View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_low_32 (Length: 356)
Name: NF4285_low_32
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 48138819 - 48139149
Alignment:
| Q |
19 |
attgcaacttaatgcaacttaaaaaagaaaactagcactccctatcaaagcttttttaaatttcttcacaaaaggaattgatacacatgcataaacagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48138819 |
attgcaacttaatgcaacttaaaaaagaaaactagcactccctatcaaagcttttttaaatttcttcacaaaaggaattgatacacatgcataaacagtc |
48138918 |
T |
|
| Q |
119 |
tagcagtttcaaagagtcaaaaataattgagcacagtgaaattcaattatcactttaaattgaagaaaactgattaatttggcgttaatctgtttcgagc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48138919 |
tagcagtttcaaagagtcaaaaataattgagcacagtgaaattcaattatcactttaaattgaagaaaactgattaatttggcattaatctgtttcgagc |
48139018 |
T |
|
| Q |
219 |
aagctcttagctaggtaactgtccttgatcatgacatataatat---ataaaaaacacatggttaatgaacatttactaacaattcggaatgttgctgct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48139019 |
aagctcttagctaggtaactgtccttgatcatgacatataatataaaaaaaaaaacacatggttaatgaacatttacaaacaattcggaatgttgctgct |
48139118 |
T |
|
| Q |
316 |
ggttgcaacaattaaatcaaaggtttttcat |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48139119 |
ggttgcaacaattaaatcaaaggtttttcat |
48139149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University