View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_low_54 (Length: 261)

Name: NF4285_low_54
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_low_54
NF4285_low_54
[»] chr4 (37 HSPs)
chr4 (6-254)||(48645379-48645628)
chr4 (1-146)||(49524557-49524703)
chr4 (1-146)||(20493946-20494092)
chr4 (1-142)||(54387711-54387852)
chr4 (1-142)||(35401868-35402010)
chr4 (1-122)||(39345683-39345805)
chr4 (1-176)||(43507286-43507462)
chr4 (1-142)||(51013714-51013856)
chr4 (1-176)||(320694-320870)
chr4 (1-176)||(33265804-33265980)
chr4 (1-176)||(43508447-43508623)
chr4 (1-176)||(43520903-43521079)
chr4 (1-175)||(834837-835012)
chr4 (1-175)||(5439442-5439617)
chr4 (101-200)||(11641860-11641959)
chr4 (1-176)||(33264501-33264678)
chr4 (1-176)||(319392-319568)
chr4 (1-176)||(4173534-4173710)
chr4 (1-175)||(833342-833517)
chr4 (1-175)||(5437930-5438105)
chr4 (1-109)||(42982313-42982422)
chr4 (124-202)||(54387686-54387763)
chr4 (1-108)||(11254238-11254345)
chr4 (204-254)||(833804-833854)
chr4 (204-254)||(5439105-5439155)
chr4 (80-176)||(4172311-4172407)
chr4 (83-142)||(11641884-11641943)
chr4 (1-63)||(4169805-4169867)
chr4 (204-254)||(42981972-42982022)
chr4 (204-254)||(51013354-51013404)
chr4 (117-176)||(49524561-49524620)
chr4 (204-254)||(11254628-11254678)
chr4 (204-254)||(41760297-41760347)
chr4 (204-254)||(54387371-54387421)
chr4 (117-176)||(20494029-20494088)
chr4 (1-63)||(2691492-2691554)
chr4 (80-109)||(2691606-2691635)
[»] chr3 (53 HSPs)
chr3 (1-245)||(48829475-48829722)
chr3 (3-202)||(51686162-51686362)
chr3 (1-200)||(610992-611192)
chr3 (1-202)||(46113873-46114075)
chr3 (1-142)||(17516801-17516943)
chr3 (1-142)||(21350433-21350575)
chr3 (1-146)||(54412371-54412517)
chr3 (1-176)||(2661702-2661878)
chr3 (1-142)||(2378811-2378953)
chr3 (1-122)||(27897269-27897391)
chr3 (1-142)||(42282301-42282443)
chr3 (1-176)||(53092742-53092918)
chr3 (1-176)||(53094067-53094243)
chr3 (1-142)||(7883447-7883589)
chr3 (1-142)||(23291689-23291830)
chr3 (1-142)||(35903944-35904086)
chr3 (1-176)||(3150371-3150547)
chr3 (1-176)||(46310230-46310406)
chr3 (1-176)||(46611097-46611273)
chr3 (1-142)||(30598456-30598598)
chr3 (1-142)||(41979180-41979322)
chr3 (5-122)||(43766895-43767013)
chr3 (1-176)||(38193304-38193480)
chr3 (1-176)||(44795684-44795860)
chr3 (1-176)||(46609268-46609444)
chr3 (1-176)||(53187861-53188037)
chr3 (1-142)||(44268100-44268242)
chr3 (1-176)||(46308926-46309102)
chr3 (1-175)||(28626530-28626705)
chr3 (1-142)||(54899902-54900044)
chr3 (1-176)||(38192014-38192178)
chr3 (117-200)||(42282277-42282360)
chr3 (204-254)||(41978820-41978870)
chr3 (204-254)||(42281969-42282019)
chr3 (204-254)||(51685847-51685897)
chr3 (204-254)||(53188347-53188397)
chr3 (117-177)||(17516800-17516860)
chr3 (204-254)||(7883896-7883946)
chr3 (204-254)||(27897762-27897812)
chr3 (204-254)||(35904396-35904446)
chr3 (204-254)||(21350091-21350141)
chr3 (204-254)||(23292141-23292191)
chr3 (124-177)||(30598546-30598599)
chr3 (106-146)||(2378764-2378804)
chr3 (117-177)||(23291771-23291831)
chr3 (204-254)||(2378410-2378460)
chr3 (204-254)||(43766518-43766568)
chr3 (204-254)||(44274915-44274965)
chr3 (204-245)||(24846052-24846093)
chr3 (204-245)||(30598907-30598947)
chr3 (204-245)||(46199125-46199166)
chr3 (117-177)||(2378810-2378870)
chr3 (117-177)||(21350432-21350492)
[»] chr6 (35 HSPs)
chr6 (6-254)||(10569635-10569884)
chr6 (1-200)||(21068744-21068944)
chr6 (1-200)||(21045429-21045629)
chr6 (1-142)||(7051073-7051215)
chr6 (1-154)||(9399851-9400005)
chr6 (1-141)||(6902727-6902868)
chr6 (117-254)||(7050995-7051132)
chr6 (1-142)||(21091213-21091355)
chr6 (1-176)||(32518291-32518467)
chr6 (1-142)||(11357024-11357164)
chr6 (1-146)||(20525158-20525304)
chr6 (1-176)||(18644898-18645074)
chr6 (1-108)||(33267180-33267288)
chr6 (1-176)||(32437246-32437422)
chr6 (1-176)||(3480452-3480627)
chr6 (1-142)||(13610808-13610941)
chr6 (12-142)||(33276925-33277053)
chr6 (1-176)||(32454367-32454542)
chr6 (117-199)||(6902703-6902785)
chr6 (118-200)||(21091297-21091379)
chr6 (1-112)||(7371294-7371406)
chr6 (117-189)||(33276994-33277066)
chr6 (204-252)||(18644650-18644698)
chr6 (204-254)||(6902386-6902436)
chr6 (119-177)||(9399862-9399920)
chr6 (204-254)||(32454859-32454909)
chr6 (204-254)||(32437729-32437779)
chr6 (204-254)||(33267595-33267645)
chr6 (204-245)||(11356631-11356672)
chr6 (1-78)||(14337785-14337861)
chr6 (204-254)||(7371681-7371731)
chr6 (204-254)||(9399545-9399595)
chr6 (204-254)||(20524804-20524854)
chr6 (117-177)||(11357023-11357083)
chr6 (80-108)||(14337898-14337926)
[»] chr2 (40 HSPs)
chr2 (1-245)||(19581533-19581778)
chr2 (1-142)||(39456608-39456750)
chr2 (1-142)||(42517676-42517818)
chr2 (1-146)||(16376855-16377001)
chr2 (1-146)||(19906801-19906947)
chr2 (1-146)||(6799231-6799377)
chr2 (1-142)||(39663273-39663413)
chr2 (1-142)||(40561706-40561848)
chr2 (9-176)||(16764406-16764574)
chr2 (4-174)||(24205720-24205891)
chr2 (1-146)||(34400433-34400573)
chr2 (1-176)||(2577275-2577450)
chr2 (11-176)||(14387478-14387644)
chr2 (1-146)||(17697933-17698079)
chr2 (1-100)||(6783483-6783583)
chr2 (12-81)||(31474969-31475038)
chr2 (1-78)||(37646371-37646448)
chr2 (1-175)||(37021981-37022155)
chr2 (1-78)||(161968-162045)
chr2 (204-254)||(6783935-6783985)
chr2 (204-245)||(24206180-24206221)
chr2 (117-177)||(42517759-42517819)
chr2 (117-176)||(16376938-16376997)
chr2 (204-254)||(2768310-2768360)
chr2 (204-254)||(17697603-17697653)
chr2 (204-254)||(37021614-37021664)
chr2 (208-254)||(40561346-40561392)
chr2 (204-245)||(34400880-34400921)
chr2 (204-254)||(39663712-39663762)
chr2 (204-254)||(42518127-42518177)
chr2 (84-141)||(6783592-6783649)
chr2 (117-177)||(39456607-39456667)
chr2 (207-254)||(6798902-6798949)
chr2 (117-176)||(17697937-17697996)
chr2 (117-176)||(19906884-19906943)
chr2 (117-176)||(34400510-34400569)
chr2 (144-190)||(31474893-31474939)
chr2 (80-109)||(161902-161931)
chr2 (80-109)||(31474906-31474935)
chr2 (136-189)||(37646293-37646346)
[»] chr8 (51 HSPs)
chr8 (1-200)||(3152076-3152276)
chr8 (1-142)||(26238845-26238987)
chr8 (1-146)||(42943250-42943396)
chr8 (1-142)||(22273719-22273861)
chr8 (1-177)||(41824009-41824186)
chr8 (1-141)||(5037893-5038032)
chr8 (1-176)||(27692631-27692807)
chr8 (1-142)||(13106923-13107065)
chr8 (1-142)||(13283823-13283965)
chr8 (1-176)||(29238981-29239157)
chr8 (1-142)||(41040839-41040982)
chr8 (1-142)||(8608357-8608499)
chr8 (1-142)||(33707325-33707467)
chr8 (1-142)||(38548659-38548801)
chr8 (1-176)||(601498-601674)
chr8 (1-176)||(29237270-29237446)
chr8 (1-176)||(33761188-33761364)
chr8 (1-176)||(35510613-35510789)
chr8 (117-202)||(26238928-26239013)
chr8 (1-175)||(27404329-27404504)
chr8 (83-202)||(41824126-41824245)
chr8 (1-176)||(35509333-35509509)
chr8 (1-175)||(15308056-15308231)
chr8 (1-175)||(15488425-15488600)
chr8 (1-176)||(33762511-33762683)
chr8 (1-142)||(43261967-43262107)
chr8 (1-80)||(17807138-17807217)
chr8 (1-108)||(13484664-13484771)
chr8 (204-254)||(13107375-13107425)
chr8 (204-254)||(13283463-13283513)
chr8 (204-254)||(15307719-15307769)
chr8 (204-254)||(15488088-15488138)
chr8 (204-254)||(26239280-26239330)
chr8 (204-254)||(27404791-27404841)
chr8 (204-254)||(29238621-29238671)
chr8 (204-254)||(38548299-38548349)
chr8 (80-142)||(41824157-41824219)
chr8 (1-78)||(29694210-29694287)
chr8 (204-242)||(8608809-8608847)
chr8 (204-254)||(22273369-22273419)
chr8 (117-180)||(41824092-41824155)
chr8 (204-254)||(41041282-41041332)
chr8 (204-254)||(41824510-41824560)
chr8 (204-254)||(42942896-42942946)
chr8 (117-177)||(41040922-41040983)
chr8 (117-177)||(43261966-43262026)
chr8 (1-39)||(15562542-15562580)
chr8 (204-254)||(40338370-40338420)
chr8 (80-109)||(15562646-15562675)
chr8 (204-240)||(29693813-29693849)
chr8 (124-176)||(38548659-38548711)
[»] chr7 (54 HSPs)
chr7 (1-154)||(47384413-47384567)
chr7 (1-142)||(37114060-37114202)
chr7 (6-142)||(35691551-35691688)
chr7 (1-142)||(38472379-38472521)
chr7 (1-142)||(39857764-39857906)
chr7 (1-142)||(6605225-6605367)
chr7 (1-142)||(13169511-13169653)
chr7 (1-142)||(24226700-24226842)
chr7 (1-176)||(29994996-29995172)
chr7 (1-142)||(34775117-34775259)
chr7 (1-142)||(37791773-37791915)
chr7 (90-202)||(38549714-38549826)
chr7 (1-112)||(45361134-45361246)
chr7 (1-176)||(35402088-35402264)
chr7 (1-176)||(35403413-35403589)
chr7 (1-142)||(22155686-22155816)
chr7 (1-142)||(22211601-22211731)
chr7 (1-176)||(20479514-20479689)
chr7 (1-108)||(48227803-48227911)
chr7 (40-146)||(23904755-23904861)
chr7 (1-63)||(46437226-46437288)
chr7 (1-99)||(27664549-27664648)
chr7 (1-122)||(77862-77984)
chr7 (204-254)||(77484-77534)
chr7 (204-254)||(20479147-20479197)
chr7 (204-254)||(38550092-38550142)
chr7 (80-142)||(46437834-46437896)
chr7 (117-177)||(22211600-22211660)
chr7 (117-177)||(38472462-38472522)
chr7 (117-177)||(47384496-47384556)
chr7 (118-177)||(6605224-6605283)
chr7 (204-255)||(35691997-35692048)
chr7 (204-254)||(45360763-45360813)
chr7 (204-254)||(46438206-46438256)
chr7 (204-245)||(34775610-34775651)
chr7 (81-142)||(38549739-38549800)
chr7 (204-245)||(48851118-48851159)
chr7 (117-177)||(22155685-22155745)
chr7 (117-177)||(24226783-24226843)
chr7 (117-177)||(35691629-35691689)
chr7 (117-189)||(37791856-37791928)
chr7 (1-49)||(38549666-38549714)
chr7 (204-254)||(37114500-37114550)
chr7 (204-245)||(24227118-24227159)
chr7 (117-177)||(34775200-34775260)
chr7 (117-177)||(37114143-37114203)
chr7 (117-177)||(39857847-39857907)
chr7 (204-254)||(6604867-6604916)
chr7 (204-254)||(22155327-22155377)
chr7 (204-254)||(22211242-22211292)
chr7 (204-254)||(47384854-47384904)
chr7 (80-109)||(13036358-13036387)
chr7 (204-245)||(38472822-38472863)
chr7 (117-177)||(46437837-46437897)
[»] chr1 (47 HSPs)
chr1 (1-202)||(52642007-52642209)
chr1 (1-141)||(45045039-45045180)
chr1 (1-146)||(50554282-50554428)
chr1 (1-141)||(31236938-31237079)
chr1 (1-176)||(26223706-26223882)
chr1 (1-176)||(37345756-37345932)
chr1 (1-142)||(2870904-2871046)
chr1 (1-142)||(3011974-3012116)
chr1 (1-142)||(33599337-33599479)
chr1 (1-142)||(51894686-51894828)
chr1 (1-176)||(8168061-8168236)
chr1 (1-142)||(4854529-4854671)
chr1 (1-176)||(8169362-8169538)
chr1 (1-176)||(27089073-27089249)
chr1 (1-142)||(34776688-34776830)
chr1 (1-164)||(25276861-25277025)
chr1 (1-146)||(37087960-37088106)
chr1 (1-142)||(46582129-46582271)
chr1 (1-176)||(1443976-1444151)
chr1 (1-176)||(47011575-47011750)
chr1 (1-142)||(6816956-6817106)
chr1 (1-176)||(9120158-9120333)
chr1 (204-254)||(1443626-1443676)
chr1 (204-254)||(4854968-4855018)
chr1 (204-254)||(9120650-9120700)
chr1 (204-254)||(34777139-34777189)
chr1 (204-254)||(47012050-47012100)
chr1 (204-254)||(52642474-52642524)
chr1 (84-176)||(25276979-25277071)
chr1 (80-142)||(25277009-25277071)
chr1 (208-254)||(26224196-26224242)
chr1 (204-254)||(27088713-27088763)
chr1 (204-254)||(33599790-33599840)
chr1 (1-54)||(3369549-3369602)
