View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_low_49 (Length: 282)

Name: NF4285_low_49
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_low_49
NF4285_low_49
[»] chr3 (10 HSPs)
chr3 (142-242)||(53747111-53747211)
chr3 (241-282)||(27959167-27959208)
chr3 (236-280)||(28219545-28219589)
chr3 (241-282)||(42613157-42613198)
chr3 (244-280)||(3009169-3009205)
chr3 (246-282)||(49679232-49679268)
chr3 (239-282)||(53642067-53642110)
chr3 (246-280)||(20494572-20494606)
chr3 (244-282)||(31523628-31523666)
chr3 (241-282)||(53642207-53642248)
[»] chr6 (8 HSPs)
chr6 (241-282)||(2142250-2142291)
chr6 (240-282)||(7507883-7507925)
chr6 (241-282)||(7098152-7098193)
chr6 (241-282)||(7506791-7506832)
chr6 (241-282)||(24484956-24484997)
chr6 (183-228)||(26472710-26472755)
chr6 (241-282)||(32737705-32737746)
chr6 (250-282)||(7507758-7507790)
[»] chr7 (16 HSPs)
chr7 (240-282)||(47799856-47799898)
chr7 (239-282)||(30102571-30102614)
chr7 (247-282)||(30588612-30588647)
chr7 (240-282)||(32520407-32520449)
chr7 (241-282)||(4269116-4269157)
chr7 (241-282)||(14696714-14696755)
chr7 (241-282)||(32520286-32520327)
chr7 (241-282)||(47080506-47080547)
chr7 (173-228)||(5793792-5793847)
chr7 (246-277)||(8256409-8256440)
chr7 (247-282)||(14696855-14696890)
chr7 (240-282)||(30102429-30102471)
chr7 (243-280)||(8607960-8607997)
chr7 (241-282)||(19027781-19027822)
chr7 (241-282)||(20726814-20726855)
chr7 (241-282)||(28528628-28528669)
[»] chr4 (24 HSPs)
chr4 (240-282)||(1015810-1015852)
chr4 (241-282)||(5524524-5524565)
chr4 (241-282)||(47834641-47834682)
chr4 (241-280)||(28405404-28405443)
chr4 (240-282)||(32146580-32146622)
chr4 (240-282)||(37002207-37002249)
chr4 (241-282)||(17492939-17492980)
chr4 (241-282)||(36688145-36688186)
chr4 (241-282)||(42010194-42010235)
chr4 (241-282)||(46238903-46238944)
chr4 (241-282)||(46239044-46239085)
chr4 (241-282)||(53526025-53526066)
chr4 (241-282)||(56269033-56269074)
chr4 (173-233)||(52661005-52661065)
chr4 (249-280)||(5524382-5524413)
chr4 (236-282)||(5361503-5361549)
chr4 (240-282)||(53526166-53526208)
chr4 (240-282)||(55160468-55160510)
chr4 (235-280)||(28701943-28701988)
chr4 (249-282)||(32146447-32146480)
chr4 (246-282)||(25218939-25218975)
chr4 (249-281)||(25219075-25219107)
chr4 (173-233)||(30508764-30508824)
chr4 (159-203)||(37142969-37143013)
[»] chr2 (12 HSPs)
chr2 (240-282)||(375070-375112)
chr2 (241-282)||(23459803-23459844)
chr2 (241-282)||(29188731-29188772)
chr2 (241-282)||(42380271-42380312)
chr2 (241-281)||(3354737-3354777)
chr2 (246-282)||(40254111-40254147)
chr2 (186-233)||(8063001-8063048)
chr2 (239-282)||(41435301-41435344)
chr2 (241-275)||(36402385-36402419)
chr2 (241-282)||(3594794-3594835)
chr2 (241-282)||(3594935-3594976)
chr2 (241-282)||(13780576-13780617)
[»] chr8 (11 HSPs)
chr8 (241-282)||(24241741-24241782)
chr8 (241-281)||(17867758-17867798)
chr8 (173-232)||(29819756-29819815)
chr8 (236-282)||(1937106-1937152)
chr8 (241-282)||(30905039-30905080)
chr8 (246-282)||(17867621-17867657)
chr8 (249-280)||(34612498-34612529)
chr8 (240-282)||(26749504-26749546)
chr8 (241-278)||(15010501-15010538)
chr8 (249-277)||(34612646-34612674)
chr8 (180-232)||(35205488-35205540)
[»] chr1 (7 HSPs)
chr1 (241-282)||(52279996-52280037)
chr1 (240-282)||(6948786-6948828)
chr1 (246-280)||(18107421-18107455)
chr1 (241-282)||(13615298-13615339)
chr1 (241-282)||(18107278-18107319)
chr1 (241-282)||(30077601-30077642)
chr1 (246-282)||(36004905-36004941)
[»] scaffold0664 (2 HSPs)
scaffold0664 (241-282)||(4657-4698)
scaffold0664 (246-281)||(4799-4834)
[»] chr5 (10 HSPs)
chr5 (240-281)||(2984346-2984387)
chr5 (241-282)||(3041264-3041305)
chr5 (241-282)||(36290679-36290720)
chr5 (241-280)||(11960546-11960585)
chr5 (241-282)||(2883784-2883825)
chr5 (187-228)||(36880066-36880107)
chr5 (241-282)||(40162666-40162707)
chr5 (246-282)||(8675098-8675134)
chr5 (248-280)||(19179395-19179427)
chr5 (240-280)||(36290528-36290568)
[»] scaffold0712 (1 HSPs)
scaffold0712 (241-281)||(3030-3070)
[»] scaffold0709 (1 HSPs)
scaffold0709 (241-281)||(3050-3090)
[»] scaffold0238 (1 HSPs)
scaffold0238 (241-282)||(25709-25750)
[»] scaffold0171 (1 HSPs)
scaffold0171 (241-282)||(17261-17302)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 53747211 - 53747111
Alignment:
Q  142 ggttatacggatgcaattgattttaatgggatgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattaccacctaaattg 241  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  53747211 ggttatacggatgcaattgaatttaatgggatagattaacagttcaaaacaattttacacattcaaacaatcaaaacattttaaattatcacctaaattg 53747112  T
Q  242 g 242  Q
    |    
T  53747111 g 53747111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 27959208 - 27959167
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  27959208 gggtcaagatcctctccatttataaatttttccatttgttgc 27959167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 28219589 - 28219545
Alignment:
Q  236 aaattgggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    
T  28219589 aaatggggtcaagatcctctccatttataaatttttccatttgtt 28219545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 42613198 - 42613157
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  42613198 gggtcaagatcctctccatttataaattttttcatttgttgc 42613157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 3009169 - 3009205
Alignment:
Q  244 ttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3009169 ttaagatcctctccatttataaatttctccatttgtt 3009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 49679232 - 49679268
