatcagtggctaaatgactgtcttgtaacttatatagaaagagatgttcttttaacaattaacaatgac 7856572  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaa---ttttatttcatatttttaatatagtttgc 219  Q
    || |||||| |||||||| |||||||||||| ||||||| ||| ||| | ||||||||||||||||||   ||||||||  ||||||||||||| |||||    
T  7856571 gtcattttagctcatttttaacaaatggataggagacgatttttattataatgtattgtatcaaacaatatttttattt-ttatttttaatataatttgc 7856473  T
Q  220 aatattgtttctttgaaattttagccccaca-tataccaaaagtctggatccgcccctga 278  Q
    | ||||||||||||||||||||||| ||| | |||||| |||||| ||||||||||||||    
T  7856472 attattgtttctttgaaattttagctccaaattatacctaaagtccggatccgcccctga 7856413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 24310047 - 24309801
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||| ||| |||||||| ||| ||||| ||   |||||||  || |||||||||| ||||||| | ||| | |||||||||| |||||||||    
T  24310047 gtgaagagtaacatatgtaataaaa-tggatgatcggtggttaaatgaatgtcttgtaacttacatagaaagagatgttcttttaacaattaacaatgat 24309949  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    || |||||  || |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  24309948 gtgattttgacttattttcaacaaatggataggagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagtttgcatt 24309849  T
Q  223 attgtttctttgaaattttagccccacatataccaaaagtctggatcc 270  Q
    ||||||||||||||||||||||  | ||| |||| |||||||||||||    
T  24309848 attgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 36475635 - 36475385
Alignment:
Q  26 aagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgtt 125  Q
    ||||||||||||| ||| |||| || |||||||||   ||||  ||||| |||||||||||||| ||| | ||| | |||||||||| | |||||||||     
T  36475635 aagagtaacctatgtaacaaaa-tgagtgatcagttgataaacaaccgtcttgtaacttatataaaaagagatgttcttttaacaattagcaatgatgtc 36475537  T
Q  126 attttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 225  Q
    |||||  |||||||| |||||||| ||  ||||||| |||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||  ||||    
T  36475536 attttcgctcatttttaacaaatgaatgggagacgattttcattgtagtgtattgtatcaaacaatgttatttcttatttttaatatagtttgcgttatt 36475437  T
Q  226 gtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||| |||||    
T  36475436 gtttctttgaaattttaaccccacatataccaaaaatctagatccgtccctg 36475385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 277
Target Start/End: Complemental strand, 23778410 - 23778173
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||||| ||||||| ||||| |||| ||||||||||||| | ||| | |||||||||| | ||||||||| |||||| ||||||||||||    
T  23778410 aaaatgggtgatcagtgactaaataaccgttttgttacttatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaac 23778311  T
Q  145 aaatggatatgagacgactttcat-----tgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatt 239  Q
    ||||||||| ||||| | ||| ||     ||| ||||||||||||||||||| ||||||| |||||||||||||||||| | |||| ||||||||||| |    
T  23778310 aaatggataagagaccatttttattgtaatgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgtattattttttctttgaaaat 23778211  T
Q  240 ttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||| |  || ||||| ||||||||||||||||| ||||    
T  23778210 ttaacttcaaatatatcaaaagtctggatccgctcctg 23778173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 25032175 - 25032286
Alignment:
Q  163 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 262  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||| || |||||| ||||||| |||||||| ||||||||||||| || |||||||    
T  25032175 tttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatgtaatttgcattattgttcctttgaaaatttagccccacatgtatcaaaagt 25032274  T
Q  263 ctggatccgccc 274  Q
    || |||||||||    
T  25032275 ctagatccgccc 25032286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 36478213 - 36478319
Alignment:
Q  119 tgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttg 218  Q
    |||||| |||||| ||||||||||||||||||||   |||| | ||| ||||| | ||||||||||||||||| ||||||| ||||||||||||||||||    
T  36478213 tgatgtcattttaactcattttcaacaaatggatcaaagacaattttaattgtaacgtattgtatcaaacaatattatttcttatttttaatatagtttg 36478312  T
Q  219 caatatt 225  Q
    |||||||    
T  36478313 caatatt 36478319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 52308867 - 52308953
Alignment:
Q  105 ttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 191  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||| |||| || ||||||||| ||||| |||||||||||||    
T  52308867 ttaacaattaacaatgatgtcattttagctcattttcaacaaatggataggagatgattttcattgtaatgtagtgtatcaaacaat 52308953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 30136644 - 30136508
Alignment:
Q  135 cattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 233  Q
    ||||||||||||||||||| ||||| | ||||||||  || ||||||||||||||||| ||||||| ||||||| |||| ||||||| |||| ||| |||    
T  30136644 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatt-ttttttt 30136546  T
Q  234 gaaattttagccccacatataccaaaagtctggatccg 271  Q
     ||||||||| | |||||||||| || |||| ||||||    
T  30136545 aaaattttagtcacacatataccgaatgtctagatccg 30136508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 30142773 - 30142637
Alignment:
Q  135 cattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 233  Q
    ||||||||||||||||||| ||||| | ||||||||  || ||||||||||||||||| ||||||| ||||||| |||| ||||||| |||| ||| |||    
T  30142773 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatt-ttttttt 30142675  T
Q  234 gaaattttagccccacatataccaaaagtctggatccg 271  Q
     ||||||||| | |||||||||| || |||| ||||||    
T  30142674 aaaattttagtcacacatataccgaatgtctagatccg 30142637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 30146195 - 30146059
Alignment:
Q  135 cattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 233  Q
    ||||||||||||||||||| ||||| | ||||||||  || ||||||||||||||||| ||||||| ||||||| |||| ||||||| |||| ||| |||    
T  30146195 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatt-ttttttt 30146097  T
Q  234 gaaattttagccccacatataccaaaagtctggatccg 271  Q
     ||||||||| | |||||||||| || |||| ||||||    
T  30146096 aaaattttagtcacacatataccgaatgtctagatccg 30146059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 38573108 - 38572987
Alignment:
Q  63 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 162  Q
    |||||||| |||  ||||||||||||||||| | ||| | | |||||||| | ||||| ||| |||||| ||||||||||||||||||||| |||||||     
T  38573108 ctaaatgatcgtcgtgtaacttatatagaaagagatgttctattaacaattagcaatgctgtcattttagctcattttcaacaaatggataggagacgat 38573009  T
Q  163 tttcattgtgatgtattgtatc 184  Q
    ||||||||| ||| ||||||||    
T  38573008 tttcattgtaatgcattgtatc 38572987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 395922 - 396019
Alignment:
Q  117 aatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgt-gatgtattgtatcaaacaattttatttcatatttttaatata 213  Q
    ||||||||||||||| ||||||||||||||||||||   |||| | |||||| ||  ||||||||||||||||||| ||||||| |||||||| ||||    
T  395922 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtata 396019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 36477977 - 36478106
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata--gaaatatatgatgttttaacaataaacaatg 120  Q
    |||||||||||||||| ||| |||| ||| |||||||| ||||||||  ||| ||||||||||||||  |||| | ||| | |||||||||| |  ||||    
T  36477977 gtgaagagtaacctatgtaacaaaa-tggatgatcagtgactaaatgttcgttttgtaacttatatatagaaaaagatgttcttttaacaattagtaatg 36478075  T
Q  121 atgttattttacctcattttcaacaaatgga 151  Q
    |||| |||||| ||||||||||| |||||||    
T  36478076 atgtcattttagctcattttcaagaaatgga 36478106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 6714403 - 6714522
Alignment:
Q  124 ttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    ||||||||  ||||||||||||||| |||||||||| | ||||||||| | ||||||  ||||||  || ||||||| ||||||||||||| ||  || |    
T  6714403 ttattttaattcattttcaacaaatagatatgagacaattttcattgtaattgtattacatcaaa-tatgttatttcttatttttaatataattaacatt 6714501  T
Q  223 attgtttctttgaaattttag 243  Q
    ||| ||||||| |||||||||    
T  6714502 attatttctttaaaattttag 6714522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 35504208 - 35504275
Alignment:
Q  192 tttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaa 259  Q
    ||||| || ||||||||||||| |||||| |||| ||||||| ||||||||||| |||||| ||||||    
T  35504208 tttatgtcttatttttaatataatttgcattattttttcttttaaattttagccacacatacaccaaa 35504275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 19832038 - 19832112
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccc 275  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||| ||| ||| |  || |||||||||||||||    
T  19832038 tatttttaatataatttgcattattgtttcttcaaaattttagcctcacttatccttaatgtctggatccgcccc 19832112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 25070674 - 25070800
