View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_low_47 (Length: 297)

Name: NF4285_low_47
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_low_47
NF4285_low_47
[»] chr1 (8 HSPs)
chr1 (1-279)||(26580669-26580947)
chr1 (4-154)||(33713441-33713591)
chr1 (1-65)||(8986882-8986946)
chr1 (1-65)||(25264759-25264823)
chr1 (13-146)||(14240012-14240145)
chr1 (15-90)||(7220997-7221074)
chr1 (4-70)||(10063767-10063832)
chr1 (1-65)||(27910147-27910211)
[»] chr7 (14 HSPs)
chr7 (4-158)||(9612660-9612814)
chr7 (4-158)||(9840231-9840385)
chr7 (16-157)||(2454527-2454668)
chr7 (1-156)||(9891005-9891161)
chr7 (15-116)||(10991729-10991830)
chr7 (4-90)||(24751994-24752080)
chr7 (1-77)||(23007872-23007948)
chr7 (31-158)||(4901154-4901282)
chr7 (4-90)||(21884372-21884463)
chr7 (15-91)||(10938504-10938582)
chr7 (1-65)||(6170171-6170235)
chr7 (1-63)||(2505104-2505166)
chr7 (104-154)||(20175354-20175404)
chr7 (104-157)||(2504951-2505004)
[»] scaffold0085 (1 HSPs)
scaffold0085 (4-155)||(23196-23347)
[»] chr4 (7 HSPs)
chr4 (20-157)||(19547839-19547976)
chr4 (4-157)||(20316934-20317088)
chr4 (5-129)||(22217765-22217890)
chr4 (2-95)||(23975060-23975158)
chr4 (28-90)||(19901395-19901459)
chr4 (15-55)||(15049313-15049353)
chr4 (15-55)||(15105071-15105111)
[»] chr3 (6 HSPs)
chr3 (4-157)||(26092072-26092226)
chr3 (15-154)||(21019130-21019272)
chr3 (15-149)||(23055369-23055505)
chr3 (8-76)||(18473766-18473833)
chr3 (1-65)||(20339040-20339104)
chr3 (109-157)||(11533275-11533323)
[»] chr6 (5 HSPs)
chr6 (4-160)||(9386829-9386986)
chr6 (4-151)||(16166982-16167129)
chr6 (15-95)||(10504413-10504495)
chr6 (15-147)||(32759223-32759354)
chr6 (15-95)||(3357395-3357477)
[»] chr2 (9 HSPs)
chr2 (1-157)||(18922889-18923045)
chr2 (4-142)||(34368543-34368680)
chr2 (4-88)||(27870530-27870613)
chr2 (4-156)||(18932996-18933148)
chr2 (4-99)||(30682970-30683063)
chr2 (2-95)||(8502247-8502345)
chr2 (1-65)||(25937861-25937925)
chr2 (1-44)||(8446283-8446327)
chr2 (1-37)||(12556901-12556937)
[»] chr8 (6 HSPs)
chr8 (1-157)||(26008832-26008989)
chr8 (32-114)||(24115032-24115116)
chr8 (1-69)||(18829423-18829491)
chr8 (13-67)||(24080388-24080442)
chr8 (105-158)||(45264870-45264923)
chr8 (15-63)||(45264780-45264828)
[»] chr5 (11 HSPs)
chr5 (2-156)||(25934218-25934373)
chr5 (1-158)||(28279218-28279376)
chr5 (5-154)||(17830869-17831021)
chr5 (1-156)||(20533255-20533413)
chr5 (7-64)||(13692872-13692929)
chr5 (15-147)||(111811-111945)
chr5 (13-157)||(22920131-22920277)
chr5 (15-147)||(26308371-26308505)
chr5 (5-69)||(32582833-32582897)
chr5 (2-65)||(25921993-25922057)
chr5 (119-160)||(15544789-15544830)
[»] scaffold0086 (1 HSPs)
scaffold0086 (1-67)||(13617-13683)
[»] scaffold0394 (1 HSPs)
scaffold0394 (13-154)||(10859-11002)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 26580947 - 26580669
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26580947 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctgaagcgaatc 26580848  T
Q  101 actctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacctaatgttagattcctgacatccaacatatcacctagagggttc 200  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26580847 actctgagataacggtgcttagaaaggagacatacctaatattggtgcaaacgtacctaatgttagattcctgacatccaacatatcacctagagggttc 26580748  T
Q  201 ttcttgaggttaacattcttaacccagatgatcatagttattgaagagtgatgtctcacaaaagagtgaatgcctcgag 279  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  26580747 ttcttgaggttaacattcttaacccagatgatcttagttattgaggagtgatttctcacaaaagagtgaatgcctcgag 26580669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 33713591 - 33713441
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||| |||     
T  33713591 tttgttggaatatttaatttaagttctttattcagttatttttcgaatcctatttaattttactatttcgtaagatttgtctcttctgaagcgaaccacc 33713492  T
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 154  Q
    || | |||   || ||||| || || | |||||||||||||||| ||||||    
T  33713491 ctaaaatacaagtacttaggaaagtaacatacctaatattggtgtaaacct 33713441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8986946 - 8986882