chr1 (117-177)||(51894769-51894829)
chr1 (204-254)||(3012425-3012475)
chr1 (204-254)||(15105820-15105870)
chr1 (1-63)||(23577755-23577817)
chr1 (204-254)||(31237389-31237439)
chr1 (204-254)||(37087606-37087656)
chr1 (204-254)||(50554750-50554800)
chr1 (51-175)||(20944885-20945010)
chr1 (117-177)||(3012057-3012117)
chr1 (117-176)||(37087964-37088023)
chr1 (117-176)||(50554365-50554424)
chr1 (117-175)||(31237021-31237079)
chr1 (170-202)||(15106133-15106165)
[»] chr5 (39 HSPs)
chr5 (1-146)||(28813589-28813735)
chr5 (1-146)||(28821915-28822060)
chr5 (1-142)||(30464019-30464161)
chr5 (1-115)||(8541126-8541241)
chr5 (1-142)||(12738564-12738706)
chr5 (1-142)||(12801387-12801529)
chr5 (1-142)||(32134355-32134497)
chr5 (1-176)||(17577729-17577905)
chr5 (1-142)||(7269274-7269416)
chr5 (1-141)||(42471667-42471808)
chr5 (1-176)||(40782006-40782181)
chr5 (14-176)||(21842786-21842949)
chr5 (1-176)||(29620257-29620432)
chr5 (1-142)||(34328651-34328797)
chr5 (1-99)||(2853005-2853104)
chr5 (80-142)||(2181524-2181586)
chr5 (204-254)||(7268923-7268973)
chr5 (53-176)||(24539933-24540057)
chr5 (204-254)||(21842429-21842479)
chr5 (204-254)||(40781656-40781706)
chr5 (204-254)||(42472130-42472180)
chr5 (117-177)||(30464102-30464162)
chr5 (204-254)||(17575362-17575412)
chr5 (204-254)||(17576082-17576132)
chr5 (204-254)||(17577393-17577443)
chr5 (204-254)||(29620749-29620799)
chr5 (1-80)||(41493963-41494042)
chr5 (204-254)||(2181198-2181248)
chr5 (1-63)||(27077375-27077437)
chr5 (204-245)||(8540780-8540821)
chr5 (204-245)||(30464512-30464553)
chr5 (117-177)||(2181523-2181583)
chr5 (117-177)||(12738563-12738623)
chr5 (117-177)||(12801386-12801446)
chr5 (117-176)||(28813593-28813652)
chr5 (204-243)||(32134806-32134845)
chr5 (204-254)||(18624015-18624065)
chr5 (204-254)||(34328300-34328350)
chr5 (204-245)||(41494404-41494445)
[»] scaffold0345 (3 HSPs)
scaffold0345 (1-142)||(1385-1525)
scaffold0345 (204-245)||(992-1033)
scaffold0345 (117-177)||(1384-1444)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-176)||(7031-7207)
[»] scaffold0004 (2 HSPs)
scaffold0004 (24-200)||(106801-106978)
scaffold0004 (204-254)||(107234-107284)
[»] scaffold1712 (1 HSPs)
scaffold1712 (1-175)||(1101-1276)
[»] scaffold0081 (1 HSPs)
scaffold0081 (1-176)||(54053-54228)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-75)||(63617-63691)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 48645379 - 48645628
Alignment:
Q  6 ttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttacagaaa 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||    
T  48645379 ttggtctgttaacgaaggtgacgtgtattgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttacagaaa 48645478  T
Q  105 attgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctccttt 204  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  48645479 attgtcaaggatcaaattgattgattttcagaaaattgccaaggaacaaattgattgattttcagaaaattgcaaaatttccaacggctctttctccttt 48645578  T
Q  205 tcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  48645579 tcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 48645628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 49524703 - 49524557
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  49524703 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttaccaggcttaccacgtcatatgtcacgcaagcagggaccaaattgattgatttac 49524604  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    ||||||||| |||||| |||||| || |||||| |||||||||||||    
T  49524603 agaaaattgtcaaggaccaaattgatggattttgagaaaattgtcaa 49524557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 20493946 - 20494092
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  20493946 ttaagttggtgtgttaacggaggtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 20494045  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    | ||||||| |||||| |||||| || ||||||||||||||||||||    
T  20494046 ataaaattggcaaggaccaaattgatggattttcagaaaattgtcaa 20494092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 54387852 - 54387711
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||| ||| || ||||||| | || ||| ||||||||||||    
T  54387852 ttaagttggtctgttaacggaggtga-gtgtaccgttaacctcttacaaggcttaccacgtcaaatgccacgcaagcagggactaaactgattgatttac 54387754  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  54387753 agaaaattgccaaggaccaaattgattgattttcagaaaattg 54387711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 35401868 - 35402010
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||  |||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  35401868 ttaagctggtctgttaacggaggtgacgtgtaacgttaacctcttacaaaccttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 35401967  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||| | |||||| || |||||||| |||||||    
T  35401968 agaaaattgccaagcaccaaattgatggattttcataaaattg 35402010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39345683 - 39345805
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| | | ||| ||  ||||||  ||||||||||||||||||||    
T  39345683 ttaagttggtatgttaacggaggtgacgtgtaacgttaacctcttacaaggcttaccacataagatgccacacaagcagggaccaaattgattgatttac 39345782  T
Q  100 agaaaattgccaaggatcaaatt 122  Q
    |||||||||||||||||||||||    
T  39345783 agaaaattgccaaggatcaaatt 39345805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 43507286 - 43507462
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||| |||||||||||||||||||||   |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  43507286 ttaagttggactgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgtcacgcaagcagggaccaaactgattgatttac 43507385  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  43507386 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 43507462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 51013856 - 51013714
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||| ||||||    
T  51013856 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattaatttac 51013757  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || |||||| |||||||||    
T  51013756 acaaaatttccaaggaccaaattgatggatttttagaaaattg 51013714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 320870 - 320694
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||| |||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  320870 ttaagttggcctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 320771  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  320770 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 320694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 33265980 - 33265804
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||| |||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  33265980 ttaagttagtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 33265881  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  33265880 ataaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 33265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 43508623 - 43508447
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||| ||||||||| |||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  43508623 ttaagttggcctgttaacgaaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 43508524  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  43508523 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 43508447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 43521079 - 43520903
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||| |||||||||| |||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  43521079 ttaagttgttctgttaacgtaggtgacgtgttacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 43520980  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | ||||||  |||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| ||| |||||||    
T  43520979 acaaaattttcaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcataaaattg 43520903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 835012 - 834837
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| || |||||||||| ||| || |||||||  |||||||||||| |||||||    
T  835012 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaccacgtcagatgccacgcaagcagggaccaaattgatggatttac 834913  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| ||||||||||    
T  834912 acaaaatttcgaaggactaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaatt 834837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5439617 - 5439442
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| || |||||||||| ||| || |||||||  |||||||||||| |||||||    
T  5439617 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaccacgtcagatgccacgcaagcagggaccaaattgatggatttac 5439518  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| ||||||||||    
T  5439517 acaaaatttcgaaggactaaattgatggatttacacaaaatttccaaggatcaaattgatggattttcagaaaatt 5439442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 11641959 - 11641860
Alignment:
Q  101 gaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctc 200  Q
    |||||||  ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||| |||||||||    
T  11641959 gaaaattatcaaggatcaaattgattgatttacagaaaattgtcaaggaccaaattgattgatttacaggaaattgcaaaatttccaacgtctctttctc 11641860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33264501 - 33264678
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || | |||||| ||||||| ||||||||||||    
T  33264501 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgtaagcatggaccaaactgattgatttac 33264600  T
Q  100 agaaaa-ttgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
      |||| || | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  33264601 gcaaaattttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 33264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 319392 - 319568
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||| ||||||||||||   |||||||||| ||||  |||||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  319392 ttaagttggtctgttaacagaggtgacgtgtcacgttaacctctgacaaaacttaccacgtcagatgtcacgcaagcagggaccaaactgattgatttac 319491  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| ||  |||| || ||||||  |||||| |||||||||  ||| |||||||||||    
T  319492 acaaaatttcgaaggacgaaattgatgtatttacacaaaatttccaaggaccaaattgatgaattttcagaaaattg 319568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4173710 - 4173534
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||| |||||||||||||||||||||   |||||| ||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  4173710 ttaagttggcctgttaacggaggtgacgtgtcacgttaacatctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 4173611  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| | |||||||||    
T  4173610 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggatttttagaaaattg 4173534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 833342 - 833517
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| || |||||||||| ||| || |||||||  ||||||||||||  ||||||    