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  25070674 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 25070773  T
Q  145 aaatggatatgagacgactttcattgt 171  Q
    ||||||||   |||||| |||||||||    
T  25070774 aaatggatggcagacgattttcattgt 25070800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 26903300 - 26903174
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  26903300 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 26903201  T
Q  145 aaatggatatgagacgactttcattgt 171  Q
    ||||||||   |||||| |||||||||    
T  26903200 aaatggatgacagacgattttcattgt 26903174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 36617740 - 36617866
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  36617740 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 36617839  T
Q  145 aaatggatatgagacgactttcattgt 171  Q
    ||||||||   |||||| |||||||||    
T  36617840 aaatggatggcagacgattttcattgt 36617866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 8034746 - 8034690
Alignment:
Q  212 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggat 268  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| |||||||||||    
T  8034746 tagtttgcattattatttatttgaaattttagctccacatgtacctaaagtctggat 8034690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 23795005 - 23794964
Alignment:
Q  127 ttttacctcattttcaacaaatggatatgagacgactttcat 168  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||    
T  23795005 ttttagctcattttcaacaaatggataagagacgattttcat 23794964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 35502481 - 35502537
Alignment:
Q  103 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagac 159  Q
    |||||| ||| | ||||| |||||||||| |||||||| |||||||||||| |||||    
T  35502481 ttttaaaaattagcaatgctgttattttaactcatttttaacaaatggatacgagac 35502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 44873456 - 44873203
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||| ||| |||| |||||||| |||   ||||| ||| | |||||||||  ||||||| | ||| | |||||||||| | |||| ||    
T  44873456 gtgaagagtaacctatgtaacaaaa-tgggtgattagtggttaaataaccatcttgtaacttgcatagaaaaagatgttcttttaacaattagcaatcat 44873358  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    ||||||||| |||||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  44873357 gttattttaactcattttcaacaaatggatagaagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagtttgcatt 44873258  T
Q  223 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||| |||||||||| || ||| |||| |||||||| |||||||||||    
T  44873257 attgtttctttaaaattttagctccgcatgtacctaaagtctgaatccgcccctg 44873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 29866336 - 29866084
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatat-atgatgttttaacaataaacaatga 121  Q
    |||||||||||||||| ||| |||| |||||||||| |  |||||||||||| ||||||| |||| ||||| |  ||| | |||||| ||| || |||||    
T  29866336 gtgaagagtaacctatgtaacaaaa-tgggtgatcaatggctaaatgaccgtcttgtaacatatacagaaaaaagatgttcttttaaaaattaataatga 29866238  T
Q  122 tgttattttacctcattttcaacaaatggatatgagacgac--tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgc 219  Q
    ||| |||||| ||||||||||||||||||||  |||| ||   ||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  29866237 tgtcattttagctcattttcaacaaatggatcggagatgaaattttcattgtaatgtattgtatcaaacaatattatttcttatttataatatagtttgc 29866138  T
Q  220 aatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 273  Q
    | |||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29866137 attattttttctttaaaagtttagccccacatataccaaaagtctggatccgcc 29866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 10381592 - 10381343
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||| ||| |||||||| ||||||||||||  ||||| ||| || |||||||||||||| ||| | ||| | |||||||||| |||||||||    
T  10381592 gtgaagagtaacttatgtaataaaa-tgggtgatcagtggctaaacgactgttttgtaacttatatataaacagatgttattttaacaattaacaatgat 10381494  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    || ||||||  ||||||||||||||| |||| ||||| | ||| ||||| ||||||| ||||||||||| ||| ||| ||||||||||||||||| || |    
T  10381493 gtcattttagttcattttcaacaaatagataagagacaattttgattgtaatgtattatatcaaacaatgttacttcttatttttaatatagtttacatt 10381394  T
Q  223 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 273  Q
    ||||||||||||||||||||||| |||| |||| |||  ||| ||||||||    
T  10381393 attgtttctttgaaattttagcctcacaaatactaaatatctagatccgcc 10381343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 79 - 277
Target Start/End: Original strand, 7681353 - 7681551
Alignment:
Q  79 taacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtat 178  Q
    ||||||||||||||| ||||| | |||||||||| | ||||||||| ||||||   ||||||||||||||||||| || |||| ||||||||| || |||    
T  7681353 taacttatatagaaagatatgttcttttaacaattagcaatgatgtcattttagaacattttcaacaaatggataggaaacgattttcattgtaatatat 7681452  T
Q  179 tgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||| ||||||| | |||||||||||||||| | |||| |||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  7681453 tgtatcaaacaatgttatttcttgtttttaatatagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccgcccctg 7681551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 271
Target Start/End: Original strand, 32161349 - 32161573
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    ||||||||| || ||| |||||||||| || ||||||||| |||| ||| | ||| | |||||||| | |  | ||||||||||||| ||||||||||||    
T  32161349 aaaatgggttattagtgactaaatgactgtcttgtaacttgtataaaaagagatgttcttttaacatttagtattgatgttattttatctcattttcaac 32161448  T
Q  145 aaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagc 244  Q
    |||  |||||||||||| |||  || | ||||||||||||||||||| ||||||| ||||||||||||| |||||| |||| |||||   ||||||||||    
T  32161449 aaa--gatatgagacgattttagttataatgtattgtatcaaacaatgttatttcttatttttaatataatttgcattattttttctccaaaattttagc 32161546  T
Q  245 cccacatataccaaaagtctggatccg 271  Q
    ||||||| || |||| |||| ||||||    
T  32161547 cccacatgtatcaaatgtctagatccg 32161573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 24556878 - 24557074
Alignment:
Q  63 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 162  Q
    |||||||||||| |||||||||||||| ||| |  |  | |||||||||| | |||| |||  | ||||| ||||||||||||||||||||  |  |||     
T  24556878 ctaaatgaccgtcttgtaacttatatataaaaaagttttcttttaacaattagcaataatgacaatttacttcattttcaacaaatggatagaaatcgat 24556977  T
Q  163 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaa 259  Q
    ||||||||| ||||||||||||||||||| ||||||  ||||||||||||| |||  | ||||||||||||||||||||  || |||||||| ||||    
T  24556978 tttcattgtaatgtattgtatcaaacaatgttatttattatttttaatataatttaaattattgtttctttgaaatttttaccacacatatatcaaa 24557074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 6978410 - 6978511
Alignment:
Q  168 ttgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctgga 267  Q
    |||| ||||||| ||||||||||| ||||||| ||||||||||||||||| || || ||||||||||||| |||||||||||||||| |||||| |||||    
T  6978410 ttgtaatgtattatatcaaacaatattatttcttatttttaatatagtttacattactgtttctttgaaaatttagccccacatatatcaaaagactgga 6978509  T
Q  268 tc 269  Q
    ||    
T  6978510 tc 6978511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 11993687 - 11993773
Alignment:
Q  105 ttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 191  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||| ||| |||| |||||||||||| ||||| |||||||||||||    
T  11993687 ttaacaattaacaatgatgtcattttagctcattttcaacaaatgtataggagatgactttcattgtaatgtagtgtatcaaacaat 11993773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 29841154 - 29841304
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-t 174  Q
    |||||||||||||||||| ||||| | |||||| ||| | ||  | |||||||||| | |||||||||||||| |||||||||| | ||||||| | | |    
T  29841154 ttgtaacttatatagaaagatatgttcttttaaaaattagcaccgttgttattttaacccattttcaacaaatagatatgagacaattttcattataatt 29841253  T
Q  175 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 225  Q
     |||| ||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  29841254 atattatatcaaacaatgttatttcttattttttatatagtttgcattatt 29841304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 34696984 - 34697054
Alignment:
Q  121 atgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 191  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  34696984 atgtcattttatctcattttcaacaaatggatatgagacgattttcattgtaatatattgtatcaaacaat 34697054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 243
Target Start/End: Original strand, 7388102 - 7388283
Alignment:
Q  63 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 162  Q
    |||||||||||| |||||||||||||||||||| ||| | |||||| ||| | ||||| | |||||||| | | |||||||||| |||| |  |||| |     
T  7388102 ctaaatgaccgtcttgtaacttatatagaaataaatgtttttttaaaaattagcaatgtttttattttagcacgttttcaacaattggaaagaagacaat 7388201  T
