View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_53 (Length: 265)
Name: NF4285_low_53
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 248
Target Start/End: Complemental strand, 35030221 - 35030074
Alignment:
| Q |
101 |
ttaagtttaacatttgtatcatattagnnnnnnnagtttaaattggtcttttaagtcattaaaagtgtacacctagtcctttagatcatgatatatatgc |
200 |
Q |
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| T |
35030221 |
ttaagtttaacatttgtatcatattggtttttttagtttaaattggtctattaagtcattaaaagtgtacacctagtcctttagatcatgatatatatgc |
35030122 |
T |
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| Q |
201 |
accattatccttttttcatcaaactaagttaaaagtgtgtatgtggat |
248 |
Q |
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| T |
35030121 |
accattatccttttttcatcaaactcagttaaaagtgtgtatgtggat |
35030074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 35030277 - 35030230
Alignment:
| Q |
4 |
caaatatatacttttaatttgtgtgttcatcatagaagctcccttaaa |
51 |
Q |
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| T |
35030277 |
caaatatatacttttaatttgtgtgttgatcatagaagctcccttaaa |
35030230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 35030313 - 35030281
Alignment:
| Q |
47 |
ttaaaattaactcatatgtatctttataatata |
79 |
Q |
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| T |
35030313 |
ttaaaactaactcatatgtatctttataatata |
35030281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 48546766 - 48546837
Alignment:
| Q |
177 |
tcctttagatcatgatatatatgcaccattatccttttttcatcaaactaagtt-aaaagtgtgtatgtgga |
247 |
Q |
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| T |
48546766 |
tcctttaaatcataaaatatttgcaccattatcctattttcatcaaacttagttaaaaagtgtttatgtgga |
48546837 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 10840073 - 10840020
Alignment:
| Q |
194 |
tatatgcaccattatccttttttcatcaaactaagttaaaagtgtgtatgtgga |
247 |
Q |
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| T |
10840073 |
tatatgcaccattatcttattttcatcaaactcggttaaaagtgtttatgtgga |
10840020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 34366884 - 34366977
Alignment:
| Q |
141 |
aattggtcttttaagtcattaaaagtgtacacctagtcctttagatcatgatatatatgcaccattatccttttttcatcaaactaagttaaaa |
234 |
Q |
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| T |
34366884 |
aattggtcctttatgttagtagaagtgtgcacctagtcctttaagtcataaaatatatgcgccatttccctttttccatcaaacttagttaaaa |
34366977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 25576289 - 25576218
Alignment:
| Q |
160 |
taaaagtgtacacctagtcctttagatcatgatatatatgcaccattatccttttttcatcaaactaagtta |
231 |
Q |
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| T |
25576289 |
taaaagtgtgcacctagttctttaggccataaaatatatgcaccattaccctctttccatcaaactcagtta |
25576218 |
T |
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