View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_29 (Length: 387)
Name: NF4285_low_29
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 42822791 - 42823159
Alignment:
| Q |
10 |
agatgaaaattaaggtcttcaaattggcctcttcataacaaatttctacaaattaaaattggatctatttcttgtcactttcaaaagaagcagtgtaaaa |
109 |
Q |
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| T |
42822791 |
agattaaaattaaggtcttcaaattggcctcttcataacaaatttctacaaattaaaattggatctatttcttgtcactttcaaaagaagcagtgtaaaa |
42822890 |
T |
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| Q |
110 |
cactccaaagatgtaccataataaatagtaacgtaactaaaatctgctattcattgaatatgagaatatcttggacacccaaattaaatgcaatacaaaa |
209 |
Q |
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| T |
42822891 |
cactccaaagatgtaccataataaatactaacgtaactaaaatctgatattcattgaatatgagaatatcttggacacccaaattaaatgcaatacaaaa |
42822990 |
T |
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| Q |
210 |
tgaatggcccaaattagatagatattggtaaagaggacttatgccttatctgtg-ccccaacaaccaactcatagaaaaattgaccctaatagtacaaca |
308 |
Q |
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| T |
42822991 |
tgaatggcccaaattagatagatattggtaaagaggacttatgccttatctgtgcccccaacaaccaactcatagaaaaattgaccctaatagtacaaca |
42823090 |
T |
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| Q |
309 |
gcatttaatccactaataacaaactcatta------aatacaatatcattgatgatttgatttctttct |
371 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42823091 |
gcatttaatccactaataacaaactcattaaataacaatacaatatcattgatgatttgatttctttct |
42823159 |
T |
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