Q  163 tttcattgtga-tgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttag 243  Q
    ||| ||||| | ||||||  |||||||||| ||| ||| ||||||||||||| | |||| |||| ||||| ||| |||||||    
T  7388202 ttttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatctgcattattttttctctgatattttag 7388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 2148477 - 2148338
Alignment:
Q  103 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcat 201  Q
    |||||| ||| | |||||||| |||||||  || ||||||||||||| |||  |||  | ||||||||| || |||||| ||||| |||| ||||||| |    
T  2148477 ttttaaaaattagcaatgatgctattttagttcgttttcaacaaatgtataatagattattttcattgtaattgtattgcatcaatcaatgttatttctt 2148378  T
Q  202 atttttaatatagtttgcaatattgtttctttgaaatttt 241  Q
    ||||||| |||| |||||| ||| ||||||||||||||||    
T  2148377 atttttagtataatttgcattatagtttctttgaaatttt 2148338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 6802716 - 6802830
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    ||||||||||||| ||  ||||||| |||| |||||||||||||| ||| | ||| | |||||||||| | |||||| || ||||||| ||||||| |||    
T  6802716 aaaatgggtgatcggtggctaaatgtccgtcttgtaacttatataaaaagagatgttattttaacaattagcaatgaagtcattttacttcatttttaac 6802815  T
Q  145 aaatggatatgagac 159  Q
    ||||| ||| |||||    
T  6802816 aaatgaataggagac 6802830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 43421590 - 43421486
Alignment:
Q  117 aatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagt 215  Q
    |||| ||| ||||||  ||||||||||||||| ||||  |||||| ||| ||||| || |||||| |||||||||| ||||| | |||||||||||||||    
T  43421590 aatgttgtaattttagttcattttcaacaaatagatagaagacgatttttattgtaattgtattgcatcaaacaatgttattacttatttttaatatagt 43421491  T
Q  216 ttgca 220  Q
    |||||    
T  43421490 ttgca 43421486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 45486158 - 45486284
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  45486158 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 45486257  T
Q  145 aaatggatatgagacgactttcattgt 171  Q
    ||||||||   |||||| |||||||||    
T  45486258 aaatggatggcagacgattttcattgt 45486284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 35990865 - 35990914
Alignment:
Q  142 aacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 191  Q
    ||||||| |||| ||||||| ||||||||| |||||||||||||||||||    
T  35990865 aacaaatagataggagacgattttcattgttatgtattgtatcaaacaat 35990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 6802833 - 6802888
Alignment:
Q  204 ttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaa 259  Q
    ||||||||||||||||| ||||||||||||  |||||||| | || ||||||||||    
T  6802833 ttttaatatagtttgcattattgtttctttctaattttagtcacaaatataccaaa 6802888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 7392203 - 7392126
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 279  Q
    ||||||||||||| |||||| |||| ||||||  ||||||||  || |||||||| ||| ||||||||||| |||||||    
T  7392203 tatttttaatataatttgcattattatttcttcaaaatttta-acctacatatactaaatgtctggatccgtccctgat 7392126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 34697094 - 34697148
Alignment:
Q  222 tattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccct 276  Q
    |||| ||| ||| |||||||||| |||||| |||| |||||||||||||||||||    
T  34697094 tattatttatttaaaattttagctccacatgtacctaaagtctggatccgcccct 34697148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 33235693 - 33235596
Alignment:
Q  55 atcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 152  Q
    |||||| | ||||||| |||  |||||||| |||||||| | ||| | ||  | |||| | ||||| |||||||||| ||||||||||||||||||||    
T  33235693 atcagtgattaaatgaacgtcgtgtaacttttatagaaagagatgtttttgaaccaattagcaatggtgttattttagctcattttcaacaaatggat 33235596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 11463243 - 11463191
Alignment:
Q  119 tgatgttattttacctcattttcaacaaatggatatgagacgactttcattgt 171  Q
    |||||||||| || ||||||||||||||||||||   |||||| |||||||||    
T  11463243 tgatgttattctagctcattttcaacaaatggatggtagacgattttcattgt 11463191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 11995259 - 11995319
Alignment:
Q  211 atagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccg 271  Q
    |||||||| | |||| ||| ||| |||||||||| ||||||||||| ||||| ||||||||    
T  11995259 atagtttgtattattatttatttaaaattttagctccacatatacctaaagtttggatccg 11995319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 37042536 - 37042604
Alignment:
Q  174 tgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatttta 242  Q
    |||||||||| ||| ||| || |||| ||||||||||||| | | || |||| ||||||||||||||||    
T  37042536 tgtattgtattaaataatattttttcttatttttaatataatctacattattttttctttgaaatttta 37042604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 9539548 - 9539744
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||| ||| |||| ||| |||||| | ||||||||||||||| |||||||||||| ||| ||||||| |||||||||||| |||||||    
T  9539548 gtgaagagtaacctatgtaacaaaa-tggatgatcaatgactaaatgaccgtatcgtaacttatataaaaagatatgatcttttaacaataagcaatgat 9539646  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 220  Q
     |||||||| ||||||||||||||||||||| |||| || ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||    
T  9539647 attattttagctcattttcaacaaatggataagagatgattttcattgtaatgtattgtatcaaacgatgttatttcatatttttaatatagtttgca 9539744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 45 - 277
Target Start/End: Original strand, 27464214 - 27464446
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    ||||||||||||||||  |||||| ||||| |||||||||||||||||| | ||  | |||||||||| |||||||| || ||||||  |||||||||||    
T  27464214 aaaatgggtgatcagtggctaaataaccgtcttgtaacttatatagaaaaagatattcttttaacaattaacaatgacgtcattttagttcattttcaac 27464313  T
Q  145 aaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagc 244  Q
    |||| ||||  |||||  ||| ||||||||||||||||||||||||  ||||||| |||||| ||||||||||| | | |||||| ||||||||||||||    
T  27464314 aaatagataatagacggttttaattgtgatgtattgtatcaaacaacgttatttcttattttaaatatagtttgtattgttgtttatttgaaattttagc 27464413  T
Q  245 cccacatataccaaaagtctggatccgcccctg 277  Q
    | ||||| ||||||| |||| ||||| ||||||    
T  27464414 ctcacatgtaccaaatgtctagatcctcccctg 27464446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 8065151 - 8064906
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||| |||||||| ||| |||||| |   ||||||||||| || ||||||||||| ||| | ||| | |||||||||| | |||||||    
T  8065151 gtgaagagtaacctatgtaataaaa-tggatgatcattggttaaatgaccgtcttataacttatataaaaagagatgttcttttaacaattagcaatgat 8065053  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    || |||||  |||||| ||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||| | |    
T  8065052 gtcattttcgctcattctcaaccaatggataggagacgattttcattgtaatgtattgtatcaaacaatgtaatttcttatttttaatatagtttgtatt 8064953  T
Q  223 attgtttctttgaaattttagccccacatataccaaaagtctggatc 269  Q
    |||| || |||   |||||| ||||||||||| | ||||||||||||    
T  8064952 attggtttttttttattttaaccccacatatatctaaagtctggatc 8064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 10781246 - 10781348
Alignment:
Q  118 atgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagttt 217  Q
    ||||||| |||||| | |||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  10781246 atgatgtcattttagcacattttcaacaaatagatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagttt 10781345  T
Q  218 gca 220  Q
    |||    
T  10781346 gca 10781348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 10781104 - 10781235
Alignment:
Q  24 tgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata--gaaatatatgatgttttaacaataaacaatga 121  Q
    ||||||||||||||| ||| |||| | ||||||||||  |||||||||||| ||||||||||||||  |||| ||||| | |||||||||| | ||| ||    
T  10781104 tgaagagtaacctatgtaacaaaa-taggtgatcagtggctaaatgaccgtcttgtaacttatatatagaaagatatgttcttttaacaattagcaacga 10781202  T
Q  122 tgttattttacctcattttcaacaaatggatat 154  Q
    | | |||||| ||||||||||||||||||||||    
T  10781203 tttcattttaactcattttcaacaaatggatat 10781235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 23347876 - 23347795
Alignment:
Q  175 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatatacc 256  Q
    |||||| |||||||||| ||||||| ||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  23347876 gtattgcatcaaacaatgttatttcttatatttaatatagtttgcattattgtttatttgaaattttagccacacatatacc 23347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 9539762 - 9539831
Alignment:
Q  208 aatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||| |||||||||||||||||||||  | ||||||||| |||||||||||||||||||||    
T  9539762 aatatagtttgcattattgtttctttgaaattttaatctcacatatactaaaagtctggatccgcccctg 9539831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 43909377 - 43909454
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctga 278  Q