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 65  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  8986946 ttatttgttggattatttaatttaagttctttatttagttattttatgaatcctatttaatttta 8986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25264823 - 25264759
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 65  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||  ||||| ||||||||||||    
T  25264823 ttatttgttggattatttaatttaagttctttatttagttattttatgaatcttatttaatttta 25264759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 14240012 - 14240145
Alignment:
Q  13 taatttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaatcactctgagat 110  Q
    |||||| ||||||  | ||||||||||||||||| |||||  ||||||||||||| |  || ||||||| |||||||||| ||  | || || |||||||    
T  14240012 taattttatttaatgtatttattcagttattttttgaatcagatttaattttactgtcgtgcgtaagatctgtctcctctcaa--gtataaccctgagat 14240109  T
Q  111 aacggtgcttagaaaggtgaaatacctaatattggt 146  Q
    |||||| ||||| ||||||  |||||||||||||||    
T  14240110 aacggtacttaggaaggtggcatacctaatattggt 14240145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 7221074 - 7220997
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctct 90  Q
    |||||||||||  |||||||  |||||||||| |||||||||||||||||||| |  || | ||||||||||||||||    
T  7221074 atttaatttaaagtctttatctagttattttttgaatcctatttaattttactttcgtgcgcaagatttgtctcctct 7220997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 10063767 - 10063832
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactatt 70  Q
    ||||||||||| ||||||||||  | |||||||| |||||||  |||||||||||||||||||||||    
T  10063767 tttgttggatattttaatttaaagt-tttattcatttattttgggaatcctatttaattttactatt 10063832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27910211 - 27910147
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 65  Q
    ||||||||||||| |||||||||   || |||||| | |||||||  ||||||||||||||||||    
T  27910211 ttatttgttggattatttaattttcattttttatttatttattttatgaatcctatttaatttta 27910147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 9612660 - 9612814
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||     
T  9612660 tttgttggattatttaaattaagttctttattcagttatttttcgaatcctatttaattttactattgcgtaagatttgtctcctctgaagcgaaccacc 9612759  T
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 158  Q
    ||||||||   || ||||| ||||||| | |||||||||||||||||||||||||    
T  9612760 ctgagatacatgtacttaggaaggtgacaaacctaatattggtgcaaacctacct 9612814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 9840231 - 9840385
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||     
T  9840231 tttgttggattatttaaattaagttctttattcagttatttttcgaatcctatttaattttactattgcgtaagatttgtctcctctgaagcgaaccacc 9840330  T
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 158  Q
    ||||||||   || ||||| ||||||| | |||||||||||||||||||||||||    
T  9840331 ctgagatacatgtacttaggaaggtgacaaacctaatattggtgcaaacctacct 9840385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 2454668 - 2454527
Alignment:
Q  16 tttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacgg 115  Q
    |||| ||||||||||| |||   |||||||  |||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||  |    
T  2454668 tttagtttaagttcttcattattttattttatgaatcctatttaattttactatagcgtaatatttgtctcctctgaagcgaatcaccctgagataatag 2454569  T
Q  116 tgcttagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
    | ||||| ||||||| || ||||||||||||| |||||||||    
T  2454568 tacttaggaaggtgacattcctaatattggtgtaaacctacc 2454527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9891161 - 9891005
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaa-t 99  Q
    ||||||||||||| |||| |||||||||||||||||| |||||||  ||||||||||| |||||| |||||||||| |||||| || |||||||| || |    
T  9891161 ttatttgttggattatttcatttaagttctttattcaattattttatgaatcctatttcattttattattgtgtaaaatttgtttcttctaaagcaaact 9891062  T
Q  100 cactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 156  Q
      | ||||||||||||| |||||    |||| |||||||||||||||| ||||||||    