T  833342 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaccacgtcagatgccacgcaagcagggaccaaattgatgaatttac 833441  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| ||||||||||    
T  833442 acaaaatttcgaaggactaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaatt 833517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5437930 - 5438105
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| || || ||||||| ||| || ||||||| | ||||||||||| |||||||    
T  5437930 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaacacgtcagatgccacgcaagcagggaccaaattgatggatttac 5438029  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| ||||||||||    
T  5438030 acaaaatttcgaaggactaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaatt 5438105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 42982422 - 42982313
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  ||| |||| ||||||| |||||||||||| ||| ||  ||||||  |||||||||||||||||||     
T  42982422 ttaagttggtgtgttaacggaggtgacgtgtaacgttgaccttttacaagccttaccacgtcagatgccacacaagcagggaccaaattgattgatttag 42982323  T
Q  100 agaaaattgc 109  Q
    ||||||||||    
T  42982322 agaaaattgc 42982313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 54387763 - 54387686
Alignment:
Q  124 attgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctcct 202  Q
    |||||||| |||||||||| |||||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  54387763 attgatttacagaaaattgccaaggaccaaattgattgattttcagaaaattgcaaaa-ttcccacgactctttctcct 54387686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11254238 - 11254345
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| ||||||||||||||| |||||  |||| | |||||||||||||||||||||| ||| ||||||||||  |||||||||||| ||||| |    
T  11254238 ttaagttggtttgttaacggaggtgatgtgtaacgttatc-tcttacaaggcttaccacgtcagatgccatgcaagcagggaccaaattgatggattttc 11254336  T
Q  100 agaaaattg 108  Q
    | |||||||    
T  11254337 ataaaattg 11254345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 833804 - 833854
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  833804 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 833854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 5439155 - 5439105
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  5439155 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 5439105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 4172311 - 4172407
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    ||||||| ||||||||||||| |||||| | |||||  ||||| || ||||| || |||||| ||||||| ||||||||| |||| |||||||||||    
T  4172311 gaccaaactgattgatttacacaaaatttcgaaggacgaaattgatggatttacacaaaattttcaaggaccaaattgatggattttcagaaaattg 4172407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 11641943 - 11641884
Alignment:
Q  83 caaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||||||||||||| |||||| |||||| |||||||| ||| ||||||    
T  11641943 caaattgattgatttacagaaaattgtcaaggaccaaattgattgatttacaggaaattg 11641884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4169805 - 4169867
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtca 63  Q
    ||||||||||||||||| |||||||||||||   |||||||||| |||| |||||||||||||    
T  4169805 ttaagttggtctgttaatggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtca 4169867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 42982022 - 42981972
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  42982022 ttcaagctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 42981972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 51013404 - 51013354
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||||||||||||||| |||||||||||||| || |||||    
T  51013404 ttcaagctctatgtacaatgatgatgtaagagagcttcaatgttggtgtcc 51013354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 49524620 - 49524561
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||||| ||||||||||||||||| ||||||||| |||| | |||||||||    
T  49524620 caaattgattgatttacagaaaattgtcaaggaccaaattgatggattttgagaaaattg 49524561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 11254628 - 11254678
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||| ||||||||||||||||||| ||||||||||||||||| || |||||    
T  11254628 ttcaggctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 11254678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 41760297 - 41760347
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||    
T  41760297 ttcaacctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 41760347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 54387421 - 54387371
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||| ||| |||||||||||||||||||||| || |||||    
T  54387421 ttcaagctctatgtataataatgatgtgagagagcttcaatgttggtgtcc 54387371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 20494029 - 20494088
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||||| || ||||||| |||||| ||||||||| |||| |||||||||||    
T  20494029 caaattgattgatttacataaaattggcaaggaccaaattgatggattttcagaaaattg 20494088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2691492 - 2691554
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtca 63  Q
    ||||||||| ||||||| |||||||| ||| || ||||| | |||||||| ||||||||||||    
T  2691492 ttaagttggcctgttaagggaggtgatgtgcatcgttaatcgcttacaagacttaccacgtca 2691554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 2691606 - 2691635
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgc 109  Q
    ||||||||||||||||||||||||||||||    
T  2691606 gaccaaattgattgatttacagaaaattgc 2691635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 48829475 - 48829722
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||| ||||||| | |||||||||||||||||||    
T  48829475 ttaagttggtctgttaacggaggtgaagtgtactgttaacctcttacaaggcttaccacgtcagaggtcacgcaagcaaggaccaaattgattgatttac 48829574  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactc--ttt 197  Q
    ||||||||| |||||| |||||| | ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||  |||    
T  48829575 agaaaattgtcaaggaccaaattgaatgatttttagaaaattgtcaaggaacaaattgattgattttcagaaaattgcaaaattcccaacggctcttttt 48829674  T
Q  198 ctccttttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  48829675 ctcctcttcaagctctatgtacaatgatgatgtgaaagagcttcaatg 48829722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 51686362 - 51686162
Alignment:
Q  3 aagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttacag 101  Q
    |||||||| |||||||| ||||||||||||  ||||||||||||||| ||||||||||||| |||||| ||||||| | |||||||||||||||||||||    
T  51686362 aagttggtatgttaacgaaggtgacgtgtaccgttaacctcttacaaagcttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttacag 51686263  T
Q  102 aaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctcc 201  Q
    |||||||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||    
T  51686262 aaaattgccaaggaccaaattgatcgattttcagaaaattgccaaggaacaaattgattgattttcagaaaattgcaaaattcccaactaccctttctcc 51686163  T
Q  202 t 202  Q
    |    
T  51686162 t 51686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 611192 - 610992
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| | ||| || ||||||| | | |||||||||||||||||    
T  611192 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaggtttaccacgttagatgccacgcaagcagggatcaaattgattgatttac 611093  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
    ||||||||||||||||  ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  |||||| |||||||    
T  611092 agaaaattgccaaggactaaattgatggattttcagaaaattgtcaaggaccaaattgattgattttcagaaaattgcaaaattctcaacgattctttct 610993  T
Q  200 c 200  Q
    |    
T  610992 c 610992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 46114075 - 46113873
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||| |||| ||| || |||||||  ||||||||||||||||||||    
T  46114075 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaggtttaccatgtcagatgccacgcaagcagagaccaaattgattgatttac 46113976  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
    ||||||||| ||||||  ||||| || ||||||||||| |||| |||||| |||||||||||||| ||||||||||| ||||||  ||||||||||||||    
T  46113975 agaaaattgtcaaggactaaattgatggattttcagaatattgccaaggaccaaattgattgattttcagaaaattgtaaaattctcaacgactctttct 46113876  T
Q  200 cct 202  Q
    |||    
T  46113875 cct 46113873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 17516943 - 17516801
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  17516943 ttaagttggtctattaacggaggtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 17516844  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| |||||| |||||| || ||||||||||||||||    
T  17516843 agaaaattgtcaaggaccaaattgatggattttcagaaaattg 17516801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 21350575 - 21350433
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||    
T  21350575 ttaagttggtatgttaacggaggtgtcgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttac 21350476  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||| | |||||| ||  |||||||||||||||    
T  21350475 agaaaattgccaagaaccaaattgatgaattttcagaaaattg 21350433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 54412517 - 54412371
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||| |||||| ||||||||||||| ||| || ||||||| | |||||||||||||||||||    
T  54412517 ttaagttggtgtgttaacggaggtgacgtgtaacgttaaccttttacaatgcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 54412418  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    |||||||||||||||| |||||| || |||||||| |||||||||||    
T  54412417 agaaaattgccaaggaccaaattgatggattttcataaaattgtcaa 54412371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 2661878 - 2661702
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||| |||||||||||||  |||||||||| |||| ||||||||||||||||| ||||||||||  ||||||| | ||||||||||    
T  2661878 ttaagttggtctgttaacagaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcatatgccatgcaagcagggaccaaactaattgatttac 2661779  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  2661778 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 2661702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 2378953 - 2378811
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| ||||||||||||||||||||| ||||||| |||||||  ||||||||||||| |||||| |||||||  |||||||||||||||||||     
T  2378953 ttaagttggtttgttaacggaggtgacgtgtaatgttaacatcttacatagcttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttaa 2378854  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||||||| || |||||| || ||||||||||||||||    
T  2378853 agaaaattgccaatgaccaaattgatggattttcagaaaattg 2378811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27897269 - 27897391
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||| ||||| |  ||||||||||||||||||||    
T  27897269 ttaagttggtttgttaacggaggtgacgtgtaacgttaacctcttacatggcttaccacgtcagatgtcacgcaagtagggaccaaattgattgatttac 27897368  T
Q  100 agaaaattgccaaggatcaaatt 122  Q
    |||||||||||||||| ||||||    