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||| ||||||||||    
T  49679232 aagatcctctccatttataaattttttcatttgttgc 49679268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 53642067 - 53642110
Alignment:
Q  239 ttgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  53642067 ttgggttaagattctctccatttataattttttctatttgttgc 53642110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 20494606 - 20494572
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||||||||| ||||||||||    
T  20494606 aagatcctctccatttataaatttctccatttgtt 20494572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 31523628 - 31523666
Alignment:
Q  244 ttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  31523628 ttaagatcctctccatttataaatttctccatttattgc 31523666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 53642248 - 53642207
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||| ||||||||||||||  |||||||||||||||    
T  53642248 gggttaagattctctccatttataacgttttccatttgttgc 53642207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 2142250 - 2142291
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2142250 gggttaagatcctctccatttataaatttttccatttgttgc 2142291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 7507925 - 7507883
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  7507925 tgggttaagatcctctccatttataactttttccatttgttgc 7507883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 7098152 - 7098193
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  7098152 gggtaaagatcctctccatttataactttttccatttgttgc 7098193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 7506791 - 7506832
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||| |||||||| ||||||||||| ||||    
T  7506791 gggttaagatcctctctatttataactttttccatttattgc 7506832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 24484997 - 24484956
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||||||||||| ||||||||    
T  24484997 gggtcaagatcctcttcatttataaatttttccgtttgttgc 24484956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 26472755 - 26472710
Alignment:
Q  183 gttcaaaacaattttacacatacaaacaataaaaacattttaaatt 228  Q
    ||||||||||||||||||| ||||| |||| |||||||||| ||||    
T  26472755 gttcaaaacaattttacacgtacaatcaatcaaaacattttgaatt 26472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 32737705 - 32737746
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||| |||||||| ||||||||||||||||    
T  32737705 gggtaaagatcctctcgatttataactttttccatttgttgc 32737746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 7507758 - 7507790
Alignment:
Q  250 tcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||| ||||||||||||||||    
T  7507758 tcctctccatttataactttttccatttgttgc 7507790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 47799856 - 47799898
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  47799856 tgggtcaagatcctctccatttataaatttttccatttgttgc 47799898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 30102614 - 30102571
Alignment:
Q  239 ttgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  30102614 ttgggtaaagatcctctccatttataactttttccatttgttgc 30102571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 30588647 - 30588612
Alignment:
Q  247 agatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||||||||||||||    
T  30588647 agatcctctccatttataaatttttccatttgttgc 30588612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 32520449 - 32520407
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  32520449 tgggtcaagatcctctccatttataactttttccatttgttgc 32520407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 4269116 - 4269157
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  4269116 gggtcaagatcctctccatttataactttttccatttgttgc 4269157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 14696714 - 14696755
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  14696714 gggtaaagatcctctccatttataattttttccatttgttgc 14696755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 32520286 - 32520327
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  32520286 gggtaaagatcctctccatttataactttttccatttgttgc 32520327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 47080547 - 47080506
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  47080547 gggtcaagatcctctccatttataaattttttcatttgttgc 47080506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 5793792 - 5793847
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaatt 228  Q
    |||||| |||||||||||||||||| |||| ||||  ||| |||||||||||||||    
T  5793792 tgggttgacggttcaaaacaattttgcacacacaacaaatcaaaacattttaaatt 5793847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 8256409 - 8256440
Alignment:
Q  246 aagatcctctccatttataaatttttccattt 277  Q
    ||||||||||||||||||||||||||||||||    
T  8256409 aagatcctctccatttataaatttttccattt 8256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 14696890 - 14696855
Alignment:
Q  247 agatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14696890 agatcctctccatttataactttttccatttgttgc 14696855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 30102429 - 30102471
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| ||||||||||||||||||||  |||||||||||||||    
T  30102429 tgggtcaagatcctctccatttataaccttttccatttgttgc 30102471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 8607960 - 8607997