T  9891061 gtccctgagataacggtacttagggtagtgacatacctaatattggtgaaaacctac 9891005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 10991729 - 10991830
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacg 114  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| | ||| ||| ||| || ||||||||    
T  10991729 atttaatatatgttctttattcagttattttttgaatcctatttaattttactattgcgtaatatttgtctcctgtgaagtgaaccaccctaagataacg 10991828  T
Q  115 gt 116  Q
    ||    
T  10991829 gt 10991830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 24751994 - 24752080
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctct 90  Q
    |||||||||| | || ||||||||| ||||||||| ||| ||||||||||||||||||||||||| |  ||||||||||||||||||    
T  24751994 tttgttggattaatttatttaagttttttattcagatatatttcgaatcctatttaattttactagtacgtaagatttgtctcctct 24752080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23007948 - 23007872
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaag 77  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||   |||| | ||||||||||||||||||||||    
T  23007948 ttatttgttggattatttaatttaagttctttattcaattattttgttaatcttgtttaattttactattgtgtaag 23007872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 4901154 - 4901282
Alignment:
Q  31 ttattcagttatttttcgaatcctatttaattt-tactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacggtgcttagaaaggtg 129  Q
    ||||||||||||||||  ||||||||||||||| |  |  || |||||||||||||||| | ||| ||| ||| ||||||||| |||  |||| ||||||    
T  4901154 ttattcagttatttttttaatcctatttaatttattgtcatgcgtaagatttgtctcctttgaagtgaaccaccctgagataatggtatttaggaaggtg 4901253  T
Q  130 aaatacctaatattggtgcaaacctacct 158  Q
    | || ||||||||||||||| ||| ||||    
T  4901254 acattcctaatattggtgcataccaacct 4901282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 21884372 - 21884463
Alignment:
Q  4 tttgttggataattta----atttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctct 90  Q
    ||||||||||||||||    ||||||  |||||||||| ||||||||||||| |||||||||||||||||  || ||||||||||||||||||    
T  21884372 tttgttggataatttattaaatttaaagtctttattca-ttatttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctct 21884463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 10938582 - 10938504
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctcta 91  Q
    |||||||||||  | ||||||||||||||| ||||||  |||||||||||||| |  ||||||||||||||||||||||    
T  10938582 atttaatttaaagtttttattcagttatttctcgaatgttatttaattttactgtggtgtgtaagatttgtctcctcta 10938504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6170235 - 6170171
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 65  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||  ||||||||| | ||||||    
T  6170235 ttatttgttagattatttaatttaagttctttatttagttattttatgaatcctatattatttta 6170171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2505166 - 2505104
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattt 63  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||  ||||| ||||| ||||    
T  2505166 ttatttgttggattatttaatttaagttctttattaagatattttatgaatcgtatttgattt 2505104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 20175404 - 20175354
Alignment:
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 154  Q
    |||||||||| || ||||| ||||||| |||||||||||||||||| ||||    
T  20175404 ctgagataacagtacttaggaaggtgacatacctaatattggtgcatacct 20175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 2505004 - 2504951
Alignment:
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
    ||||||||||||| |||||  | |||| |||||||||||||||| |||||||||    
T  2505004 ctgagataacggtacttagggaagtgacatacctaatattggtgaaaacctacc 2504951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 23347 - 23196
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    |||||||||| |||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||  ||||||||||||||| | |||||||  |||    
T  23347 tttgttggattatttgatttaagttctttatttatttatttttcaaatcctatttaattttactattgcataagatttgtctcctttgaagcgaaaaact 23248  T
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaaccta 155  Q
     |||||||||||| ||||| ||||||| |||||||||||||||| |||||||    