T  27897369 agaaaattgccaaggaccaaatt 27897391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 42282443 - 42282301
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| ||||||| |||||||| ||||  ||||||||||||||||| ||||||||||| ||| || ||||||| | |||||||||||||||||||    
T  42282443 ttaagttggtatgttaaccgaggtgacatgtaccgttaacctcttacaaggtttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 42282344  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| |||| |||| |||||||||    
T  42282343 agaaaattgccaaggaccaaattgattgtttttaagaaaattg 42282301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 53092742 - 53092918
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| | ||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  53092742 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagtttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 53092841  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| |||| || |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  53092842 acaaaatttccaatgaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 53092918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 53094243 - 53094067
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| |||||| ||||||| |||||||| ||||||||| ||    
T  53094243 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgtcacgcaagcagtgaccaaactgattgattcac 53094144  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  53094143 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 53094067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 7883447 - 7883589
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  7883447 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 7883546  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || |||||||| |||||||    
T  7883547 acaaaatttccaaggaccaaattgatggattttcaaaaaattg 7883589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 23291689 - 23291830
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||| |||||||| | |||||||||||||  ||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||| ||||||    
T  23291689 ttaagttagtctgtta-cagaggtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagggaccaaattgattaatttac 23291787  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| | |||| |||||| || ||||||||||||||||    
T  23291788 agaaaattgtcgaggaccaaattgatggattttcagaaaattg 23291830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 35903944 - 35904086
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||| ||| ||| || |||||||  ||||||| ||||||||||||    
T  35903944 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacatcagatgccacgcaagcagggaccaaactgattgatttac 35904043  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || ||||||||||||||||    
T  35904044 acaaaatttccaaggaccaaattgatggattttcagaaaattg 35904086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 3150371 - 3150547
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    ||||||||||||||||||||| ||||||||||  |||||||||| |||| | ||||||||||| ||| || ||||||   ||||||| ||||||||||||    
T  3150371 ttaagttggtctgttaacggatgtgacgtgtaacgttaacctctgacaaagattaccacgtcagatgccacgcaagcggagaccaaactgattgatttac 3150470  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  3150471 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 3150547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 46310406 - 46310230
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  46310406 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 46310307  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  46310306 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 46310230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 46611273 - 46611097
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagc-atgaccaaattgattgatttac 99  Q
    ||||||||| |||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| ||||||||| | ||||||| ||||||||||||    
T  46611273 ttaagttggcctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccatgcaagcaaggaccaaactgattgatttac 46611174  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || |||||| ||||||| ||||||||| |||| | |||||||||    
T  46611173 acaaaatttcgaaggacgaaattgatggatttacacaaaattttcaaggaccaaattgatggatttttagaaaattg 46611097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 30598456 - 30598598
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  ||||| |||||||||||||| |||||||| ||  || |||||||  |||||||| |||||||||||    
T  30598456 ttaagttggtatgttaacggaggtgacgtgtaacgttaaactcttacaaggcttgccacgtcagataccacgcaagcagagaccaaatagattgatttac 30598555  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| ||| || |||||| || ||||||||||||||||    
T  30598556 agaaaattgtcaatgaccaaattgatggattttcagaaaattg 30598598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 41979322 - 41979180
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  41979322 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 41979223  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | ||||||  | |||| |||||| || ||||||||||||||||    
T  41979222 acaaaattttcgaggaccaaattgatggattttcagaaaattg 41979180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 43767013 - 43766895
Alignment:
Q  5 gttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttacagaa 103  Q
    |||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||| |||||| |||||||  |||||||||||||||||||| |||    
T  43767013 gttggtctgttaacggaggtgatgtgtaacgttaacctcttataaggcttaccacgtcaaatgtcacgcaagcagggaccaaattgattgatttacggaa 43766914  T
Q  104 aattgccaaggatcaaatt 122  Q
    ||||| |||||| ||||||    
T  43766913 aattgtcaaggaccaaatt 43766895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 38193480 - 38193304
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||| |||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  38193480 ttaagttggtctgttaacggaggtgacatgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 38193381  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  38193380 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 38193304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 44795860 - 44795684
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||| ||||||||||||||  |||||||||| |||| ||||||||||| | ||| || |||||||  || |||| ||||||||||||    
T  44795860 ttaagttggtctgttaatggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtaagatgccacgcaagcagggatcaaactgattgatttac 44795761  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| ||  |||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  44795760 acaaaatttccaaggaccaaattgatgaatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 44795684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 46609268 - 46609444
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||| |||||||||||||   |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  46609268 ttaagttggtttgttaatggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgtcacgcaagcagggaccaaactgattgatttac 46609367  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  46609368 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 46609444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 53187861 - 53188037
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    |||||||| |||| ||||||||||||||||||  |||||||||| |||| | ||||||||||| ||| || ||||||   ||||||| ||||||||||||    
T  53187861 ttaagttgatctggtaacggaggtgacgtgtaacgttaacctctgacaaagattaccacgtcagatgccacgcaagcggagaccaaactgattgatttac 53187960  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  53187961 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 53188037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44268100 - 44268242
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  ||||||||| ||||||| |||||||||||  || || | |||||  |||||||||| |||||||||    
T  44268100 ttaagttggtatgttaacggaggtgacgtgtaacgttaacctcctacaaggtttaccacgtcagttgccacgtaagcagggaccaaattggttgatttac 44268199  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| || || ||| |||||||||    
T  44268200 agaaaattgccaaggaccaaattgatggacttttagaaaattg 44268242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 46308926 - 46309102
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||| |||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  46308926 ttaagttggcctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 46309025  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| | |||||||||    
T  46309026 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggatttttagaaaattg 46309102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 28626530 - 28626705
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| || |||||||||| ||| || |||||||  |||||||||||| |||||||    
T  28626530 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaccacgtcagatgccacgcaagcagggaccaaattgatggatttac 28626629  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| ||||||||||    
T  28626630 acaaaatttcgaaggactaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaatt 28626705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 54900044 - 54899902
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||| ||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  54900044 ttaagttggtatgttaacggaggtgacgtgtaacgttaacgtctgacaaagcttaccacgtcaaatgccacgcaagcagagaccaaactgattgatttac 54899945  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | ||||||  |||||| |||||| || |||||| |||||||||    
T  54899944 acaaaattttcaaggaccaaattgatggatttttagaaaattg 54899902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 38192014 - 38192178
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||| |||   |||||||||| |||| ||||||||||            |||||| |||||||| ||||||||||||    
T  38192014 ttaagttggtctgttaacggaggtgacatgtcacgttaacctctgacaaagcttaccacg------------caagcagtgaccaaactgattgatttac 38192101  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  |||||||| ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  38192102 acaaaatttcgaaggacgaaattaatggatttacataaaatttccaaggaccaaattgatggattttcagaaaattg 38192178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 42282360 - 42282277
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctc 200  Q
    |||||| |||||||| |||||||||| |||||| ||||||||||| || | |||||||||||||||| |||||| |||||||||    
T  42282360 caaattgattgatttacagaaaattgccaaggaccaaattgattgtttttaagaaaattgcaaaattcccaacggctctttctc 42282277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 41978870 - 41978820
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  41978870 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 41978820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 42282019 - 42281969
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  42282019 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 42281969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 51685897 - 51685847
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  51685897 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 51685847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 53188347 - 53188397