    ||||||||||||| |||||| |||||||||||  ||||||||| ||||||||||| ||| ||||||||||||||||||    
T  43909377 tatttttaatataatttgcattattgtttcttcaaaattttagtcccacatatactaaatgtctggatccgcccctga 43909454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 9516767 - 9516845
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 279  Q
    ||||||||||||| |||||| |||||||||||  |||||||||||||| |||||| ||| |||||||||||||| ||||    
T  9516767 tatttttaatataatttgcattattgtttcttcaaaattttagccccatatatactaaatgtctggatccgcccttgat 9516845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 34912366 - 34912296
Alignment:
Q  184 caaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatata 254  Q
    |||| ||||||||||| |||||||||||||| ||| | |||||||||||| ||||||||||||| ||||||    
T  34912366 caaataattttatttcttatttttaatatagcttgtattattgtttctttaaaattttagccccgcatata 34912296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 35438901 - 35438978
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctga 278  Q
    ||||||||||||| |||||| |||||||||||  || |||||||||| | ||||| ||| ||||||||||||||||||    
T  35438901 tatttttaatataatttgcattattgtttcttcaaatttttagccccgcgtatactaaatgtctggatccgcccctga 35438978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 281148 - 281219
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcc 273  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||| ||| |||||||||    
T  281148 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatactaaatgtc-ggatccgcc 281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 23353503 - 23353428
Alignment:
Q  80 aacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatg 155  Q
    |||||||||||||| | ||| | |||||| | | | |||| ||||||||||| ||||||||||||||||| |||||    
T  23353503 aacttatatagaaagaaatgttcttttaatatttagcaattatgttattttaactcattttcaacaaatgaatatg 23353428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 39299269 - 39299340
Alignment:
Q  208 aatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctgat 279  Q
    ||||||||||||| |||||||| ||| |||||||| | |||||| |||| ||||||| ||| || |||||||    
T  39299269 aatatagtttgcattattgtttttttaaaattttaactccacatgtacctaaagtctagattcgaccctgat 39299340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 44352815 - 44352861
Alignment:
Q  231 tttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||||| ||||||||| ||| |||| ||||||||||||    
T  44352815 tttgaaattttagccacacatatactaaatgtctagatccgcccctg 44352861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 25031116 - 25031052
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatat 88  Q
    ||||||| |||||||| ||| |||| |||||||| ||| |||||||||| || |||||||||||||    
T  25031116 gtgaagattaacctatgtaacaaaa-tgggtgataagtgactaaatgacggtcttgtaacttatat 25031052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 10781365 - 10781401
Alignment:
Q  208 aatatagtttgcaatattgtttctttgaaattttagc 244  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  10781365 aatatagtttgcattattgtttctttaaaattttagc 10781401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 13241944 - 13242020
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||| ||| || |||| ||| ||  ||||||||| ||||| ||||| ||| |||||||||| ||||||    
T  13241944 tatttttaatataatttacattattattttttcaaaattttagtcccacgtatactaaatgtctggatccacccctg 13242020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 41006179 - 41006119
Alignment:
Q  216 ttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccct 276  Q
    ||||| ||| |||| |||||||||||||| |||||| |||  ||||||||||||| |||||    
T  41006179 ttgcattatcgtttttttgaaattttagctccacatgtacgtaaagtctggatccacccct 41006119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 36745110 - 36744855
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatata--gaaatatatgatgttttaacaataaacaatg 120  Q
    |||||||||||| ||| ||| |||| ||||||||| ||  |||||||||||| ||||||||||||||  |||| | ||| | |||||||||| | |||||    
T  36745110 gtgaagagtaacatatgtaacaaaa-tgggtgatcggtggctaaatgaccgtcttgtaacttatatatagaaagagatgttcttttaacaattagcaatg 36745012  T
Q  121 atgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 220  Q
    |||| |||||| |||||||||||||||||||||| |||||| ||| ||||| || |||||||||||||||| ||||||| || |||||||||||||||||    
T  36745011 atgtcattttagctcattttcaacaaatggatataagacgattttaattgtaatttattgtatcaaacaatattatttcttacttttaatatagtttgca 36744912  T
Q  221 atattgtttctttgaaa-ttttagccccacatataccaaaagtctggatccgcccct 276  Q
     |||||||||||| ||| ||||||| |||||| |||| |||||||| ||||| ||||    
T  36744911 ttattgtttctttaaaatttttagctccacatgtacctaaagtctgaatccgtccct 36744855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 26 - 268
Target Start/End: Complemental strand, 43144731 - 43144488
Alignment:
Q  26 aagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgtt 125  Q
    ||||||||||||| ||| |||| ||||||| || | |||||||||| || ||||||| |||||||||| | ||| | |||||||||| ||||| |||||     
T  43144731 aagagtaacctatgtaacaaaa-tgggtgaccaatgactaaatgactgtcttgtaacatatatagaaaaagatgttcttttaacaattaacaaagatgtc 43144633  T
Q  126 attttacctcattttcaacaaatggatatgagacgac--tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaata 223  Q
    | |||| ||||||||||||||||||||  |||| ||   ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||  |    
T  43144632 actttagctcattttcaacaaatggattggagaagaaattttcattgtaatgtattgtatcaaacaatgttatttcttatttataatatagtttgcataa 43144533  T
Q  224 ttgtttctttgaaattttagccccacatataccaaaagtctggat 268  Q
    || ||| ||||||| ||||||||||||||||||||||||||||||    
T  43144532 ttttttttttgaaagtttagccccacatataccaaaagtctggat 43144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 34751012 - 34751239
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    ||||||||||||| || ||| |||| ||| ||||| ||  |||||| ||||| |||||||||||||| ||| | |||   |||||||||| | |||||||    
T  34751012 gtgaagagtaacccatgtaacaaaa-tggatgatcggtggctaaataaccgttttgtaacttatatataaagagatgtaattttaacaattagcaatgat 34751110  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    || |||||| |||||||||||||||| || | |||| || ||||||| | ||||||||||||||||||| ||| ||| ||||||||||||| |||||| |    
T  34751111 gtcattttagctcattttcaacaaatagacacgagatgattttcattttaatgtattgtatcaaacaatgttacttcttatttttaatataatttgcatt 34751210  T
Q  223 attgtttctttgaaattttagccccacat 251  Q
    |||||||||||||||||||||||||||||    
T  34751211 attgtttctttgaaattttagccccacat 34751239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 273
Target Start/End: Complemental strand, 25819228 - 25818997
Alignment:
Q  46 aaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaata--tatgatgttttaacaataaacaatgatgttattttacctcattttcaa 143  Q
    ||||||| ||||| |  |||||||||||| ||||||||||| ||||||||  |||| | |||||||  | |  ||| | ||||||||| || ||||||||    
T  25819228 aaatgggagatcaatggctaaatgaccgtcttgtaacttatgtagaaatagatatgttcttttaactgttagtaataaagttattttagcttattttcaa 25819129  T
Q  144 caaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca--atattgtttctttgaaatttt 241  Q
    |||||||||| ||||| | |||||| || ||||||||| ||||||||| ||||||| ||||||||||||||||| ||  ||||| |||||||||||||||    
T  25819128 caaatggataggagacaattttcatcgtaatgtattgtttcaaacaatgttatttcctatttttaatatagtttacattatattttttctttgaaatttt 25819029  T
Q  242 agccccacatataccaaaagtctggatccgcc 273  Q
    |||||||||| ||||||| |||| ||||||||    
T  25819028 agccccacatgtaccaaatgtctagatccgcc 25818997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 126 - 277
Target Start/End: Complemental strand, 26459761 - 26459610
Alignment:
Q  126 attttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 225  Q
    |||||| ||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||| || |||| |||||||||||| |||||||  |||    
T  26459761 attttagctcattttcaacaaatggataggacacgattttcattgtaatgtattgtatcaaacaatgttctttcttatttttaatatggtttgcataatt 26459662  T
Q  226 gtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||||||||| | |||| |||| ||||||| |||||| |||||    
T  26459661 gtttctttgaaattttagctcaacatgtacctaaagtctcgatccgtccctg 26459610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 275
Target Start/End: Complemental strand, 5069995 - 5069761
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    ||||| |||||| |||  ||||| ||| || ||||||| |||||| ||| | ||| | |||||||||| ||||||||| | |||||| ||||||||||||    
T  5069995 aaaattggtgattagtggctaaacgactgttttgtaacctatatataaagagatgttattttaacaattaacaatgatatcattttaactcattttcaac 5069896  T
Q  145 aaatggatatgagacgactttcattgtgatgt----attgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattt 240  Q
    |||| || |||||| || ||||||||| | ||    ||||||||||||||| ||| ||| ||||||||||||||||| || |||||||||||| || |||    
T  5069895 aaatagacatgagatgattttcattgtaacgtattaattgtatcaaacaatattacttcttatttttaatatagtttacattattgtttctttaaatttt 5069796  T
Q  241 tagccccacatataccaaaagtctggatccgcccc 275  Q