T  23247 gtgagataacggtacttaggaaggtgacatacctaatattggtgaaaaccta 23196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 19547839 - 19547976
Alignment:
Q  20 atttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacggtgct 119  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||| ||| ||| ||    
T  19547839 atttaagttctttattcaattattttttgaatcctatttaattttactattgcgtaagctttgtctcctctaaagagaatcaccctgaggtaagggtact 19547938  T
Q  120 tagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
    ||| ||||| | ||||||| |||||||| |||||||||    
T  19547939 taggaaggtaacatacctattattggtgaaaacctacc 19547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 20316934 - 20317088
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaaga-tttgtctcctctaaagcgaatcac 102  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| | |||||| ||||| || ||||||| ||| |||    
T  20316934 tttgttggattatttaatttaagttctttattcagttattttgtgaatcctatttaattttactatagcgtaagattttgtttcttctaaagtgaaccac 20317033  T
Q  103 tctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
     |||||||||| || ||| | ||||||| ||| |||||||| ||| |||||||||    
T  20317034 cctgagataacagtacttgggaaggtgacatagctaatattagtgaaaacctacc 20317088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 22217765 - 22217890
Alignment:
Q  5 ttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaaga-tttgtctcctctaaagcgaatcact 103  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||| |  | | ||||||| |||     
T  22217765 ttgttggattatttaatttaagttctttattcagttattttctgaatcctatttaattttactattgcgtaagactttgttttttatgaagcgaaccacc 22217864  T
Q  104 ctgagataacggtgcttagaaaggtg 129  Q
    ||||||||||||| ||||| ||||||    
T  22217865 ctgagataacggtacttaggaaggtg 22217890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 23975158 - 23975060
Alignment:
Q  2 tatttgttggata---atttaatttaagttctttattcagttatttttcgaatcctatttaattttac--tattgtgtaagatttgtctcctctaaagc 95  Q
    |||||||||||||   |||||||||||  |||||||| |||||||| |||| | ||||||||||||||  || ||||| | ||||||||||||||||||    
T  23975158 tatttgttggatatttatttaatttaaagtctttatttagttatttctcgattgctatttaattttactgtagtgtgttatatttgtctcctctaaagc 23975060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 19901459 - 19901395
Alignment:
Q  28 tctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctct 90  Q
    |||||||||| ||||||||| ||||||||||||||||||| |  ||| |||||||||||| ||||    
T  19901459 tctttattcatttatttttctaatcctatttaattttactgtcgtgtataagatttgtcttctct 19901395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 15049313 - 15049353
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatccta 55  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
T  15049313 atttaatttaaattctttattcagttattttgtgaatccta 15049353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 15105111 - 15105071
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatccta 55  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
T  15105111 atttaatttaaattctttattcagttattttgtgaatccta 15105071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 26092226 - 26092072
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||| ||||||||||||| ||| |||  ||     
T  26092226 tttgttggattatttaatttaagttctttattcagttattttatgaatcctatttaattttactattgcataacatttgtctcctctgaagtgaactacg 26092127  T
Q  104 ctgagataacggtgcttagaaaggtga-aatacctaatattggtgcaaacctacc 157  Q
    |||| |||||||| ||||| ||||||| | || |||||||||||| |||||||||    
T  26092126 ctgaaataacggtacttaggaaggtgacattatctaatattggtgtaaacctacc 26092072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 21019130 - 21019272
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaa-tcactctgagata 111  Q
    |||||||||||  |||||||||| ||||||||  ||||||||||||||||||| |  || ||||||||||||  ||||||||||||  ||| ||||||||    
T  21019130 atttaatttaaagtctttattcatttatttttttaatcctatttaattttactttcgtgcgtaagatttgtccactctaaagcgaacccaccctgagata 21019229  T
Q  112 acggtgcttagaaaggtgaaatacctaatattggtgcaaacct 154  Q
    ||    ||||| ||||||| | |||||||||||||||||||||    
