View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_5 (Length: 612)
Name: NF4285_low_5
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 25 - 608
Target Start/End: Complemental strand, 17144101 - 17143518
Alignment:
| Q |
25 |
gttaagatacaaaaattgatacgatgccaaacataaagggtcaaaagttcgtttaaacctaattattttcgtaacggaacaaattgcgtccgtgtcaaag |
124 |
Q |
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|||||||| ||||||||||||||||||||| |||| | |||||| | | ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17144101 |
gttaagatgtaaaaattgatacgatgccaaatataagagatcaaaattacatttaaacctaattattttcataacggaacaaattgcgtccgtgtcaaag |
17144002 |
T |
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| Q |
125 |
tgattgcatcgtaaccgtaataactagtccccactttgtctttattttcatacgtgcgacaaaaagcttttaatatgacaacaaaagaaattaatgacca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17144001 |
tgattgcatcgtaaccgtaataactagtccccactttgtctttattttcatacgtgcgacaaaaagcttttaatatgacaacaaaagaaattaatgacca |
17143902 |
T |
|
| Q |
225 |
aattacacttccaaaaaaccagcgtcttatatgtttaggaatgatttagaagttcataaataatattagtctgaaaaagttgtagtagaacctaactgat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17143901 |
aattacacttccaaaaaaccagcgtcttatatgtttaggaatgatttagaagttcataaataatattagtctgaaaaagttgtagtagaacctaactgat |
17143802 |
T |
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| Q |
325 |
atggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagacag |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17143801 |
atggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagacag |
17143702 |
T |
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| Q |
425 |
tgaagatatggaagatagcatttccagtggctttgtgttcactgtttcagttcctcacaaactcttcaacttcagtctatgctggtcatcttggagacgt |
524 |
Q |
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| T |
17143701 |
tgaagatatggaagatagcacttccagtggccttgtgttcactgtttcagttcctcacaaactcttcaacttcagtctatgctggtcatcttggagacgt |
17143602 |
T |
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| Q |
525 |
tgagctttcttctttctctctttttcaaagtatcatcaactgcatctattccttgctggttagtttgtatctttcttctcactc |
608 |
Q |
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| T |
17143601 |
tgagctttcttctttctctctttttcaaagtatcatcaactgcatctattccttgctggttagtttctatctttcttatcactc |
17143518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 323 - 593
Target Start/End: Complemental strand, 17155974 - 17155704
Alignment:
| Q |
323 |
atatggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagac |
422 |
Q |
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| T |
17155974 |
atatggaaacaccattgctgaccaaaagatttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagac |
17155875 |
T |
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| Q |
423 |
agtgaagatatggaagatagcatttccagtggctttgtgttcactgtttcagttcctcacaaactcttcaacttcagtctatgctggtcatcttggagac |
522 |
Q |
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| T |
17155874 |
agtgaagatatggaagatagcacttccagtggctttgtgttatttgtttcaatacctcacaaacacttcaacttccatctatgctggtcatcttggagat |
17155775 |
T |
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| Q |
523 |
gttgagctttcttctttctctctttttcaaagtatcatcaactgcatctattccttgctggttagtttgta |
593 |
Q |
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|||| || |||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||| |
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| T |
17155774 |
attgaactctcttctttctctctttttcaaagtgtcctcaattgcatctattctttgctggttagtttgta |
17155704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 308 - 474
Target Start/End: Complemental strand, 17170484 - 17170318
Alignment:
| Q |
308 |
agtagaacctaactgatatggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgt |
407 |
Q |
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||||||| || ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||| ||||| ||||| ||| |||| |
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| T |
17170484 |
agtagaaactcactcatatggaaacaccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgt |
17170385 |
T |
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| Q |
408 |
tttgtggagtgagacagtgaagatatggaagatagcatttccagtggctttgtgttcactgtttcag |
474 |
Q |
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|||||||| ||||||| |||||||||||||||||||| ||||||||||||||| || ||| |||||| |
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| T |
17170384 |
tttgtggaatgagacattgaagatatggaagatagcaattccagtggctttgtctttactttttcag |
17170318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 317459 - 317514
Alignment:
| Q |
33 |
acaaaaattgatacgatgccaaacataaagggtcaaaagttcgtttaaacctaatta |
89 |
Q |
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| T |
317459 |
acaaaaattgctacgatgacaaacataa-gggtcaaaagtgcgtttaagccaaatta |
317514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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