View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_low_38 (Length: 326)

Name: NF4285_low_38
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_low_38
NF4285_low_38
[»] chr8 (11 HSPs)
chr8 (18-319)||(29212876-29213177)
chr8 (16-313)||(29637293-29637591)
chr8 (18-142)||(29254866-29254990)
chr8 (18-109)||(29227402-29227493)
chr8 (18-141)||(29246610-29246733)
chr8 (18-165)||(29235666-29235813)
chr8 (18-142)||(29385021-29385145)
chr8 (250-292)||(29235130-29235172)
chr8 (21-143)||(29280177-29280299)
chr8 (74-136)||(36692461-36692523)
chr8 (245-290)||(29280061-29280106)
[»] chr5 (2 HSPs)
chr5 (22-136)||(14496039-14496153)
chr5 (261-312)||(14496288-14496339)
[»] chr2 (3 HSPs)
chr2 (67-142)||(30917027-30917102)
chr2 (18-145)||(30927403-30927530)
chr2 (67-145)||(30908121-30908199)
[»] chr4 (1 HSPs)
chr4 (72-132)||(43728668-43728728)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 29212876 - 29213177
Alignment:
Q  18 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttcctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29212876 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagccagagcaaagtaaattgtagcatccagttcctt 29212975  T
Q  118 gatatgcatcagtctgcaattattactagccattatcatttttcttttcaacacannnnnnnattaataggtatcttacacttgaagcaagtagtatcaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||    
T  29212976 gatatgcatcagtctgcaattattactagccattatcatttttcttttcaacacatttttttattaatgggtatcttacacttgaagcaagtagtatcaa 29213075  T
Q  218 tcatatatagtttacttttccacctcctttacttcaatcaatttacttaccgtccaataagtaaagaatctagggtagctatccccatagagctctgtgc 317  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29213076 tcatagatattttacttttccacctcctttacttcaatcaatttacttaccgtccaataagtaaagaatctagggtagctatccccatagagctctgggc 29213175  T
Q  318 tg 319  Q
    ||    
T  29213176 tg 29213177  T