T  21019230 acaacacttaggaaggtgacacacctaatattggtgcaaacct 21019272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 23055369 - 23055505
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgt--gtaagatttgtctcctctaaagcgaatcactctgagataa 112  Q
    ||||||||||| || |||||||| |||||||||||||  |||||||||||||| | ||   ||||||||||||||| | |||| || |||  ||| ||||    
T  23055369 atttaatttaaattttttattcatttatttttcgaatattatttaattttactgtcgtacataagatttgtctcctttgaagcaaaccaccttgaaataa 23055468  T
Q  113 cggtgcttagaaaggtgaaatacctaatattggtgca 149  Q
    || | || |||||||||| ||||||||||||||||||    
T  23055469 cgctactaagaaaggtgacatacctaatattggtgca 23055505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 18473766 - 18473833
Alignment:
Q  8 ttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaa 76  Q
    ||||||| |||||||||||| ||||||||| ||||||||  ||| ||||||||||||||||||| ||||    
T  18473766 ttggatattttaatttaagt-ctttattcaattatttttgaaattctatttaattttactattgcgtaa 18473833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 20339040 - 20339104
Alignment:
Q  1 ttatttgttggata-atttaatttaagttctttattcagttatttttcgaatcctatttaatttta 65  Q
    |||||||||||||  ||||| ||||||| ||||||||| |||||||  ||||||||||||||||||    
T  20339040 ttatttgttggatttatttattttaagt-ctttattcaattattttatgaatcctatttaatttta 20339104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 11533323 - 11533275
Alignment:
Q  109 ataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
    |||||||| ||||| ||||||| | |||||||||||||| |||||||||    
T  11533323 ataacggtacttaggaaggtgacaaacctaatattggtgaaaacctacc 11533275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 9386986 - 9386829
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgt-aagatttgtctcctctaaagcgaatcac 102  Q
    |||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| || ||||||| |||||||| ||||||| | |    
T  9386986 tttgttggattatttaatttaagttctttatttagttattatttgaatcctatttaattttactattgcgtaaagatttatctcctctgaagcgaaccgc 9386887  T
Q  103 tctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacctaa 160  Q
      |||||||||| | ||||  ||||| | ||||||||| |||||||||||| ||||||    
T  9386886 cttgagataacgatacttaagaaggttacatacctaattttggtgcaaacccacctaa 9386829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 16167129 - 16166982
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    ||||||| || ||||||||||||||  ||||||| |||||||| ||||||||||||||||||||| ||  ||||||||||| |||||||||| || |||     
T  16167129 tttgttgaattatttaatttaagttgcttattcaattattttttgaatcctatttaattttactagtgcataagatttgtcacctctaaagcaaaccacc 16167030  T
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaa 151  Q
    || ||||||| || ||||| || |||| ||||| ||||||||||||||    
T  16167029 ctaagataacagtacttaggaatgtgacatacccaatattggtgcaaa 16166982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 10504495 - 10504413
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagc 95  Q
    |||||||||||  ||||||||||||| |||||| ||||| |||||||||||||||  || |||||||||||||||||| ||||    
T  10504495 atttaatttaaagtctttattcagttgtttttctaatccaatttaattttactatcgtgcgtaagatttgtctcctctgaagc 10504413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 32759354 - 32759223
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgt--gtaagatttgtctcctctaaagcgaatcactctgagataa 112  Q
    |||||||||||  |||||||| |||||||||| ||||||||||| |||||||||||||  ||| || ||||||| ||| ||||  || || ||||||||     
T  32759354 atttaatttaaagtctttatttagttattttttgaatcctatttgattttactattgtgcgtatga-ttgtctcatctgaagc--ataaccctgagatat 32759258  T
Q  113 cggtgcttagaaaggtgaaatacctaatattggtg 147  Q
     ||| |||||  |||||| ||||||||||||||||    
T  32759257 aggtacttagggaggtgacatacctaatattggtg 32759223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 3357477 - 3357395
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgt--gtaagatttgtctcctctaaagc 95  Q
    |||||||||||  |||||||||| |||||||    || ||||||||||||||||||||  ||||||| |||||||||| ||||    
T  3357477 atttaatttaaagtctttattcacttattttgattatgctatttaattttactattgtgggtaagatctgtctcctctgaagc 3357395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 18923045 - 18922889