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  53188347 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 53188397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 17516860 - 17516800
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||    
T  17516860 caaattgattgatttacagaaaattgtcaaggaccaaattgatggattttcagaaaattgc 17516800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 7883896 - 7883946
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||||    
T  7883896 ttcaagctctatgtacaatgttgatgtgagagagcttcaatgttggtgtcc 7883946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 27897762 - 27897812
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  27897762 ttcaagctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 27897812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 35904396 - 35904446
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||    
T  35904396 ttcaagctccatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 35904446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 21350141 - 21350091
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||| | ||||||||||||||||| || |||||    
T  21350141 ttcaagctctatgtacaatgataaggtgagagagcttcaatgttggtgtcc 21350091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 23292141 - 23292191
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| |||||| |||||||||| || |||||    
T  23292141 ttcaagctctatgtacaatgatgaggtgagaaagcttcaatgttggtgtcc 23292191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 30598546 - 30598599
Alignment:
Q  124 attgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||||| |||||||||||||| || ||||||||| |||| ||||||||||||    
T  30598546 attgatttacagaaaattgtcaatgaccaaattgatggattttcagaaaattgc 30598599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 2378804 - 2378764
Alignment:
Q  106 ttgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  2378804 ttgccaaggatcaaattgatggattttcagaaaattgtcaa 2378764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 23291771 - 23291831
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| ||| |||| |||||||||||| |||| ||||||||| |||| ||||||||||||    
T  23291771 caaattgattaatttacagaaaattgtcgaggaccaaattgatggattttcagaaaattgc 23291831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 2378460 - 2378410
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||| ||| |||| ||||||||||||||||| || |||||    
T  2378460 ttcaagctctatgtaaaataatgaggtgagagagcttcaatgttggtgtcc 2378410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 43766568 - 43766518
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||  ||||||| || |||||    
T  43766568 ttcaagctctatgtacaatgatgaggtgagagaagttcaatgttggtgtcc 43766518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 44274915 - 44274965
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||| |||||||||||||||||| |||||| |||||||||| || |||||    
T  44274915 ttcaatctctatgtacaatgatgaggtgagaaagcttcaatgttggtgtcc 44274965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 24846093 - 24846052
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||||||||||| |||| |||||| |||||||||    
T  24846093 ttcaagctctatgtacaatggtgatatgagagtgcttcaatg 24846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 30598907 - 30598947
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  30598907 ttcaagctctatgtacaatgatgaggtgagaga-cttcaatg 30598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 46199166 - 46199125
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||| ||||||||||| || ||||||||||||||    
T  46199166 ttcaagctctatatacaatgatgaggtaagagagcttcaatg 46199125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 2378870 - 2378810
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| ||||||||  ||||||||| ||| || ||||||||| |||| ||||||||||||    
T  2378870 caaattgattgatttaaagaaaattgccaatgaccaaattgatggattttcagaaaattgc 2378810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 21350492 - 21350432
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| |||||||||| |||| | |||||||||  ||| ||||||||||||    
T  21350492 caaattgattgatttacagaaaattgccaagaaccaaattgatgaattttcagaaaattgc 21350432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 10569884 - 10569635
Alignment:
Q  6 ttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttacagaaa 104  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||| ||| || ||||||| | | ||||||||||||||||||||||    
T  10569884 ttggtctgttaacggaggtgacgtgtactgttaacctcttacgtggcttaccatgtcagatgccacgcaagcagggatcaaattgattgatttacagaaa 10569785  T
Q  105 attgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctccttt 204  Q
    |||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |    
T  10569784 attgccaaagaccaaattgattgattttcagaaaattgccaaggaacaaattgattgattttcagaaaattgtaaaattcccaacgactctttctcctct 10569685  T
Q  205 tcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  10569684 tcaagctctatgtacaatgatgatgtgagcgagcttcaatgttggtgtcc 10569635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 21068744 - 21068944
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||| | ||||||||||||||||||     
T  21068744 ttaagttggcctgttaacggaggtgacgtgtactgttaatctcttacaaggcttaccacgtcagatatcacgcaagcaaggaccaaattgattgatttat 21068843  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  21068844 agaaaattgccaaggaccaaattgattgattttcagaaaattgtcaagaatcaaattgattgattttcacaaaattgaaaaatttccaacgactctttct 21068943  T
Q  200 c 200  Q
    |    
T  21068944 c 21068944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 21045429 - 21045629
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||| | ||| ||| |||||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||| | ||||||||||||||||||     
T  21045429 ttaagttagcctggtaatggaggtgacgtgtactgttaatctcttacaaggcttaccacgtcagatatcacgcaagcagggaccaaattgattgatttat 21045528  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
      ||||||| |||||| |||||| |||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  21045529 taaaaattgtcaaggaccaaattgattgattttcagaaaattgtcaagaatcaaattgattgattttcataaaattgcaaaatttccaacgactctttct 21045628  T
Q  200 c 200  Q
    |    
T  21045629 c 21045629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 7051215 - 7051073
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||    
T  7051215 ttaagttggtctgttaacggaggtgacgtgtactgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttac 7051116  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  7051115 agaaaattgccaaggaacaaattgattgattttcagaaaattg 7051073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 9400005 - 9399851
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| | ||| || ||||||| | ||| |||||||||||||||    
T  9400005 ttaagttggtctgttaacagaggtgacgtgtaacgttaacctcttacaaggcttaccacgttagatgccacgcaagcagggacctaattgattgatttac 9399906  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaa 154  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||    
T  9399905 agaaaattgtcaaggatcaaattgattgattttcagaaaattgccaaggaccaaa 9399851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 6902868 - 6902727
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| |||||| |||||||  ||||||||||||||||||||    
T  6902868 ttaagttggtctgttaacggaggtgacgtgtaccgttaacctcttacaagacttaccacgtcagatgtcacgcaagcagagaccaaattgattgatttac 6902769  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaatt 141  Q
    ||||||||| ||||||  ||||| ||||||||||||||||||    
T  6902768 agaaaattgtcaaggactaaattgattgattttcagaaaatt 6902727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 7051132 - 7050995
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctccttttcaagctctatg 216  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| || |||||||| |||||||||||||    
T  7051132 caaattgattgatttacagaaaattgccaaggaacaaattgattgattttcagaaaattgcaaaattcccaacggctatttctcctcttcaagctctatg 7051033  T
Q  217 tacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    || |||||||||||||||||||||||||| || |||||    
T  7051032 taaaatgatgatgtgagagagcttcaatgttggtgtcc 7050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 21091213 - 21091355
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||||     
T  21091213 ttaagttggcctgttaacggaggtgacgtgtactgttaatctcttacaaggcttaccacgtcagatgtcacgcaagcatggactaaattgattgatttat 21091312  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| |||||| |||||| ||||||||||| |||||||    
T  21091313 agaaaattgtcaaggaccaaattgattgattttcataaaattg 21091355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 32518467 - 32518291
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  32518467 ttaagttggtctgttaacggaggtgacgtgtaatgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 32518368  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  32518367 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 32518291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 11357164 - 11357024
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    |||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||    
T  11357164 ttaagttggtctgttaacgga--tgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagagaccaaattgattgatttac 11357067  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| || || |||||||||||||    
T  11357066 agaaaattgccaaggaccaaattgatggaatttcagaaaattg 11357024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 20525304 - 20525158
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||||| ||| ||  |||||| | |||||||||||||||||||    
T  20525304 ttaagttggtctgttaacggaggtgacatgcaacgttaacctcttacaaggcttaccacgtcagatgccacacaagcagggaccaaattgattgatttac 20525205  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    |||| |||||||| || |||||| || ||||||||||||||||||||    
T  20525204 agaacattgccaatgaccaaattgatggattttcagaaaattgtcaa 20525158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 18645074 - 18644898
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||| ||||  |||||||||| ||||  |||||||||| | |||||| |||||||  ||||||| |||| |||||||    
T  18645074 ttaagttggtctgttaacggaggtgacatgtaacgttaacctctgacaaaacttaccacgttagatgtcacgcaagcagggaccaaactgatcgatttac 18644975  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| ||| |||||||    
T  18644974 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcataaaattg 18644898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33267180 - 33267288
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  33267180 ttaaattggcctgttaacggaggtgacgtgtagtgttaacctcttacaaggcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 33267279  T
Q  100 agaaaattg 108  Q
    | |||||||    
T  33267280 acaaaattg 33267288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 32437246 - 32437422
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| ||||||||||| |||||||||  |||||||||| |||| ||||||||||||| ||  || |||||||  ||||||| ||||||||||||    
