View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_39 (Length: 324)
Name: NF4285_low_39
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 148 - 308
Target Start/End: Complemental strand, 39734377 - 39734217
Alignment:
| Q |
148 |
atccacatacggttgtgatgggaacagaaacacacattcaaactgaattaacggtgtctgatgaacgtttagtgggtagtgcagtcatgttcccttcaca |
247 |
Q |
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| T |
39734377 |
atccacatacggttgtgatgggaacagaaacacacattcaaagtaaattaacggtgtctgatgaacgtttagtgggtagtgcagtcatgttcccttcaca |
39734278 |
T |
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| Q |
248 |
cactaacaatattattaatcctttgagtgtgagtgcccatgatgtcatacatagtacacct |
308 |
Q |
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| T |
39734277 |
cactaacaatattattaatcctttgagtgcgagtgcccatgatgtcatacatagtacacct |
39734217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 39734548 - 39734405
Alignment:
| Q |
7 |
tgagaagaacaagaagcatgagtggtggtttatccgtggacatgcaagcacctgatcaaaccaacaacttagaatcccatcatgaagaacaatcagtgat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
39734548 |
tgagaagaacaagaagcatgagtggtggtttatccgtggacatgcaagcacatgatcaaaccaacaacttagaatcccatcatgaaaaagaatcagtgat |
39734449 |
T |
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| Q |
107 |
gtctcatcagaatcctctgcagccacatccacaccatgatgatc |
150 |
Q |
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| T |
39734448 |
gtctcatcataatcctctgcagccacatccacaccatgatgatc |
39734405 |
T |
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