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Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 29637591 - 29637293
Alignment:
Q  16 caccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||| |||||||||| ||||| ||    
T  29637591 caccattatatgtagaagttggagaaattgctgctccaattgcaattttattggtagtttgaacaaagtctgagcaaagtgaattgtagcacccagtacc 29637492  T
Q  116 ttgatatgcatcagtctgcaattattactagccattatcatttttcttttcaacacannnnnnnattaataggtatcttacacttgaagcaagtagtatc 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||| |||||||||||||||||||||||||||||    
T  29637491 ttcatatgcatcagtctgcaattattactagccattatcatttttcttttcaatacatttttttattaatgggtatcttacacttgaagcaagtagtatc 29637392  T
Q  216 aatcatatatagtttacttttccacctcctttacttcaatcaatttacttaccgtccaataagtaaagaatctagggtag--ctatccccatagagctct 313  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| || |  |||| |||||||||||||    
T  29637391 aatcatagatagtttacttttccacctccttt-cttcaatcaatttacttactgtccaattagtaaagaatctagagttgctctattcccatagagctct 29637293  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 29254990 - 29254866
Alignment:
Q  18 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttcctt 117  Q
    |||||||||||||||||||||||||||||   |||||||||||| ||  || |||||||||||||||||| ||| ||||||| |||||||||||||   |    
T  29254990 ccattatatgtagaagttggagaaattgcacttccaattgcaatttttttgttagtttgaacaaagcctgggcatagtaaatcgtagcatccagtttgat 29254891  T
Q  118 gatatgcatcagtctgcaattatta 142  Q
     |||| |||||| ||| ||||||||    
T  29254890 tatatccatcagcctgaaattatta 29254866  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 29227493 - 29227402
Alignment:
Q  18 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatcc 109  Q
    ||||||||||||||| |||||||||| || ||||||| |||||| ||| | ||||||||||||||||||| ||| | |||||||||||||||    
T  29227493 ccattatatgtagaaattggagaaatcgcagctccaagtgcaattttattactagtttgaacaaagcctgggcataataaattgtagcatcc 29227402  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 29246733 - 29246610
Alignment:
Q  18 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttcctt 117  Q
    ||||||||||||||| ||||||||||||  | |||||||||||  ||| || |||||||||||||||||| ||| ||||||| ||||||||| |||   |    
T  29246733 ccattatatgtagaaattggagaaattggagttccaattgcaaatttattgttagtttgaacaaagcctgggcatagtaaatcgtagcatccggtttggt 29246634  T
Q  118 gatatgcatcagtctgcaattatt 141  Q
     |||| |||||| |||||||||||    
T  29246633 catatccatcagcctgcaattatt 29246610  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 29235813 - 29235666
Alignment:
Q  18 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttcctt 117  Q
    |||||||||||||||||||||| |||||   |||||||| ||| |||  || ||||||||||||| ||||  || |||||||||||||| |||||   ||    
T  29235813 ccattatatgtagaagttggagtaattgtacctccaattacaacatttttgttagtttgaacaaaccctggacatagtaaattgtagcacccagtatttt 29235714  T
Q  118 gatatgcatcagtctgcaattattactagccattatcatttttctttt 165  Q
     |||| |||||| ||||||||| |  ||  ||| ||||||||||||||    
T  29235713 tatatccatcagcctgcaattaattataatcataatcatttttctttt 29235666  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 29385145 - 29385021
Alignment:
Q  18 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttcctt 117  Q
    |||||||||||||||||||||| || ||   |||||||| ||| |||  || ||||||||||||| |||  |||   || ||||||||| || ||   ||    
T  29385145 ccattatatgtagaagttggagtaagtgtaactccaattacaacatttttgttagtttgaacaaaccctaggcatcttacattgtagcaccctgtatttt 29385046  T
Q  118 gatatgcatcagtctgcaattatta 142  Q
    |||||||||||| ||||||||||||    
T  29385045 gatatgcatcagcctgcaattatta 29385021  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 29235172 - 29235130
Alignment:
Q  250 ttcaatcaatttacttaccgtccaataagtaaagaatctaggg 292  Q
    |||||||||||||||||||||||| ||| |||| |||||||||    
T  29235172 ttcaatcaatttacttaccgtccagtaaataaacaatctaggg 29235130  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 29280299 - 29280177
Alignment:
Q  21 ttatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttccttgat 120  Q
    ||||||||||||||||||| || ||    ||||| | |||| ||  |||||||||| ||||||||||  || ||||| || | ||||||||||  || ||    
T  29280299 ttatatgtagaagttggagcaagtgtacttccaagtacaatctttttgctagtttggacaaagcctggacatagtaagttatggcatccagtttttttat 29280200  T
Q  121 atgcatcagtctgcaattattac 143  Q
    || |||||| |||||||||||||    
T  29280199 atccatcagcctgcaattattac 29280177  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 36692523 - 36692461
Alignment:
Q  74 ttgaacaaagcctgagcaaagtaaattgtagcatccagttccttgatatgcatcagtctgcaa 136  Q
    ||||| ||| ||||||||||| | ||||||||| |||||  |||||||||||||| |||||||    
T  36692523 ttgaataaatcctgagcaaagaagattgtagcaaccagtagcttgatatgcatcactctgcaa 36692461  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 29280106 - 29280061
Alignment:
Q  245 tttacttcaatcaatttacttaccgtccaataagtaaagaatctag 290  Q
    ||||||||||||||||||| ||||||||  |||||||| |||||||    
T  29280106 tttacttcaatcaatttacataccgtccggtaagtaaacaatctag 29280061  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 14496039 - 14496153
Alignment:
Q  22 tatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttccttgata 121  Q
    |||||| |||||||||||| ||||| || ||||||||||| ||| || |||||||||||||||| || || | ||||||||||||||||||| |||||||    
T  14496039 tatatgaagaagttggagagattgcagcaccaattgcaattttattgttagtttgaacaaagccagaacacaataaattgtagcatccagttgcttgata 14496138  T
Q  122 tgcatcagtctgcaa 136  Q
    ||||||| |||||||    
T  14496139 tgcatcactctgcaa 14496153  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 14496288 - 14496339
Alignment:
Q  261 tacttaccgtccaataagtaaagaatctagggtagctatccccatagagctc 312  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  14496288 tacttaccgtccaataagtaaagaatctagggtaactgtccccatagagctc 14496339  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 30917027 - 30917102
Alignment:
Q  67 tgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttccttgatatgcatcagtctgcaattatta 142  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||| ||| ||||||||||| ||||||||||||    
T  30917027 tgctagtttgaacaaagcctgagcagcgtaaattatagcatccagtttctttatatgcatcagcctgcaattatta 30917102  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 30927403 - 30927530
Alignment:
Q  18 ccattatatgtagaagttggagaaattgctgctccaattgcaatattactgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttcctt 117  Q
    |||||||| ||||||| |||||| | |||  |||||| |||||   |  |||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  30927403 ccattatacgtagaaggtggagagagtgcacctccaagtgcaaatgttttgctagtttgaacaaagcctggacaacgtaaattgtagcatccagttcctt 30927502  T
Q  118 gatatgcatcagtctgcaattattacta 145  Q
     |||| |||  | ||||||||| |||||    
T  30927503 tatatccattggcctgcaattactacta 30927530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 30908121 - 30908199
Alignment:
Q  67 tgctagtttgaacaaagcctgagcaaagtaaattgtagcatccagttccttgatatgcatcagtctgcaattattacta 145  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||  || |||  |||||| ||||||||| |||||    
T  30908121 tgctagtttgaacaaagcctggacaacgtaaattgtagcatccagtttgtttataatcatcagcctgcaattactacta 30908199  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 43728668 - 43728728
Alignment:
Q  72 gtttgaacaaagcctgagcaaagtaaattgtagcatccagttccttgatatgcatcagtct 132  Q
    ||||||| ||| || || || ||||||||||| ||||||||| ||||||||||||| ||||    
T  43728668 gtttgaataaatccagaacatagtaaattgtaacatccagttgcttgatatgcatccgtct 43728728  T

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