View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_37 (Length: 339)
Name: NF4285_low_37
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 129 - 335
Target Start/End: Complemental strand, 11546289 - 11546083
Alignment:
| Q |
129 |
catttctgtattacgctcactttttctgagttttaatctttcctctacctagaaagttttaaaataaaatgagtcgaaggacaattgttattacaccaat |
228 |
Q |
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| T |
11546289 |
catttctgtattacgctcactttttctgagttttaatctttcctctacctagaaagttttaaaattaaatgagtcgaaggacaattgttattacaccaat |
11546190 |
T |
|
| Q |
229 |
tcacgttataagcaatctggtatgctagctagacaccagatcagattcaacaatactagtattcatttgaaatcttccatttccacgattacatcgaatg |
328 |
Q |
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| T |
11546189 |
tcacgttataagcaatctggtatgctagctagacaccagatcagattcaacaatacttgtattcatttgaaatcttccatttccacgattacatcgaatg |
11546090 |
T |
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| Q |
329 |
tagcctt |
335 |
Q |
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||||||| |
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| T |
11546089 |
tagcctt |
11546083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 11546503 - 11546397
Alignment:
| Q |
17 |
aggaaatagaacaacacaaagatagttcatagaattcatacttacacatcactaattccaaactctcatttttcaaatataaaacgagtcatgctatatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11546503 |
aggaaatagaacaacacaaagatagttcatagaattcatacttacgcatcactaattccaaactctcatttttcaaatataaaacgagtcatgctatatg |
11546404 |
T |
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| Q |
117 |
gcaggga |
123 |
Q |
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||||||| |
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| T |
11546403 |
gcaggga |
11546397 |
T |
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