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatc 100  Q
    |||||||||  || |||||||||||||| ||||||||||||||||  |||||||||||||||||||||    ||| ||||||||| |||| |||| || |    
T  18923045 ttatttgttaaattatttaatttaagttttttattcagttattttatgaatcctatttaattttactacaacgtaggatttgtcttctctgaagcaaagc 18922946  T
Q  101 actctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
    || ||| |||||| || ||||| ||||||  ||||||||||||||||||||||||||    
T  18922945 accctgcgataacagtacttaggaaggtggcatacctaatattggtgcaaacctacc 18922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 34368680 - 34368543
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    |||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| | ||||| |||     
T  34368680 tttgctggattatttaatttaaattctttattcagttatttt-cgaatcctatttaattttactattgcgtaagatttgtcttctctgacgcgaaccacc 34368582  T
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatat 142  Q
     | |||||| ||| ||||| || |||| |||||||||||    
T  34368581 ttaagataaaggtacttaggaaagtgacatacctaatat 34368543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 27870613 - 27870530
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcct 88  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  27870613 tttgttggatgatttaatttaagt-ctttattcagttatttctcgaatcctatttaattttactattgcataagatttgtctcct 27870530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 18933148 - 18932996
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 103  Q
    ||||||||||  |||||||||||||||||| | || ||||||  ||||||||||||| |||| ||| | |||||||||||||||||  ||| ||| |||     
T  18933148 tttgttggattgtttaatttaagttctttactaagatattttatgaatcctatttaactttattatagcgtaagatttgtctcctcagaagtgaaccacc 18933049  T
Q  104 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 156  Q
    ||||||||||  | ||||| ||||||| |||  ||||||||||| ||| ||||    
T  18933048 ctgagataacaatacttaggaaggtgacatatataatattggtgaaaatctac 18932996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 30682970 - 30683063
Alignment:
Q  4 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaat 99  Q
    |||||||||| |||||||| || |||||||||||||| |||||  ||||||||| |||||| |||||  ||||||||||||||||||  |||||||    
T  30682970 tttgttggattatttaattcaaattctttattcagtttttttt--aatcctattgaattttcctattacgtaagatttgtctcctctggagcgaat 30683063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 8502247 - 8502345
Alignment:
Q  2 tatttgttggata---atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagc 95  Q
    |||||||||||||   |||||||||||  ||||||||||||||||| | ||||  ||||||||||||||||  || |||||||||||||||||| ||||    
T  8502247 tatttgttggatatttatttaatttaaagtctttattcagttatttcttgaattttatttaattttactatagtgcgtaagatttgtctcctctgaagc 8502345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25937925 - 25937861
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 65  Q
    ||||||||||||| ||||||||||||||||||||| || || |||  ||||||||||||||||||    
T  25937925 ttatttgttggattatttaatttaagttctttatttagatactttatgaatcctatttaatttta 25937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8446283 - 8446327
Alignment:
Q  1 ttatttgttggata-atttaatttaagttctttattcagttattt 44  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  8446283 ttatttgttggatctatttaatttaagttctttattcagttattt 8446327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12556901 - 12556937
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattca 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12556901 ttatttgttggattatttaatttaagttctttattca 12556937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 26008989 - 26008832
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatc 100  Q
    ||||||||||||  ||||||||||||||| | ||||| |||||||| |||| ||||| ||||||| ||| | ||||||||||| || ||| | |||||||    
T  26008989 ttatttgttggagtatttaatttaagttcctaattcatttattttttgaatactattaaattttattatagcgtaagatttgtttcttcttatgcgaatc 26008890  T
Q  101 -actctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
     || ||||||||||||| ||||| ||||||  || |||||||||||| ||||||||||    
T  26008889 aaccctgagataacggtacttaggaaggtggcatccctaatattggtacaaacctacc 26008832  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 24115032 - 24115116