Alignment:
Q  243 gttaagatcctctccatttataaatttttccatttgtt 280  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  8607960 gttaagatcctctccatttataactttctccatttgtt 8607997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 19027822 - 19027781
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  19027822 gggtcaagatcctcttcatttataactttttccatttgttgc 19027781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 20726814 - 20726855
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  20726814 gggtcaagatcctcttcatttataactttttccatttgttgc 20726855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 28528669 - 28528628
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  28528669 gggtcaagatcctctccatttataaatttttttatttgttgc 28528628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 1015810 - 1015852
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  1015810 tgggttaagatcctctccatttataaattttttcatttgttgc 1015852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 5524565 - 5524524
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  5524565 gggtcaagatcctctccatttataaatttttccatttgttgc 5524524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 47834682 - 47834641
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  47834682 gggtcaagatcctctccatttataaatttttccatttgttgc 47834641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 28405443 - 28405404
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  28405443 gggtaaagatcctctccatttataaatttttccatttgtt 28405404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 32146622 - 32146580
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  32146622 tgggtaaagatcctctccatttataactttttccatttgttgc 32146580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 37002207 - 37002249
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  37002207 tgggttaagatcctctccatttataaatttctccatttattgc 37002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 17492939 - 17492980
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  17492939 gggtaaagatcctctccatttataactttttccatttgttgc 17492980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 36688145 - 36688186
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  36688145 gggtcaagatcctctccatttataaatttctccatttgttgc 36688186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 42010235 - 42010194
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  42010235 gggtcaagatcctctccatttataaattttttcatttgttgc 42010194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 46238903 - 46238944
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  46238903 gggtcaagatcctctccatttataactttttccatttgttgc 46238944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 46239085 - 46239044
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  46239085 gggtaaagatcctctccatttataactttttccatttgttgc 46239044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 53526025 - 53526066
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  53526025 gggtcaagatcctctccatttataactttttccatttgttgc 53526066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 56269033 - 56269074
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  56269033 gggtcaagatcctctccatttataaattttttcatttgttgc 56269074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 52661005 - 52661065
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattaccac 233  Q
    |||||||||||| ||||||||||||||||| || | |||| |||| ||||| |||||||||    
T  52661005 tgggttaacggtccaaaacaattttacacacacgaccaatcaaaatattttgaattaccac 52661065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 280
Target Start/End: Original strand, 5524382 - 5524413
Alignment:
Q  249 atcctctccatttataaatttttccatttgtt 280  Q
    ||||||||||||||||||||||||||||||||    
T  5524382 atcctctccatttataaatttttccatttgtt 5524413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 5361549 - 5361503
Alignment:
Q  236 aaattgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||| || ||||||| ||||||||||||||||||||||||||    
T  5361549 aaatggggtcaaaatcctcttcatttataaatttttccatttgttgc 5361503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 53526208 - 53526166
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| || |||||||||||||    
T  53526208 tgggtaaagatcctctccatttataacttcttccatttgttgc 53526166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 55160510 - 55160468
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| ||||||||||||||||||||  |||||||||||||||    
T  55160510 tgggtcaagatcctctccatttataatcttttccatttgttgc 55160468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 28701988 - 28701943
Alignment:
Q  235 taaattgggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| |||||||| || |||||||||||||||||| ||||||||||    
T  28701988 taaaatgggttaaaattctctccatttataaatttctccatttgtt 28701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 32146447 - 32146480
Alignment:
Q  249 atcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||| ||||||||||||||||    
T  32146447 atcctctccatttataactttttccatttgttgc 32146480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 25218939 - 25218975
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| |||||| |||||||||    
T  25218939 aagatcctctccatttataactttttctatttgttgc 25218975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 25219107 - 25219075
Alignment:
Q  249 atcctctccatttataaatttttccatttgttg 281  Q
    ||||||||||||||||| |||||||||||||||    