T  32437246 ttaagttggtatgttaacggagatgacgtgtaacgttaacctctgacaaagcttaccacgtcagataccacgcaagcagggaccaaactgattgatttac 32437345  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | || ||| || |||| |||||| || ||||| || |||||| ||| ||| ||||||||| |||| |||||||||||    
T  32437346 acaacatttccgaggaccaaattgatggatttacacaaaattttcacggaccaaattgatggattttcagaaaattg 32437422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 3480627 - 3480452
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   ||||| |||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  3480627 ttaatttggtctgttaacggaggtgacgtgtcacgttaatctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 3480528  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  3480527 acaaaatttcgaaggacgaaattgatggatttacacaaaatt-ccaaggaccaaattgatggattttcagaaaattg 3480452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13610808 - 13610941
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatgaccaaattgattgatttaca 100  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||| || |||| |   ||||     |||||||||||    
T  13610808 ttaagttggtctgttaacggaggtgacgtgtaacgttaaccccttacaaggcttaccacgtcagatgacacgcaaac---acca-----attgatttaca 13610899  T
Q  101 gaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
     |||||| ||||||| |||||| || ||||||||||||||||    
T  13610900 aaaaatttccaaggaccaaattgatggattttcagaaaattg 13610941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 33276925 - 33277053
Alignment:
Q  12 tgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatgaccaaattgattgatttacagaaaattgcca 111  Q
    |||||||||||||||| |||| |||||| |||||| ||| || ||||||||| |||||| |   ||  ||||||||||||||||||| |||||||||  |    
T  33276925 tgttaacggaggtgacatgtactgttaatctcttataagactgaccacgtcagatgtcacgtttgc--gaccaaattgattgatttatagaaaattgtaa 33277022  T
Q  112 aggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||||| |||||||||||||||||||    
T  33277023 aggatcaaattgattgattttcagaaaattg 33277053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 32454367 - 32454542
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  32454367 ttaatttggtctgttaacggaggtgacgtgtcacgttaacctctaacaaagcttaccacgtcagatgccacgcaagcagagaccaaactgattgatttac 32454466  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||  || ||||| || ||||||  |||||| |||||||||  ||| |||||||||||    
T  32454467 acaaaatttcgaaggacgaaatcgatagatttacacaaaatt-ccaaggaccaaattgatgaattttcagaaaattg 32454542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 6902785 - 6902703
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
    |||||| |||||||| |||||||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  6902785 caaattgattgatttacagaaaattgtcaaggactaaattgattgattttcagaaaattacaaaattcccaacgactctttct 6902703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 21091297 - 21091379
Alignment:
Q  118 aaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctc 200  Q
    ||||| ||||||||  |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  21091297 aaattgattgatttatagaaaattgtcaaggaccaaattgattgattttcataaaattgcaaaatttccaacggctctttctc 21091379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 7371294 - 7371406
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||| ||||||||||||||   ||||||||||| ||| |||||||||||| ||  || |||||||  |||||||||||| ||||| |    
T  7371294 ttaagttggtctgttaaaggaggtgacgtgtaacattaacctcttataagacttaccacgtcagataccacgcaagcagggaccaaattgatggattttc 7371393  T
Q  100 agaaaattgccaa 112  Q
     ||||||||||||    
T  7371394 cgaaaattgccaa 7371406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 33276994 - 33277066
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaac 189  Q
    |||||| ||||||||  |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  33276994 caaattgattgatttatagaaaattgtaaaggatcaaattgattgattttcagaaaattgcaaaatttccaac 33277066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 18644698 - 18644650
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgt 252  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18644698 ttcaagctccatgtacaatgatgatgtgagagagcttcaatgatgatgt 18644650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 6902436 - 6902386
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  6902436 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 6902386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 9399920 - 9399862
Alignment:
Q  119 aattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  9399920 aattgattgatttacagaaaattgtcaaggatcaaattgattgattttcagaaaattgc 9399862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 32454859 - 32454909
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  32454859 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 32454909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 32437729 - 32437779
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||||||||||||||||||| |||||||||| || |||||    
T  32437729 ttcaagctctatgtacaatgatgatgtgagaaagcttcaatgttgttgtcc 32437779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 33267595 - 33267645
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||| ||||||||||||||||||||||||||| || |||||    
T  33267595 ttcaagctctatgtgcaatgatgatgtgagagagcttcaatgttggtgtcc 33267645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 11356672 - 11356631
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  11356672 ttcaagctctatgtacaatgatgaggtgagagagcttcaatg 11356631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 14337785 - 14337861
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca 78  Q
    ||||||||| |||||||| |||||||| |||| | |||||||||||||| |||||||| |||| |||||| |||||||    
T  14337785 ttaagttggcctgttaacagaggtgacatgtactattaacctcttacaa-gcttaccatgtcagatgtcacgcaagca 14337861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 7371681 - 7371731
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||| ||||||||||||||| ||||||||||||||||| || |||||    
T  7371681 ttcaagctatatgtacaatgatgaggtgagagagcttcaatgctggtgtcc 7371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 9399595 - 9399545
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||| ||| ||||||||||||||||||||||||||| || |||||    
T  9399595 ttcaagctctctgttcaatgatgatgtgagagagcttcaatgttggtgtcc 9399545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 20524854 - 20524804
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| || |||||||||||||| || |||||    
T  20524854 ttcaagctctatgtacaatgatgaggttagagagcttcaatgttggtgtcc 20524804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 11357083 - 11357023
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| |||||||||| |||||| ||||||||| || | ||||||||||||    
T  11357083 caaattgattgatttacagaaaattgccaaggaccaaattgatggaatttcagaaaattgc 11357023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 14337898 - 14337926
Alignment:
Q  80 gaccaaattgattgatttacagaaaattg 108  Q
    |||||||||||||||||||||||||||||    
T  14337898 gaccaaattgattgatttacagaaaattg 14337926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 19581533 - 19581778
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||| || |||||||||||||||| |||| | ||||| |||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  19581533 ttaagtttgtatgttaacggaggtgacatgtactattaacttcttacaaggcttaccacgtcaaatgtcacgcaagcagggaccaaattgattgatttac 19581632  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||  ||||| ||||||||    
T  19581633 agaaaattgccaaggaccaaattgattgattttcagaaaattgccaaggaccaaatttattgattttcagaaaattgcaaaattcacaacggctctttct 19581732  T
Q  200 ccttttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||    
T  19581733 cctcttcaagctctatgtacaatgatgatgtgagagagcttcaatg 19581778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 39456750 - 39456608
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||     
T  39456750 ttaagttggtctgttaacggaggtgacgtgtaacattaacctcttacaaggcttaccacgtcatatgtcacgcaagcagggaccaaattgattgatttat 39456651  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| ||||||  ||||| || ||||||||||||||||    
T  39456650 agaaaattgtcaaggactaaattgatggattttcagaaaattg 39456608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 42517676 - 42517818
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  42517676 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcatacaaggcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 42517775  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| |||||| |||||| || ||||||||||||||||    
T  42517776 agaaaattgtcaaggagcaaattgatggattttcagaaaattg 42517818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 16376855 - 16377001
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||||| ||||| ||||| || | ||  |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  16376855 ttaagttggtctattaacagaggtaacatttaacgttaacctcttacaaggcttaccacgtcatatgtcacgcaagcagggaccaaattgattgatttac 16376954  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    ||||||||| |||||| |||||| || ||||||||||||||||||||    
T  16376955 agaaaattgtcaaggaccaaattgatggattttcagaaaattgtcaa 16377001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 19906801 - 19906947
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||| ||| || |||| || | |||||||||||||||||||    
T  19906801 ttaagttggtctgttaaccgaggtgacgtgtaacgttaacctcttacatggcttaccacgtcagatgccacgcaaacagggaccaaattgattgatttac 19906900  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    | |||||||||||||| |||||| || ||||||||||||||||||||    
T  19906901 ataaaattgccaaggaccaaattgatggattttcagaaaattgtcaa 19906947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 6799377 - 6799231
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| || ||| || ||||| |  |||||| ||||||||||||     
T  6799377 ttaagttggtctgttaacggtggtgacgtgtaacgttaacctcttacaaggcttaccacgccagatgccacgcaagtagggaccaagttgattgatttag 6799278  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    |||||||||||||||| |||||| || |||||||| |||||||||||    
T  6799277 agaaaattgccaaggaccaaattgatggattttcaaaaaattgtcaa 6799231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 39663273 - 39663413
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||| |||||||  || |||||||||||||||||    
T  39663273 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacatggcttaccacgtcagatgtcacgcaagcagggatcaaattgattgatttac 39663372  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
      | |||||||||||| |||||| || |||||||| |||||||    
T  39663373 --ataattgccaaggaccaaattgatggattttcataaaattg 39663413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 40561848 - 40561706
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  40561848 ttaagttggtttgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 40561749  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | || ||| ||||||| |||||| || ||||||||||||||||    
T  40561748 acaacatttccaaggaccaaattgatggattttcagaaaattg 40561706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 16764574 - 16764406
Alignment:
Q  9 gtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttacagaaaatt 107  Q
    ||||||||||||||||||||||||  |||||||||| |||| |||||||| |||| |||||| |||||||  ||||||| ||||||||||||| ||||||    