    | ||||||||| ||||||| |||| ||||| ||||    
T  5069795 ttgccccacatgtaccaaatgtctagatccacccc 5069761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 252
Target Start/End: Complemental strand, 5569105 - 5568955
Alignment:
Q  103 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcat 201  Q
    |||||| ||| | ||||| |||||||||| ||||||||||||||||||||| ||||| | ||||||||| || |||||| ||||| |||| ||||||| |    
T  5569105 ttttaaaaattagcaatgttgttattttaactcattttcaacaaatggatacgagacaattttcattgtaattgtattgcatcaaccaatgttatttctt 5569006  T
Q  202 atttttaatatagtttgcaatattgtttctttgaaattttagccccacata 252  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||| ||||||    
T  5569005 atttttaatatagtttgcattattttttcttttaaattttagccacacata 5568955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 33824760 - 33824890
Alignment:
Q  116 caatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatag 214  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| || ||| || |||||||||| ||||||| |||||||||||||     
T  33824760 caatgatgttattttaactcattttcaacaaatgaataggagacgattttcattgtaattgtactgcatcaaacaatgttatttcttatttttaatatat 33824859  T
Q  215 tttgcaatattgtttctttgaaattttagcc 245  Q
    |||||| |||||||||||| |||||||||||    
T  33824860 tttgcattattgtttctttaaaattttagcc 33824890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 7607248 - 7607363
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 175  Q
    |||||||||||||||||| | ||| | | |||||||| ||||||||||| |||||| |||||||||||||||||||||  |||||| ||| ||||| |||    
T  7607248 ttgtaacttatatagaaagagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggatagaagacgatttttattgtaatg 7607347  T
Q  176 tattgtatcaaacaat 191  Q
    ||||||||||||||||    
T  7607348 tattgtatcaaacaat 7607363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 36633908 - 36634024
Alignment:
Q  163 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatata---gtttgcaatattgtttctttgaaattttagccccacatataccaaa 259  Q
    ||||||||| ||||||||||||||||||| ||||| | |||||||||||||    |||| | ||||| |||||||||| ||||||||||||||||  |||    
T  36633908 tttcattgtaatgtattgtatcaaacaatgttattacttatttttaatataattatttgtattattg-ttctttgaaaatttagccccacatatattaaa 36634006  T
Q  260 agtctggatccgcccctg 277  Q
    |||||||||||| |||||    
T  36634007 agtctggatccgtccctg 36634024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 980137 - 980302
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat- 174  Q
    |||||||||||| ||||| ||||  | |||||| | | ||||||||||||||||||   |||||||||||||| ||||  ||| || ||| ||||| ||     
T  980137 ttgtaacttatagagaaaaatat--tcttttaatagttaacaatgatgttattttagtacattttcaacaaatagataatagatgatttttattgtaatt 980234  T
Q  175 gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatttta 242  Q
    |||||  |||||||||| ||||||| ||||||||||||| |||||| |||| ||||||  ||||||||    
T  980235 gtattacatcaaacaatgttatttcttatttttaatataatttgcattattatttcttcaaaatttta 980302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 22536966 - 22536876
Alignment:
Q  187 acaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||| ||||||| | ||||||||| |||||||| |||||||||||| ||| ||||| ||||||| || |||||||||||||||| |||||    
T  22536966 acaatgttatttcttctttttaatacagtttgcattattgtttctttaaaaatttagtcccacatgtatcaaaagtctggatccgtccctg 22536876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 35676348 - 35676410
Alignment:
Q  182 atcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagcc 245  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  35676348 atcatacaatattatttcttatttttaatatagtttgcattatt-tttctttgaaattttagcc 35676410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 7607392 - 7607458
Alignment:
Q  211 atagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    |||||||| | |||| ||| |||||||||||||| |||||| |||| ||||||||||||| ||||||    
T  7607392 atagtttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatccacccctg 7607458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 29670090 - 29670020
Alignment:
Q  79 taacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatg 149  Q
    ||||||||||||||| | ||| | |||||||||| | |||| ||||||||||| || ||||||||||||||    
T  29670090 taacttatatagaaaaagatgttcttttaacaattatcaataatgttattttagcttattttcaacaaatg 29670020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 39509220 - 39509128
Alignment:
Q  134 tcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 225  Q
    ||||||||||||||| |||   |||| | ||||||||| || ||||||||||||||||| |||| || ||||||| ||||| |||||| ||||    
T  39509220 tcattttcaacaaattgatggaagacaattttcattgtaattgtattgtatcaaacaatgttatatcttatttttcatataatttgcattatt 39509128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 32033145 - 32032893
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||| ||| |||| ||| |||||| | ||||| ||||| | |||||||||||||||||| | ||| | |||||||||| |  | ||||    
T  32033145 gtgaagagtaacctatgtaacaaaa-tggatgatcactgactaattgaccatcttgtaacttatatagaaagagatgttcttttaacaattagtactgat 32033047  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    || |||||| |||||||| |||||||||||| | ||||| ||||||| | ||||||||||||||||||| ||||||| |||||||||||||| ||| | |    
T  32033046 gtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttgtatt 32032947  T
Q  223 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcccct 276  Q
    ||||||| ||| ||| ||||||| ||||| ||||||||||||||||||||||||    
T  32032946 attgtttatttaaaaatttagcctcacatgtaccaaaagtctggatccgcccct 32032893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 76 - 276
Target Start/End: Complemental strand, 7700457 - 7700258
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 175  Q
    |||||||||||||||||| | ||| | |||||||||| | ||||||||| |||||| ||||||||||||| ||| |||||||| || ||||||||  |||    
T  7700457 ttgtaacttatatagaaaga-atgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaatatgagatgattttcattgcaatg 7700359  T
Q  176 tattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccc 275  Q
    |||||||||||||||| ||||||| ||||||| ||||||||| || |||||||||||||||||||||||| |||||||| |||| || | ||||||||||    
T  7700358 tattgtatcaaacaatgttatttcttattttttatatagtttacattattgtttctttgaaattttagccacacatatatcaaatgtgtagatccgcccc 7700259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 64 - 270
Target Start/End: Original strand, 34878614 - 34878821
Alignment:
Q  64 taaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgact 163  Q
    ||||||| ||| |||||||||||||||||||||||| | |||||||||| |||||||| ||  ||||| ||||||||||||||||| |||||| |  | |    
T  34878614 taaatgatcgtcttgtaacttatatagaaatatatgttcttttaacaattaacaatgacgtctttttaactcattttcaacaaatgaatatgaaagaatt 34878713  T
Q  164 ttcattgtgatgtattgtatcaaac-aattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 262  Q
    |  ||||| ||  |||||||||||| ||| ||||||| |||||||| |||||| | || |||||||||||| |||||||||||||| |||||||||| ||    
T  34878714 tatattgtaattcattgtatcaaacaaatcttatttcttatttttagtatagtcttcattattgtttctttaaaattttagccccatatataccaaatgt 34878813  T
Q  263 ctggatcc 270  Q
    || |||||    
T  34878814 ctagatcc 34878821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 18703633 - 18703822
Alignment:
Q  64 taaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgact 163  Q
    ||||||||||| ||||||||||| |||||| | ||| | |||||||||| | ||||| | |||||||  |||||||| |||||||||||| ||||| | |    
T  18703633 taaatgaccgtcttgtaacttatttagaaagagatgttcttttaacaattagcaatgtttttatttttgctcatttttaacaaatggataggagacaatt 18703732  T
Q  164 ttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtc 263  Q
    ||||||||     |||| |||||||||| |       |||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| |||    
T  18703733 ttcattgt----aattgcatcaaacaatgt-------tatttttaatatagtttgcattattgtttctttgaaattttagccacacgtatatcaaatgtc 18703821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 34190145 - 34190030
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 175  Q
    |||||||||||||||||| | ||| | | |||||||| | ||||||| | ||||||  |||||||||||||||||||| ||||||| ||||||||| |||    
T  34190145 ttgtaacttatatagaaagagatgttctattaacaattagcaatgatatcattttagttcattttcaacaaatggataggagacgattttcattgtaatg 34190046  T
Q  176 tattgtatcaaacaat 191  Q
    ||||||||||||||||    
T  34190045 tattgtatcaaacaat 34190030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 11562194 - 11562084
Alignment:
Q  163 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 262  Q
    |||| |||| ||||| ||||||||||||| ||||||| |||||||||||||   |||| |||||||||||||||| | ||||| ||||| || |||||||    
T  11562194 tttcgttgtaatgtactgtatcaaacaatgttatttcttatttttaatata---tgcattattgtttctttgaaaatctagcctcacatgtatcaaaagt 11562098  T
Q  263 ctggatccgcccct 276  Q
    ||||||||||||||    
T  11562097 ctggatccgcccct 11562084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 27447736 - 27447879
Alignment:
