View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_35 (Length: 343)
Name: NF4285_low_35
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 28 - 338
Target Start/End: Original strand, 32182405 - 32182715
Alignment:
| Q |
28 |
gttcatggatatatatcacgtctctatagaaatatccaccccatgaatttatccattctttagaccgaaaaattaaatttagaaagtgtgacaaaattta |
127 |
Q |
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| T |
32182405 |
gttcatggatatatatcacgtctctatagaaatatccaccccatgaatttatccattctttagaccgaaaaattaaatttagaaagtgtgacaaaattta |
32182504 |
T |
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| Q |
128 |
atttaaatcatactctttctttagcttgcttaccttatcgttctattctccttttgtggtgggatgttgtgagggtttgttttcataatgaattattaaa |
227 |
Q |
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| T |
32182505 |
atttaaataatactctttctttagcttgcttaccttatcgttctattctccttttgtggtgggatgttgtgagggtttgttttcataatgaattattaaa |
32182604 |
T |
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| Q |
228 |
ggccctttctatcatgagaatattgatacttgcttatcnnnnnnnnnnnnnnggttatgtgttatccttgtaacgcaaaagaaatttccccctgaataaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182605 |
ggccctttctatcatgagaatattgatacttgcttatcaaaaaacaaaaaaaggttatgtgttatccttgtaacgcaaaagaaatttccccctgaataaa |
32182704 |
T |
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| Q |
328 |
tatgatgatgt |
338 |
Q |
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||||||||||| |
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| T |
32182705 |
tatgatgatgt |
32182715 |
T |
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