T  16764574 gtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccatgtcagatgtcacgcaagcagagaccaaactgattgatttacacaaaatt 16764475  T
Q  108 gccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
     ||||||| |||||| || ||||| || ||||||   ||||| ||||||||| |||| |||||||||||    
T  16764474 tccaaggaccaaattgatggatttacacaaaatttctaaggaccaaattgatggattttcagaaaattg 16764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 24205720 - 24205891
Alignment:
Q  4 agttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttacaga 102  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| ||||||||||  ||||||| ||||||||||||| |    
T  24205720 agttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccatgcaagcagggaccaaactgattgatttacaca 24205819  T
Q  103 aaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaat 174  Q
    ||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||    
T  24205820 aaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaat 24205891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 34400433 - 34400573
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatgaccaaattgattgatttaca 100  Q
    ||||||||||||||||||||||||||  |||| |||| |||||||||||| |||||||||||| |||||| ||      |||||||||||||||||||||    
T  34400433 ttaagttggtctgttaacggaggtgatatgtaatgttgacctcttacaagacttaccacgtcagatgtcacgc-----cgaccaaattgattgatttaca 34400527  T
Q  101 gaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    ||||| || |||||| |||||| || | ||||||||||||||||||    
T  34400528 gaaaaatgtcaaggaccaaattgatggtttttcagaaaattgtcaa 34400573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 2577450 - 2577275
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||| ||||||||||||   |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| | ||||||||||    
T  2577450 ttaatttggtctgttaacagaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgtcacgcaagcagggaccaaactaattgatttac 2577351  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  2577350 acaaaatttcgaaggacgaaattgatggatttacacaaaatt-ccaaggaccaaattgatggattttcagaaaattg 2577275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 14387478 - 14387644
Alignment:
Q  11 ctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttacagaaaattgc 109  Q
    ||||||| | ||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||| |||||| |    
T  14387478 ctgttaaagaaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttacacaaaatttc 14387577  T
Q  110 caaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||| || |||||    ||||||  |||||| ||||||||| |||| |||||||||||    
T  14387578 caaggaccaaattgatggatttaggcaaaatttccaaggaccaaattgatggattttcagaaaattg 14387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 17698079 - 17697933
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||| | | |||||||||||||||||||  ||||| |||||| ||| |||||||||| | |||||| ||||||| | |||||||| |||  |||||    
T  17698079 ttaagttgatatattaacggaggtgacgtgtaacgttaatctcttaaaagacttaccacgttagatgtcacgcaagcagggaccaaattaattagtttac 17697980  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
     |||||||| |||||| |||||| || ||||||||||||||||||||    
T  17697979 tgaaaattgtcaaggaccaaattgatggattttcagaaaattgtcaa 17697933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6783483 - 6783583
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  6783483 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgtcacgcaagcagggaccaaactgattgatttac 6783582  T
Q  100 a 100  Q
    |    
T  6783583 a 6783583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 31475038 - 31474969
Alignment:
Q  12 tgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatga 81  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||| ||||||||||    
T  31475038 tgttaacggaggtgacgtgtactgttaaccgcttacaatgcttaccacgtcagatgtcacgcaagcatga 31474969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 37646448 - 37646371
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca 78  Q
    ||||||||| ||||||||||| ||||| |||| |||||||| ||||||||||||||||||||| |||||| |||||||    
T  37646448 ttaagttggcctgttaacggacgtgacatgtactgttaaccgcttacaaggcttaccacgtcagatgtcacgcaagca 37646371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 37022155 - 37021981
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||||| ||||||||| |||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  37022155 ttaatttggtccgttaacggaagtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgacacgcaagcagggaccaaactgattgatttac 37022056  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | ||||||   |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| ||| ||||||    
T  37022055 acaaaattttgaaggacgaaattgatggatttacacaaaatt-ccaaggaccaaattgatggattttcacaaaatt 37021981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 162045 - 161968
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca 78  Q
    |||||||||||| |||||||||||||| ||||  ||||||| |||||||| |||||||||||| |||||| |||||||    
T  162045 ttaagttggtctattaacggaggtgacatgtaccgttaaccgcttacaagacttaccacgtcagatgtcacgcaagca 161968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 6783935 - 6783985
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  6783935 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 6783985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 24206180 - 24206221
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24206180 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 24206221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 42517759 - 42517819
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||    
T  42517759 caaattgattgatttacagaaaattgtcaaggagcaaattgatggattttcagaaaattgc 42517819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 16376938 - 16376997
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||||| ||||||||||||||||| ||||||||| |||| |||||||||||    
T  16376938 caaattgattgatttacagaaaattgtcaaggaccaaattgatggattttcagaaaattg 16376997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 2768360 - 2768310
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  2768360 ttcaagctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 2768310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 17697653 - 17697603
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  17697653 ttcaagctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 17697603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 37021664 - 37021614
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  37021664 ttcaagctctatgtacaatgatgatgtgggagagcttcaatgttggtgtcc 37021614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 40561392 - 40561346
Alignment:
Q  208 agctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  40561392 agctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 40561346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 34400880 - 34400921
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  34400880 ttcaagctctatgtacaatgatgaggtgagagagcttcaatg 34400921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 39663712 - 39663762
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||| ||||| ||||||||||||||||| || |||||    
T  39663712 ttcaagctctatgtacaacgatgaggtgagagagcttcaatgttggtgtcc 39663762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 42518127 - 42518177
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| |||||||||||| |||| || |||||    
T  42518127 ttcaagctctatgtacaatgatgaggtgagagagctttaatgttggtgtcc 42518177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 6783592 - 6783649
Alignment:
Q  84 aaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaatt 141  Q
    |||||||| |||||||| |||||| ||||||| |||||| || |||||||||||||||    
T  6783592 aaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaatt 6783649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 39456667 - 39456607
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| ||||||||  ||||||||||||||||  |||||||| |||| ||||||||||||    
T  39456667 caaattgattgatttatagaaaattgtcaaggactaaattgatggattttcagaaaattgc 39456607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 6798949 - 6798902
Alignment:
Q  207 aagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||| ||||||||||||| ||||||||||||||||| || |||||    
T  6798949 aagctctgtgtacaatgatgaggtgagagagcttcaatgttggtgtcc 6798902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 17697996 - 17697937
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    ||||||||||  ||| | ||||||||||||||| ||||||||| |||| |||||||||||    
T  17697996 caaattaattagtttactgaaaattgtcaaggaccaaattgatggattttcagaaaattg 17697937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 19906884 - 19906943
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||||| || ||||||| |||||| ||||||||| |||| |||||||||||    
T  19906884 caaattgattgatttacataaaattgccaaggaccaaattgatggattttcagaaaattg 19906943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 34400510 - 34400569
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||||| ||||||| ||||||||| ||||||||| | || |||||||||||    
T  34400510 caaattgattgatttacagaaaaatgtcaaggaccaaattgatggtttttcagaaaattg 34400569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 31474939 - 31474893
Alignment:
Q  144 caaggaacaaattgattgattatcagaaaattgcaaaatttccaacg 190  Q
    |||||| ||||||||||||||  ||||||||||||||||| ||||||    
T  31474939 caaggaccaaattgattgatttacagaaaattgcaaaattcccaacg 31474893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 161931 - 161902
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgc 109  Q
    ||||||||||||||||||||||||||||||    
T  161931 gaccaaattgattgatttacagaaaattgc 161902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 31474935 - 31474906
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgc 109  Q
    ||||||||||||||||||||||||||||||    
T  31474935 gaccaaattgattgatttacagaaaattgc 31474906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 37646346 - 37646293
Alignment:
Q  136 aaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaac 189  Q
    |||||| |||||||  |||||||||||||  ||||||||||||||||| |||||    
T  37646346 aaaattatcaaggacaaaattgattgatttacagaaaattgcaaaattcccaac 37646293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 51)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3152076 - 3152276
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| ||||||  || ||||| |||| |||||||||||||||||| ||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  3152076 ttaagttggtatgttaatagatgtgacatgtaatgttaacctcttacaaggtttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttac 3152175  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
    ||||||||||||| ||  ||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  3152176 agaaaattgccaatgactaaattgattgattttcagaaaattatcaaggaccaaattgattgattttcagaaaattgcaaaattcccaacgactctttct 3152275  T
Q  200 c 200  Q
    |    
T  3152276 c 3152276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 26238845 - 26238987