T  25219107 atcctctccatttataactttttccatttgttg 25219075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 30508764 - 30508824
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattaccac 233  Q
    |||||||||||| |||||||| ||| |||| |||| |||| ||||||||| ||||| ||||    
T  30508764 tgggttaacggtccaaaacaactttgcacacacaatcaatcaaaacatttaaaattgccac 30508824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 37142969 - 37143013
Alignment:
Q  159 tgattttaatgggatgggttaacggttcaaaacaattttacacat 203  Q
    ||||||||||| | |||||| |||||||||||||||||| |||||    
T  37142969 tgattttaatgtggtgggttgacggttcaaaacaattttgcacat 37143013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 375112 - 375070
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  375112 tgggttaagatcctctccatttataaatttctccatttgttgc 375070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 23459803 - 23459844
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  23459803 gggtcaagatcctctccatttataaatttttccatttgttgc 23459844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 29188772 - 29188731
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  29188772 gggtcaagatcctctccatttataaatttttccatttgttgc 29188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 42380312 - 42380271
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  42380312 gggttaagatcctctccatttataactttttccatttgttgc 42380271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 3354737 - 3354777
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  3354737 gggtcaagatcctctccatttataaatttttccatttgttg 3354777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 40254111 - 40254147
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||||||||||||||    
T  40254111 aagatcctctccatttataactttttccatttgttgc 40254147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 8063001 - 8063048
Alignment:
Q  186 caaaacaattttacacatacaaacaataaaaacattttaaattaccac 233  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||| ||||    
T  8063001 caaaacagttttacacacacaaacaattaaaacattttaaattgccac 8063048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 41435344 - 41435301
Alignment:
Q  239 ttgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  41435344 ttgggtcaagattctctccatttataactttttccatttgttgc 41435301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 36402419 - 36402385
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccat 275  Q
    |||| ||||||||||||||||||||||||||||||    
T  36402419 gggtcaagatcctctccatttataaatttttccat 36402385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 3594794 - 3594835
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||| ||||||||||    
T  3594794 gggtcaagatcctctccatttataacttttttcatttgttgc 3594835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 3594976 - 3594935
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||| ||||    
T  3594976 gggtaaagatcctctccatttataactttttccatttattgc 3594935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 13780617 - 13780576
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||||||||||||  |||||||||||||||    
T  13780617 gggtaaagatcctctccatttataacattttccatttgttgc 13780576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 24241782 - 24241741
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  24241782 gggtcaagatcctctccatttataaatttttccatttgttgc 24241741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 17867798 - 17867758
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17867798 gggttaagatcctctccatttataactttttccatttgttg 17867758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 29819815 - 29819756
Alignment:
Q  173 tgggttaacggttcaaaacaattttacacatacaaacaataaaaacattttaaattacca 232  Q
    |||||| || |||||||| |||||||||||||| | |||| |||||||||||||||||||    
T  29819815 tgggttgactgttcaaaataattttacacatacgatcaattaaaacattttaaattacca 29819756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 1937106 - 1937152
Alignment:
Q  236 aaattgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  1937106 aaatggggtcaagatcctctccatttataaatttttcaatttgttgc 1937152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 30905080 - 30905039
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  30905080 gggtaaagatcctctccatttataattttttccatttgttgc 30905039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 17867621 - 17867657
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17867621 aagatcctctccatttataactttttccatttgttgc 17867657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 280
Target Start/End: Original strand, 34612498 - 34612529
Alignment:
Q  249 atcctctccatttataaatttttccatttgtt 280  Q
    ||||||||||||||||||||||||||||||||    
T  34612498 atcctctccatttataaatttttccatttgtt 34612529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 26749504 - 26749546
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| || ||||||||||||||||||||||| ||||||||||    
T  26749504 tgggtcaatatcctctccatttataaattttttcatttgttgc 26749546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 15010501 - 15010538
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttg 278  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  15010501 gggttaagatcctcttcatttataattttttccatttg 15010538  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 34612674 - 34612646
Alignment:
Q  249 atcctctccatttataaatttttccattt 277  Q
    |||||||||||||||||||||||||||||    
T  34612674 atcctctccatttataaatttttccattt 34612646  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 35205540 - 35205488