Q  122 tgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgca 220  Q
    |||||||||| ||| ||| ||| |||| |||||||||| | ||||||||| || |||||  |||||||||| ||||||| ||||||||| ||| | ||||    
T  27447736 tgttattttagctcgtttccaataaatagatatgagacaattttcattgtaattgtattacatcaaacaatattatttcttatttttaacataatctgca 27447835  T
Q  221 atattgtttctttgaaattttagccccacatataccaaaagtct 264  Q
     |||| ||||||||||||||||||| |||||||| |||| ||||    
T  27447836 ttattttttctttgaaattttagccacacatatatcaaatgtct 27447879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 256
Target Start/End: Complemental strand, 38417871 - 38417728
Alignment:
Q  114 aacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatat 212  Q
    ||||||| || |||||||  |||||||||||||||||||| ||||| | ||||| ||| || |||||| ||||| |||  ||||||| ||||||||||||    
T  38417871 aacaatgttgctattttaaatcattttcaacaaatggataggagacaattttcactgtaattgtattgcatcaaccaaagttatttcttatttttaatat 38417772  T
Q  213 agtttgcaatattgtttctttgaaattttagccccacatatacc 256  Q
    || ||||| || | ||||||| ||||||||| | ||||||||||    
T  38417771 agcttgcattagtttttctttaaaattttaggcacacatatacc 38417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 3357064 - 3357161
Alignment:
Q  63 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacga 161  Q
    |||||| ||||| |||||||||||||||||| | ||| | |||||||||| | ||||||||| |||||| ||||||||||||||||||||| |||||||    
T  3357064 ctaaatcaccgtcttgtaacttatatagaaagagatgtt-ttttaacaattagcaatgatgtcattttatctcattttcaacaaatggataggagacga 3357161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 16639293 - 16639372
Alignment:
Q  185 aaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtct 264  Q
    ||||||| | ||||| |||||||||||||||||| | |||||||||||| ||||||||| |  |||||||||||| ||||    
T  16639293 aaacaatgtaatttcttatttttaatatagtttgtattattgtttctttaaaattttagtcatacatataccaaatgtct 16639372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 18458763 - 18458698
Alignment:
Q  212 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||| |||| ||| ||||| |||||||| ||||||||||| |||| |||||||||||||||    
T  18458763 tagtttgcattattatttatttgacattttagctccacatatacctaaagcctggatccgcccctg 18458698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 6141444 - 6141381
Alignment:
Q  214 gtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||| |||| ||| |||||||||||||| |||||| |||| |||||||||||| |||||||    
T  6141444 gtttgcattattatttatttgaaattttagctccacatgtacctaaagtctggatctgcccctg 6141381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 16639187 - 16639240
Alignment:
Q  103 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatga 156  Q
    |||||||||| |||||||||| |||||||  | |||||||||||||||||||||    
T  16639187 ttttaacaatcaacaatgatgctattttagttgattttcaacaaatggatatga 16639240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 33941572 - 33941814
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||| ||||| |||||||  ||||| ||||||  |||||||||||| |||||||||||||||||| | ||| | |||||||||| | |||||||    
T  33941572 gtgaagagtagcctatgtaataaa--tgggtaatcagtggctaaatgaccgtcttgtaacttatatagaaagaaatgttcttttaacaattagcaatgat 33941669  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    ||||||||| |||||||||||||||| |||| |||         ||||| ||||||| ||||||||||| ||||||| |||||||||||||||||| | |    
T  33941670 gttattttaactcattttcaacaaattgataggag---------attgtaatgtattttatcaaacaatgttatttcttatttttaatatagtttgtatt 33941760  T
Q  223 attgtttctttgaa-attttagccccacatataccaaaagtctggatccgcccc 275  Q
    ||||||| ||| ||  ||||||| ||||||||||| ||||||||||||||||||    
T  33941761 attgtttttttaaattttttagctccacatatacctaaagtctggatccgcccc 33941814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 30074563 - 30074786
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||| ||| |||| || ||||||| |  |||||||||| | |||||||||||||||||| | ||| | |||||||||| |||||||||    
T  30074563 gtgaagagtaacctatgtaacaaaa-tgagtgatcaatggctaaatgaccatcttgtaacttatatagaaagagatgttcttttaacaattaacaatgat 30074661  T
Q  123 gttattttacctcattttcaacaaatggatatgagac--gactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgca 220  Q
    || |||||| || |||||||||||||||||| |||||  || ||| ||||| |||||||||||||||| || || |||| ||||||||||||| ||||||    
T  30074662 gtcattttaacttattttcaacaaatggataggagacgagattttgattgtaatgtattgtatcaaacgatgttgtttcttatttttaatataatttgca 30074761  T
Q  221 atattgtttctttgaaattttagcc 245  Q
     |||  ||||||||||| |||||||    
T  30074762 ttatcttttctttgaaaatttagcc 30074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 34346852 - 34346960
Alignment:
Q  134 tcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttcttt 233  Q
    |||||||| ||||||||||||||||||| ||||| | | ||||||||||| ||||||| ||||||| |||||||||| ||||||||| ||||||||||||    
T  34346852 tcattttccacaaatggatatgagacgattttcactttaatgtattgtataaaacaatgttatttcttatttttaatgtagtttgcattattgtttcttt 34346951  T
Q  234 gaaatttta 242  Q
    |||||||||    
T  34346952 gaaatttta 34346960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 26824465 - 26824628
Alignment:
Q  117 aatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtatcaaacaattttatttcatatttttaatatagt 215  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||| | ||||||| |||||| ||| ||||||| |||||||||| ||||    
T  26824465 aatgatattattttacctcattttcaacaaatcgataggagacgattttcattgtaattgtattgcatcaaataatattatttcttatttttaatttagt 26824564  T
Q  216 ttgc--aatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    || |  | ||||||||||||| |||| ||| |  ||||||| |||| ||||||||| |||||||    
T  26824565 ttacatattattgtttctttggaattgtagtcatacatatatcaaatgtctggatcggcccctg 26824628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 2945330 - 2945519
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    ||||||||||||||| |||| |||| ||| ||||||||   ||||||| ||| ||||| ||||||||||||   ||  | |||||||||| | |||||||    
T  2945330 gtgaagagtaacctacataacaaaa-tggatgatcagtggttaaatgatcgtcttgtagcttatatagaaagtgattttcttttaacaattagcaatgat 2945428  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgac--tttcattgtgatgtattgtatcaaacaattttatttcatatttttaata 211  Q
    || ||||||  ||||||||||||||| |||| |||||||   ||| ||||| ||||||||||||||||||| ||||||| |||||||||||    
T  2945429 gtcattttaggtcattttcaacaaatagataggagacgagatttttattgtaatgtattgtatcaaacaatgttatttcttatttttaata 2945519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 103 - 274
Target Start/End: Original strand, 46090209 - 46090380
Alignment:
Q  103 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcata 202  Q
    |||||||||| |  || ||||| ||||||  |||||||||||||||| ||||||||||| ||||||||| |||||| ||| |||||||| ||||||  ||    
T  46090209 ttttaacaattactaaggatgtcattttaattcattttcaacaaatgaatatgagacgattttcattgtaatgtatcgtaccaaacaatgttatttttta 46090308  T
Q  203 tttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 274  Q
    |||||||||||||||| |  |||||||||||| ||| ||||   |||||||| |||| ||||  ||||||||    
T  46090309 tttttaatatagtttgtatcattgtttctttgtaatattagttacacatatatcaaatgtctttatccgccc 46090380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 24658590 - 24658431
Alignment:
Q  26 aagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgtt 125  Q
    ||||||||||||| ||| |||| ||| ||||| ||  |||||||||||| |||||||||||||||||| | ||| | | |||||| ||  |||||||||     
T  24658590 aagagtaacctatgtaacaaaa-tggatgatcggtggctaaatgaccgtcttgtaacttatatagaaagagatgttctattaacattag-caatgatgtc 24658493  T
Q  126 attttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaa 187  Q
    |||||| ||||||||||||||||||||| || |||| ||||||||| || ||||||||||||    
T  24658492 attttaactcattttcaacaaatggataggaaacgattttcattgtaatatattgtatcaaa 24658431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 277
Target Start/End: Original strand, 32221862 - 32222026
Alignment:
Q  116 caatgatgttattttacctcattttcaacaaatggatatgagac--gactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatata 213  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||  || | ||| ||| || ||||||| |||||||| ||||||| |||||||||||||    
T  32221862 caatgatgtcattttaactcattttcaacaaatggataggagacgagattctcaatgtaatttattgtaccaaacaatgttatttcttatttttaatata 32221961  T
Q  214 gtttgcaatattgt-ttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
     | | || |||| | || ||| ||| ||||||||||||| ||| |||||||||||||||||||||    
T  32221962 atatacattattttattttttaaaaatttagccccacatgtacaaaaagtctggatccgcccctg 32222026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 38300330 - 38300480
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaactt----atatagaaatatatgatgttttaacaataaacaatgatgttattttacctcatttt 140  Q
    ||||||| ||||||||  |||||||||||| |||||||||    ||||||||||| ||| | | |||||||| | ||||| ||| |||||| ||||||||    
T  38300330 aaaatggatgatcagtggctaaatgaccgtcttgtaacttacttatatagaaatagatgttttattaacaattatcaatgctgtcattttagctcatttt 38300429  T
