View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_36 (Length: 341)
Name: NF4285_low_36
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 4283044 - 4283309
Alignment:
| Q |
18 |
ttaagtgctgtgaatctttgtgtttatttgttgatagccaaaggttttgtgtacaaaaagagacatgagggtgaaaagagtatgatggagggtagtacct |
117 |
Q |
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| T |
4283044 |
ttaagtgctctaaatctttgtgtttatttgttgatagccaaaggttttgtgtacaaaaagagacatgagggtgaaaagagtatgatggagggtagtacct |
4283143 |
T |
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| Q |
118 |
agaaaaaatgcttgatttttgtattaaaaactactaggtggtagtaccttgaattttaataaaacatattattgtcgaactcttattctttctcactctt |
217 |
Q |
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| T |
4283144 |
agaaaaaatgcttgatttttgtattaaaaactactaggtggtagtaccttgaattttaataaaacatattattgtcgaactcttattctttctcactctt |
4283243 |
T |
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| Q |
218 |
gattaaattcgatataatcttctcccaaagtgatctttctgatgatgctgaaataactacttcaca |
283 |
Q |
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| T |
4283244 |
gattaaattcgatataatcttctcccaaagtgatctttctgataatgctgaaataactacttcaca |
4283309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 4283307 - 4283340
Alignment:
| Q |
302 |
acaatatcttcatccatctcctcacctttgctac |
335 |
Q |
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| T |
4283307 |
acaatatcttcatccatctcctcacctttactac |
4283340 |
T |
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