Alignment:
Q  180 acggttcaaaacaattttacacatacaaacaataaaaacattttaaattacca 232  Q
    ||||| |||||||||||| |||||||||  ||| ||||||||| |||||||||    
T  35205540 acggtacaaaacaattttgcacatacaacaaattaaaacatttaaaattacca 35205488  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 52279996 - 52280037
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  52279996 gggttaagatcctctccatttataaattttttcatttgttgc 52280037  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 6948786 - 6948828
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||    
T  6948786 tgggtaaagatcctctccatttataatttttttcatttgttgc 6948828  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 18107455 - 18107421
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||||| ||||||||||||||    
T  18107455 aagatcctctccatttataactttttccatttgtt 18107421  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 13615298 - 13615339
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  13615298 gggtaaagatcctctacatttataactttttccatttgttgc 13615339  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 18107278 - 18107319
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||| ||||||||||    
T  18107278 gggtaaagatcctctccatttataacttttttcatttgttgc 18107319  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 30077601 - 30077642
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||| ||||    
T  30077601 gggtcaagatcctctccatttataaattttttcatttattgc 30077642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 36004941 - 36004905
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  36004941 aagatcctctccatttataacttttttcatttgttgc 36004905  T

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Target: scaffold0664 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 4657 - 4698
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  4657 gggtaaagatcctctccatttataactttttccatttgttgc 4698  T

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Target: scaffold0664; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 4834 - 4799
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttg 281  Q
    |||||||||||||||||||| |||||||||||||||    
T  4834 aagatcctctccatttataactttttccatttgttg 4799  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 2984346 - 2984387
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  2984346 tgggtcaagatcctctccatttataaattttttcatttgttg 2984387  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 3041264 - 3041305
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  3041264 gggtcaagatcctctccatttataaattttttcatttgttgc 3041305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 36290720 - 36290679
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  36290720 gggtcaagatcctctccatttataaatttttctatttgttgc 36290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 11960546 - 11960585
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgtt 280  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  11960546 gggtcaagatcctctccatttataaatttttctatttgtt 11960585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 2883825 - 2883784
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    ||||||||||||||||||||||| | ||||| ||||||||||    
T  2883825 gggttaagatcctctccatttattacttttttcatttgttgc 2883784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 36880107 - 36880066
Alignment:
Q  187 aaaacaattttacacatacaaacaataaaaacattttaaatt 228  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  36880107 aaaacaattttgcacatacaatcaatcaaaacattttaaatt 36880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 40162666 - 40162707
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||| |||||| |||||||||    
T  40162666 gggtcaagatcctctccatttataactttttctatttgttgc 40162707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 8675134 - 8675098
Alignment:
Q  246 aagatcctctccatttataaatttttccatttgttgc 282  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  8675134 aagatcctctccatttataacttttttcatttgttgc 8675098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 19179395 - 19179427
Alignment:
Q  248 gatcctctccatttataaatttttccatttgtt 280  Q
    |||||||||||||||||| ||||||||||||||    
T  19179395 gatcctctccatttataattttttccatttgtt 19179427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 36290528 - 36290568
Alignment:
Q  240 tgggttaagatcctctccatttataaatttttccatttgtt 280  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  36290528 tgggtcaatatcctctccatttataaattttttcatttgtt 36290568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 3030 - 3070
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  3030 gggttaagaccctctccatttataaattttttcatttgttg 3070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 3050 - 3090
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttg 281  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  3050 gggttaagaccctctccatttataaattttttcatttgttg 3090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 25750 - 25709
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  25750 gggtaaagatcctctacatttataactttttccatttgttgc 25709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 17261 - 17302
Alignment:
Q  241 gggttaagatcctctccatttataaatttttccatttgttgc 282  Q
    |||| |||||||||||||||||||||||| | ||||||||||    
T  17261 gggtcaagatcctctccatttataaatttcttcatttgttgc 17302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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