Q  141 caacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 191  Q
    ||||||||||||| ||||||| ||||||||| ||  |||||||||||||||    
T  38300430 caacaaatggataggagacgattttcattgtaatacattgtatcaaacaat 38300480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 25233079 - 25232916
Alignment:
Q  63 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 162  Q
    |||||||| ||| |||||| ||||||| ||| | ||| | |||||| ||| | ||  | |||||||||| ||||||||||||||||||||| ||||| |     
T  25233079 ctaaatgatcgtcttgtaatttatataaaaagaaatgttcttttaaaaattagcagcgctgttattttaactcattttcaacaaatggataggagacaat 25232980  T
Q  163 tttcattgtgatg-tattgtatcaaacaattttatttcatatttttaatatagtttgcaatatt 225  Q
    ||||||||| ||  |||||||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  25232979 tttcattgtaattatattgtatcaaacaatgttatttcttatttttcatatagtttgcattatt 25232916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 274
Target Start/End: Complemental strand, 27080534 - 27080339
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 175  Q
    |||||||||||||| ||| ||||| | |||||||||| | || |||||| |||||| ||||||||||||||||  ||| ||||||| | | |||||  ||    
T  27080534 ttgtaacttatataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tg 27080438  T
Q  176 tattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 274  Q
    ||||||||||||||||  |||||| ||||||||| |||||||    ||||||||| ||||||||||| |||||  | ||||||| ||||  ||||||||    
T  27080437 tattgtatcaaacaatgatatttcttatttttaacatagtttaatttattgtttcattgaaattttatccccatttgtaccaaatgtcttaatccgccc 27080339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 274
Target Start/End: Original strand, 27197767 - 27197962
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatg 175  Q
    |||||||||||||| ||| ||||| | |||||||||| | || |||||| |||||| ||||||||||||||||  ||| ||||||| | | |||||  ||    
T  27197767 ttgtaacttatataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tg 27197863  T
Q  176 tattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 274  Q
    ||||||||||||||||  |||||| ||||||||| |||||||    ||||||||| ||||||||||| |||||  | ||||||| ||||  ||||||||    
T  27197864 tattgtatcaaacaatgatatttcttatttttaacatagtttaatttattgtttcattgaaattttatccccatttgtaccaaatgtcttaatccgccc 27197962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 39785590 - 39785484
Alignment:
Q  103 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtatcaaacaattttatttcat 201  Q
    |||||||||| | ||||| |||||||||| |||||||| ||||||||||||  |||||| ||||||||| | ||||||| |||||||||| ||||||| |    
T  39785590 ttttaacaattatcaatgttgttattttagctcatttttaacaaatggatagtagacgattttcattgtaattgtattgcatcaaacaatgttatttctt 39785491  T
Q  202 attttta 208  Q
    |||||||    
T  39785490 attttta 39785484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 7899478 - 7899402
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||| || ||||||||||||||    
T  7899478 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatactaaatgtttggatccgcccctg 7899402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 26050158 - 26050085
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 274  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||  ||| ||||||||||||||    
T  26050158 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatattaaatgtctggatccgccc 26050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 26059517 - 26059448
Alignment:
Q  201 tatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatcc 270  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||  ||| ||||||||||    
T  26059517 tatttttaatataatttgcattattgtttcttcaaaattttagccccacatatattaaatgtctggatcc 26059448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 1691818 - 1691671
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||| ||| ||| |||| ||| ||||||||   |||| | | || |||||||||||||| ||| | ||| | | |||||||| |||||||||    
T  1691818 gtgaagagtaacatatgtaacaaaattgg-tgatcagtggataaacggctgtcttgtaacttatatataaagagatgttctattaacaattaacaatgat 1691720  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgt 171  Q
     | |||||| ||||||||||||||||||||| |||| || || ||||||    
T  1691719 atcattttaactcattttcaacaaatggataggagatgatttacattgt 1691671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 40716946 - 40717008
Alignment:
Q  122 tgttattttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtat 183  Q
    |||||||||||||||||||||||||||||||||||||| | ||| ||||| | ||||||||||    
T  40716946 tgttattttacctcattttcaacaaatggatatgagacaatttttattgtaattgtattgtat 40717008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 10702724 - 10702659
Alignment:
Q  212 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    ||||||||| |||| ||| ||||| |||||||| ||||||||||| |||||| |||||||||||||    
T  10702724 tagtttgcattattatttatttgacattttagctccacatatacctaaagtcaggatccgcccctg 10702659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 2945846 - 2945917
Alignment:
Q  203 tttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccctg 277  Q
    |||||||||||||||||| ||||   ||||||||| ||||||| |  || |||||||||||||||||||||||||    
T  2945846 tttttaatatagtttgcattatt---tctttgaaaatttagcctcgtatgtaccaaaagtctggatccgcccctg 2945917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 49144016 - 49143956
Alignment:
Q  184 caaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagc 244  Q
    |||||||| ||||||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  49144016 caaacaatgttatttcttatttttaatatagtttgtattattttttctttaaaattttagc 49143956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 43265897 - 43266004
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||| |   ||||||| ||  ||||||||| |||||||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  43265897 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttatagaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 43265996  T
Q  145 aaatggat 152  Q
    ||||||||    
T  43265997 aaatggat 43266004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 10703218 - 10703280
Alignment:
Q  212 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 274  Q
    ||||||||| |||| ||| ||||| |||||| | ||||||||||| |||||||||||||||||    
T  10703218 tagtttgcattattatttatttgacattttaactccacatatacctaaagtctggatccgccc 10703280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 10512018 - 10512115
Alignment:
Q  55 atcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 152  Q
    |||||| | |||||||||||  |||||||| |||||||| | ||| | ||  | |||| | ||||| |||||||||| ||||||||||||||||||||    
T  10512018 atcagtgattaaatgaccgttgtgtaacttttatagaaagagatgttcttgaaccaattagcaatggtgttattttagctcattttcaacaaatggat 10512115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 1691598 - 1691539
Alignment:
Q  212 tagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccg 271  Q
    |||||| || |||| ||| |||||||||||||| ||||||||||| ||||||| ||||||    
T  1691598 tagttttcattattatttatttgaaattttagctccacatatacctaaagtctcgatccg 1691539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 39780992 - 39781087
Alignment:
Q  76 ttgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgt 171  Q
    ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||||||||||   |||||| |||||||||    
T  39780992 ttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgt 39781087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 6051186 - 6051154
Alignment:
Q  117 aatgatgttattttacctcattttcaacaaatg 149  Q
    ||||||||||||||| |||||||||||||||||    
T  6051186 aatgatgttattttatctcattttcaacaaatg 6051154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 16461644 - 16461804
Alignment:
Q  104 tttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatat 203  Q
    ||||||||| ||||||||||| |||| | ||||||||||||||||| ||| ||||| | ||||||||| || |||||||||||||||| ||||||| |||    
T  16461644 tttaacaattaacaatgatgtcatttaagctcattttcaacaaatgaataggagacaattttcattgtaatatattgtatcaaacaatgttatttcttat 16461743  T
Q  204 ttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtct 264  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||    
T  16461744 ttttaatatagtttgcattattgtttctttgaaattttagccccatatatatcaaacgtct 16461804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 14607698 - 14607926
Alignment:
Q  23 gtgaagagtaacctatataataaaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgat 122  Q
    |||||||||||||||| |||  ||| | | |||| ||| |||||||||  |||||||||||| ||| |||| ||||||| ||||||||||||  ||||||    
T  14607698 gtgaagagtaacctatgtaaccaaa-tagatgattagtgactaaatgaatgtattgtaacttgtattgaaagatatgat-ttttaacaataagaaatgat 14607795  T
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaat 222  Q
    ||||||||| ||||||||||||||||||||| ||||  | ||||||||| |||||||||||||||||||                      ||||||| |    
T  14607796 gttattttagctcattttcaacaaatggataggagaaaattttcattgtaatgtattgtatcaaacaat----------------------gtttgcatt 14607873  T