Alignment:
Q  32 tattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaatcactctgagataacg 114  Q
    ||||||||||||| ||||||||||||||| |||||| |  || ||||||||| |||||||  ||||||| ||| |||||||||||    
T  24115032 tattcagttatttatcgaatcctatttaaatttactgtcgtgcgtaagatttctctcctcataagcgaaccaccctgagataacg 24115116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18829491 - 18829423
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactat 69  Q
    ||||||||||||| ||||||||||| |  |||||||| |||||||  ||||||||||||||||| ||||    
T  18829491 ttatttgttggattatttaatttaaatgatttattcatttattttaggaatcctatttaatttttctat 18829423  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 24080442 - 24080388
Alignment:
Q  13 taatttaatttaagttctttattcagttatttttcgaatcctatttaattttact 67  Q
    |||||||||||||  | |||| |||||||||||||| ||||||||||||||||||    
T  24080442 taatttaatttaaagtatttagtcagttatttttcgtatcctatttaattttact 24080388  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 45264870 - 45264923
Alignment:
Q  105 tgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 158  Q
    |||||||||||| ||||  || |||| |||||||||||||||| ||||||||||    
T  45264870 tgagataacggtacttaagaaagtgacatacctaatattggtgaaaacctacct 45264923  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 45264780 - 45264828
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattt 63  Q
    ||||||||||||||||||||||| ||| |||  ||||| ||||||||||    
T  45264780 atttaatttaagttctttattcaattactttatgaatcatatttaattt 45264828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 25934218 - 25934373
Alignment:
Q  2 tatttgttggataatttaatttaagttctttattcagttatttt-tcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatc 100  Q
    |||||||| ||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||  |||||||||| |||||| ||||||| |    
T  25934218 tatttgtttgattatttaatttaagttatttatccagttattttgtcgaatcctatttaattttactactgcataagatttgtatcctctgaagcgaacc 25934317  T
Q  101 actctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 156  Q
    |  |||||||| || | || || ||||| | |||| |||||||| || ||||||||    
T  25934318 agcctgagatatcgatactgaggaaggttacatacataatattgatgaaaacctac 25934373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 28279376 - 28279218
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatc 100  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||  |  | ||||||||||||| || || ||||||||||| || ||| ||||||||     
T  28279376 ttatttgttggattatttaatttaaattatttattcagttattttatgtttactatttaattttattactgcgtaagatttgtttcttctgaagcgaatt 28279277  T
Q  101 actct-gagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 158  Q
    | | | ||||||||  | ||||| || |||| ||| |||||||||||||||||||||||    
T  28279276 aatatggagataacaatacttaggaacgtgacatatctaatattggtgcaaacctacct 28279218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 17831021 - 17830869
Alignment:
Q  5 ttgttggataatttaatttaagttctttattcagttatttttc-gaatcctatttaattttactattgtg--taagatttgtctcctctaaagcgaatca 101  Q
    |||||||||| ||||||||||  ||| |||||| || |||||  |||||||||||||||||||||| |||  ||||| ||||||||| | ||||||| ||    
T  17831021 ttgttggatattttaatttaaaatctgtattcaattttttttttgaatcctatttaattttactatcgtgcgtaagagttgtctccttttaagcgaacca 17830922  T
Q  102 ctctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 154  Q
    | |||||||||||||  || | ||||||| |||||||||||| ||||| ||||    
T  17830921 ccctgagataacggtaattcggaaggtgacatacctaatattagtgcatacct 17830869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 20533255 - 20533413
Alignment:
Q  1 ttatttgttggataattt-aatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaaga-tttgtctcctctaaagcgaa 98  Q
    ||||||||||||| |||| |||||||||  |||||||| ||||||| ||||||||||||||||||||||| | ||||||  |||  || ||| ||| |||    
T  20533255 ttatttgttggattattttaatttaagtcttttattcatttattttacgaatcctatttaattttactatagcgtaagacattgcttcttctgaagtgaa 20533354  T
Q  99 tca-ctctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 156  Q
     || | ||| ||||||||| ||||  ||||||| |||| ||||||||||| ||||||||    
