View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_40 (Length: 323)
Name: NF4285_low_40
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 39045500 - 39045803
Alignment:
| Q |
18 |
tttttacattgcaattcggtcacgttttccacggaga----gaaatttgnnnnnnnnatcactgtcataagttcaactaaaaggatctaaataaaaagta |
113 |
Q |
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| T |
39045500 |
tttttacattgcaattcggtcacgttttccacggagattgagaaatttgttttttt-atcactgtcataagttcaactaaaaggatctaaataaaa-gta |
39045597 |
T |
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| Q |
114 |
catcggtgtttttgaagaagaaaaaatacattg-tgttaacctagtttttataagaatggatcattgataatctaaaattcgataaagtacggtgaatga |
212 |
Q |
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| T |
39045598 |
catcggtgtttttgaagaagaaaaaatacattggtgttaacctagtttttataagaatggatcattgataatctaaaattcgataaagtacggtgaatga |
39045697 |
T |
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| Q |
213 |
ttgtttcaataaggattatttaaattctcacgaataatttgtctttaattaaagttcattaaccatttaatctcattcccttactttttccttgactata |
312 |
Q |
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| T |
39045698 |
ttgtttcaataaggattatttaaattctcacgaataatttgtctttaattaaagttcattaaccatttaatctcattcccttactttttccttgactgta |
39045797 |
T |
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| Q |
313 |
tctgtg |
318 |
Q |
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| |||| |
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| T |
39045798 |
tatgtg |
39045803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 27528633 - 27528596
Alignment:
| Q |
245 |
aataatttgtctttaattaaagttcattaaccatttaa |
282 |
Q |
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| T |
27528633 |
aataatttgtatttaattgaagttcattaaccatttaa |
27528596 |
T |
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