Q  223 attgtttctttgaaattttagccccacatataccaaaagtctggatccgcccc 275  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14607874 attgtttctttgaaattttagccccccatataccaaaagtctggatccgcccc 14607926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 6689316 - 6689160
Alignment:
Q  84 tatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtat 183  Q
    |||||||||| | ||||| |||||||||| | ||||||||| |||||| |||| |||||| ||||||||| ||||||| ||||||||| |||||||||||    
T  6689316 tatatagaaagagatgatcttttaacaattagcaatgatgtcattttagctcaatttcaataaatggataggagacgattttcattgtaatgtattgtat 6689217  T
Q  184 caaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttag 243  Q
    |||||  | |||||   | ||||||||||| |||||| ||||||||||||| ||||||||    
T  6689216 caaaccttgttatt---tttttttaatataatttgcattattgtttctttgtaattttag 6689160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 2919959 - 2920062
Alignment:
Q  163 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 262  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |||  ||||||||||| ||||||||||||| || |||||||    
T  2919959 tttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgcattat--tttctttgaaaatttagccccacatgtatcaaaagt 2920056  T
Q  263 ctggat 268  Q
    ||||||    
T  2920057 ctggat 2920062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 1975266 - 1975435
Alignment:
Q  103 ttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcat 201  Q
    |||||| ||| | ||||| | |||||||| |||||||||| ||||| || ||||||| | ||||||||| || |||||| ||||| |||| ||||||  |    
T  1975266 ttttaaaaattagcaatgctattattttaactcattttcatcaaatagacatgagacaattttcattgttattgtattgaatcaaccaatgttatttatt 1975365  T
Q  202 atttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccg 271  Q
    |||||||||||||||| || |||| ||||||| |||||||| || |||||||||| || |||| ||||||    
T  1975366 atttttaatatagtttacattattttttctttaaaattttaaccacacatataccgaatgtctagatccg 1975435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 30705438 - 30705248
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    ||||| ||||||||||  |||||||||| | ||||||| || | ||||| ||||  | |||| ||||| |||| ||| |||||||||  |||| ||||||    
T  30705438 aaaatcggtgatcagtggctaaatgaccatcttgtaacatacacagaaagatattttcttttcacaattaacattgaagttattttaaatcatgttcaac 30705339  T
Q  145 aaatggatatgagacgactttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattt 240  Q
    |||||||||  |||||| ||| ||     |||||||||||||||||| ||||||| |||||||| |||| |||| |  ||  ||||||||||||||    
T  30705338 aaatggataatagacgatttttat-----tgtattgtatcaaacaatgttatttcttatttttagtataatttgaatcataatttctttgaaattt 30705248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 21883399 - 21883261
Alignment:
Q  53 tgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggat 152  Q
    |||||||| ||||| ||||| | |||||||||||||||||| | ||  | | | |||||| | ||||| ||| |||||  ||||||||||||||||||||    
T  21883399 tgatcagtgactaattgaccctgttgtaacttatatagaaagagatattctataaacaattagcaatgctgtcattttttctcattttcaacaaatggat 21883300  T
Q  153 atgagacgactttcattgtgatgtattgtatcaaacaat 191  Q
    |  |||||| ||||||||| ||| ||||||| |||||||    
T  21883299 agaagacgattttcattgtaatgcattgtattaaacaat 21883261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 30702768 - 30702648
Alignment:
Q  123 gttattttacctcattttcaacaaatggatatgagacgactttcattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaa 221  Q
    ||||||||| ||||||||| |||| ||||||  |||||| ||| || || || ||||||||||||||||| ||||||| |||||||| |||| |||||      
T  30702768 gttattttagctcattttcgacaactggatagtagacgatttttatcgtcattgtattgtatcaaacaatgttatttcttatttttagtataatttgc-- 30702671  T
Q  222 tattgtttctttgaaattttagcc 245  Q
     || ||||||||||||||||||||    
T  30702670 -atcgtttctttgaaattttagcc 30702648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 33704205 - 33704118
Alignment:
Q  105 ttaacaataaacaatgatgttatttt-acctcattttcaacaaatggatatgagacgactttcattgtgatgtattgtatcaaacaat 191  Q
    |||||||| ||||||||||| ||||| | |||||||| ||||||| ||||  |||| | ||| ||||| |||||||||||||||||||    
T  33704205 ttaacaattaacaatgatgtcatttttagctcatttttaacaaatagatagaagacaatttttattgtaatgtattgtatcaaacaat 33704118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 18817062 - 18816936
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  18817062 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 18816963  T
Q  145 aaatggatatgagacgactttcattgt 171  Q
    ||||||||   |||||| |||||||||    
T  18816962 aaatggatgacagacgattttcattgt 18816936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 33704087 - 33704022
Alignment:
Q  211 atagtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgcccct 276  Q
    |||||||| | |||| ||| |||||||||||| ||||||||||||| ||| |||||||||| ||||    
T  33704087 atagtttgtattattatttatttgaaattttacccccacatatacctaaattctggatccgtccct 33704022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 35188102 - 35188058
Alignment:
Q  142 aacaaatggatatgagacgactttcattgtgatgtattgtatcaa 186  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||    
T  35188102 aacaaatggataagagacgattttcattgtaatgtattgtatcaa 35188058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 24901831 - 24901724
Alignment:
Q  45 aaaatgggtgatcagtaactaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaac 144  Q
    |||||||||||||| |   ||||||| ||  ||||||||| ||| |||| | ||| | |||| ||||| | || |||||||||| || ||||||||||||    
T  24901831 aaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaac 24901732  T
Q  145 aaatggat 152  Q
    ||||||||    
T  24901731 aaatggat 24901724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 8150815 - 8150879
Alignment:
Q  128 tttacctcattttcaacaaatggatatgagacgactttcattgtga-tgtattgtatcaaacaat 191  Q
    |||| |||||||||||||||||||||  |||||| ||| ||||| | ||||||| ||||||||||    
T  8150815 tttagctcattttcaacaaatggatagtagacgatttttattgtaattgtattgcatcaaacaat 8150879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 17848977 - 17849037
Alignment:
Q  214 gtttgcaatattgtttctttgaaattttagccccacatataccaaaagtctggatccgccc 274  Q
    ||||||| |||||||||||| |||||||| | |||||| ||||||| ||||| ||| ||||    
T  17848977 gtttgcattattgtttctttaaaattttaactccacatgtaccaaatgtctgaatctgccc 17849037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 64 - 272
Target Start/End: Original strand, 461302 - 461511
Alignment:
Q  64 taaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgact 163  Q
    |||| |||||| |||||||||||||| ||| ||||| | |||||||||| | ||||||||| |||||| |||||||||||||||| |||| ||||||| |    
T  461302 taaacgaccgttttgtaacttatatataaagatatgttattttaacaattagcaatgatgtcattttagctcattttcaacaaatagataggagacgatt 461401  T
Q  164 ttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaa-attttagccccacatataccaaaagt 262  Q
    |||||||| |||||||||| |||||||| ||| ||| |||||||||||||||||||| |||| ||||||| ||  ||||| ||||| |||||| ||| ||    
T  461402 ttcattgtaatgtattgtaccaaacaatgttacttcttatttttaatatagtttgcattattatttctttaaattttttaaccccatatatactaaatgt 461501  T
Q  263 ctggatccgc 272  Q
    || |||||||    
T  461502 ctagatccgc 461511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 277
Target Start/End: Original strand, 817 - 1027
Alignment:
Q  63 ctaaatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgac 162  Q
    |||||||||| | |||||||||||||||||| ||||| | |||| ||||| | ||||||||||| |||| ||||||||||||||  | |||  ||||||     
T  817 ctaaatgaccatcttgtaacttatatagaaagatatgttcttttgacaattagcaatgatgttagtttagctcattttcaacaatcgaatagtagacgat 916  T
Q  163 tttcattgtgatgtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaattttagccccacatataccaaaagt 262  Q
    |||||||||     |||||||   ||||| ||||||| |||||||| |||||||| |   ||||||||||||||||||||| | ||| |||| ||||  |    
T  917 tttcattgt----aattgtattgcacaatgttatttcttatttttagtatagttttcgtcattgtttctttgaaattttagtcacacgtatatcaaatat 1012  T
Q  263 ctggatccgcccctg 277  Q
    || |||||| |||||    
T  1013 ctagatccgtccctg 1027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 242
Target Start/End: Complemental strand, 9800 - 9625
Alignment:
Q  66 aatgaccgtattgtaacttatatagaaatatatgatgttttaacaataaacaatgatgttattttacctcattttcaacaaatggatatgagacgacttt 165  Q
    |||||| || ||||||||||||||| ||   ||| |  ||||||||| ||||||| ||||| |||| |||  |||||||||||  |||| |||| | |||    
T  9800 aatgactgtcttgtaacttatataggaagggatgttaatttaacaattaacaatgttgttactttaactc--tttcaacaaatcaatataagacaatttt 9703  T
Q  166 cattgtgat-gtattgtatcaaacaattttatttcatatttttaatatagtttgcaatattgtttctttgaaatttta 242  Q
     ||||| || | | || |||||||| | |||||| ||||||||||||| ||||||| |||| ||||||||||||||||    
T  9702 tattgtaattgcactgcatcaaacattgttattttatatttttaatattgtttgcattattttttctttgaaatttta 9625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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