T  20533355 ccagccctgcgataacggtacttacgaaggtgacatacttaatattggtgtaaacctac 20533413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 13692929 - 13692872
Alignment:
Q  7 gttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttt 64  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  13692929 gttggattatttaatttaagttctttattcagttattttttgaatcctattaaatttt 13692872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 111811 - 111945
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaatcactctgagataa 112  Q
    |||||| ||||  |||||||||||||||||| ||||||||||||||||||||| |  || ||||| ||||||||| ||| |||||| |||  |||||||     
T  111811 atttaacttaaagtctttattcagttattttccgaatcctatttaattttactgtcatgcgtaaggtttgtctcccctagagcgaaccaccatgagatat 111910  T
Q  113 cggtgcttagaaaggtgaaatacctaatattggtg 147  Q
     | | |||||  |||||| ||| ||||||||||||    
T  111911 agctacttagggaggtgacataactaatattggtg 111945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 22920277 - 22920131
Alignment:
Q  13 taatttaatttaagttctttattcagttatttttcgaatcctatttaattttact--attgtgtaagatttgtctcctctaaagcgaatcactctgagat 110  Q
    |||||||||||||  |||||||||||||||||||  ||||||||||||| || ||    || |||||||||||||||||| |||| || |||  ||||||    
T  22920277 taatttaatttaaactctttattcagttatttttttaatcctatttaatcttgctgccgtgcgtaagatttgtctcctctgaagcaaaccaccttgagat 22920178  T
Q  111 aacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 157  Q
    || |||  | || ||||||| || |||| |||| ||||| |||||||    
T  22920177 aaaggtaataaggaaggtgacatgcctagtattagtgcatacctacc 22920131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 26308505 - 26308371
Alignment:
Q  15 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtg--taagatttgtctcctctaaagcgaatcactctgagataa 112  Q
    |||||||||||  | |||||| |||||| ||| |||||||||||||||||| | | |||  |||||||||||| |||| |||||||| ||  ||||||||    
T  26308505 atttaatttaaagtttttattaagttatattttgaatcctatttaattttattgtcgtgcgtaagatttgtcttctctgaagcgaataacattgagataa 26308406  T
Q  113 cggtgcttagaaaggtgaaatacctaatattggtg 147  Q
     | | |||||  |||||| ||| ||||||||||||    
T  26308405 agttacttagggaggtgacatatctaatattggtg 26308371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 32582897 - 32582833
Alignment:
Q  5 ttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactat 69  Q
    |||||| ||| |||||||||||||||||||| || ||||||  ||||||||||||| ||||||||    
T  32582897 ttgttgaatattttaatttaagttctttatttagatattttgtgaatcctatttaactttactat 32582833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 25921993 - 25922057
Alignment:
Q  2 tatttgttggataattt-aatttaagttctttattcagttatttttcgaatcctatttaatttta 65  Q
    |||||||||||| |||| |||||||||| ||||||| ||||||||  |||| |||||||||||||    
T  25921993 tatttgttggattattttaatttaagttttttattctgttattttatgaattctatttaatttta 25922057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 15544830 - 15544789
Alignment:
Q  119 ttagaaaggtgaaatacctaatattggtgcaaacctacctaa 160  Q
    |||| ||||||| ||| |||||||||||||||||||||||||    
T  15544830 ttaggaaggtgacatatctaatattggtgcaaacctacctaa 15544789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13617 - 13683
Alignment:
Q  1 ttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttact 67  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||| | ||||| ||||||||||||||    
T  13617 ttatttgttggatattttaatttaaagtctctattcagttatttattgaatcttatttaattttact 13683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 10859 - 11002
Alignment:
Q  13 taatttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcg-aatcactctgaga 109  Q
    ||||||||||||| |||||||||||||||||||  |||||| |  ||||||||||||  || |||||||||||| | ||| ||| | || |||  |||||    
T  10859 taatttaatttaaattctttattcagttattttgtgaatcc-aaataattttactatcgtgcgtaagatttgtcgcatctgaagtgaaaccaccatgaga 10957  T
Q  110 taacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 154  Q
    ||||| | || || ||||||| |||| ||||||||||||| ||||    
T  10958 taacgatactcaggaaggtgacatacataatattggtgcatacct 11002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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