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  26238845 ttaagttagtctgttaacggaggtgatgtgtactgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcatggaccaaattgattgatttac 26238944  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  26238945 agaaaattgccaaggaccaaattgattgattttcagaaaattg 26238987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42943396 - 42943250
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||    
T  42943396 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttac 42943297  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    |||||||||||||||| |||||| || |||||| |||||||||||||    
T  42943296 agaaaattgccaaggaccaaattgatggatttttagaaaattgtcaa 42943250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 22273861 - 22273719
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||  ||||||  ||||||||||||||||||||    
T  22273861 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcacacaagcagggaccaaattgattgatttac 22273762  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| || |||||| |||||||||    
T  22273761 agaaaattgccaaggaccaaattgatggatttttagaaaattg 22273719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 41824009 - 41824186
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||||| |||||||||||||| ||||  |||||||||||||| |||||||||||||| | | || |||| || | |||||||||||||||||||    
T  41824009 ttaagttggtctattaacggaggtgacttgtacagttaacctcttacatggcttaccacgtcagaagccacgcaaacagggaccaaattgattgatttac 41824108  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    | ||||||||||||||||||||| |||||||||||||||| ||  ||||| |||||||||||||  |||||| |||||    
T  41824109 ataaaattgccaaggatcaaattgattgattttcagaaaagtgcaaaggaccaaattgattgatattcagaatattgc 41824186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 5038032 - 5037893
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||||  || ||||||||||||||||||||    
T  5038032 ttaagttggtctgttaacggaggtgacgtgtaatgttaacctcttacaaggcttaccacgtcagatgccacgcaa--atggaccaaattgattgatttac 5037935  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaatt 141  Q
    |||||||||| ||||| ||  || || |||||||||||||||    
T  5037934 agaaaattgctaaggaccagcttgatggattttcagaaaatt 5037893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 27692807 - 27692631
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||| | ||| || |||||||  ||||||| ||||||||||||    
T  27692807 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtaagatgccacgcaagcagggaccaaactgattgatttac 27692708  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  27692707 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatagattttcagaaaattg 27692631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13106923 - 13107065
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  13106923 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 13107022  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || ||||||||||||||||    
T  13107023 acaaaatttccaaggaccaaattgatggattttcagaaaattg 13107065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 13283965 - 13283823
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||| ||||||| |||||| |||||||  ||||||| ||||||||||||    
T  13283965 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttatcacgtcagatgtcacgcaagcagggaccaaactgattgatttac 13283866  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || ||||||||||||||||    
T  13283865 acaaaatttccaaggaccaaattgatggattttcagaaaattg 13283823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 29239157 - 29238981
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  29239157 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgtcacgcaagcagggaccaaactgattgatttac 29239058  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  29239057 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 29238981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 41040839 - 41040982
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattga-ttta 98  Q
    |||||||||||||||||| |||||||||||||  ||| |||||||||||| |||||||||||| |||||| |||||||  ||||||||||||||| ||||    
T  41040839 ttaagttggtctgttaacagaggtgacgtgtaacgttgacctcttacaagacttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttta 41040938  T
Q  99 cagaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
     ||||||||| |||||| |||||| || ||||||||||||||||    
T  41040939 gagaaaattgtcaaggagcaaattgatggattttcagaaaattg 41040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8608357 - 8608499
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| |||  | |||||||  ||||||| ||||||||||||    
T  8608357 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgcaacgcaagcagggaccaaactgattgatttac 8608456  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || ||||||||||||||||    
T  8608457 acaaaatttccaaggaccaaattgatggattttcagaaaattg 8608499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 33707325 - 33707467
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  33707325 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgtcaagcaagcagggaccaaactgattgatttac 33707424  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | ||||||  |||||| |||||| || |||||||| |||||||    
T  33707425 acaaaattttcaaggaccaaattgatggattttcataaaattg 33707467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 38548801 - 38548659
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  38548801 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 38548702  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | ||||||  |||||| |||||| || ||||||||||||||||    
T  38548701 acaaaattttcaaggaccaaattgatggattttcagaaaattg 38548659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 601674 - 601498
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||| |   |||||||||| |||| ||||||||||||| ||  || ||||||| | |||||| ||||||||||||    
T  601674 ttaagttggtctgttaacggaggtgacgtttcacgttaacctctgacaaagcttaccacgtcaaataccacgcaagcagggaccaaactgattgatttac 601575  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  601574 agaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 601498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 29237270 - 29237446
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagc-atgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||| | ||||||| ||||||||||||    
T  29237270 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcaaggaccaaactgattgatttac 29237369  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||  ||||||||| |||| |||||||||||    
T  29237370 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaagggtcaaattgatggattttcagaaaattg 29237446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33761188 - 33761364
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || ||||| |  ||||||| ||||||||||||    
T  33761188 ttaagttggtctgttaacggaggtgacgtgttacgttaacctctgacaaagcttaccacgtcagatgccacgcaagtagggaccaaactgattgatttac 33761287  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  33761288 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 33761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 35510789 - 35510613
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||| |   |||||||||| |||| ||||| ||||||| |||||| |||||||  ||||||| ||||||||||||    
T  35510789 ttaagttggtctgttaacggaggtgacgtatcacgttaacctctgacaaagcttaacacgtcagatgtcacgcaagcagggaccaaactgattgatttac 35510690  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  35510689 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 35510613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 26238928 - 26239013
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctcct 202  Q
    |||||| |||||||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26238928 caaattgattgatttacagaaaattgccaaggaccaaattgattgattttcagaaaattgcaaaatttccaacgactctttctcct 26239013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 27404329 - 27404504
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| || |||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  27404329 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaccacgtcagatgtcacgcaagcagggaccaaactgattgatttac 27404428  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | |||||| | || ||  ||||| ||  |||| || ||||||  |||||| ||||||||| |||| ||||||||||    
T  27404429 acaaaatttcgaatgactaaattgatgaatttacacaaaatttccaaggaccaaattgatggattttcagaaaatt 27404504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 41824126 - 41824245
Alignment:
Q  83 caaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaat 182  Q
    ||||||||||||||| ||||||| ||| ||||| |||||| |||||| ||||||| |||| ||| || |||||||||||||| |||||||||||||||||    
T  41824126 caaattgattgattttcagaaaagtgcaaaggaccaaattgattgatattcagaatattgccaatgatcaaattgattgattttcagaaaattgcaaaat 41824225  T
Q  183 ttccaacgactctttctcct 202  Q
    | || ||| |||||||||||    
T  41824226 taccgacggctctttctcct 41824245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 35509333 - 35509509
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||||  ||||||||| |||||||||||   |||||||||| |||| ||||||||||||| ||| || ||||||| | |||||| ||||||||||||    
T  35509333 ttaagttgacctgttaacgaaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 35509432  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  35509433 aaaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 35509509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 15308231 - 15308056
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  |||||||||||||||||||     
T  15308231 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttat 15308132  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | ||||||   |||||  ||||  || |||||  | ||||||  |||||| ||||||||| |||| ||||||||||    
T  15308131 acaaaattttgaaggacgaaatcgatggatttaaacaaaatttccaaggaccaaattgatggattttcagaaaatt 15308056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 15488600 - 15488425
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  |||||||||||||||||||     
T  15488600 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttat 15488501  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | ||||||   |||||  ||||  || |||||  | ||||||  |||||| ||||||||| |||| ||||||||||    
T  15488500 acaaaattttgaaggacgaaatcgatggatttaaacaaaatttccaaggaccaaattgatggattttcagaaaatt 15488425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 33762683 - 33762511
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||    || ||||||||||||| |||||| ||||||| | |||||| ||||||||| ||    
T  33762683 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctc----aaagcttaccacgtcagatgtcacgcaagcagggaccaaactgattgattcac 33762588  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  33762587 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 33762511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 43262107 - 43261967
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||||||||||||||||  ||||| | ||  ||||||||||||||| ||||||||||||  |||||| ||||||| | ||||||||||||||||| |    
T  43262107 ttaagttggtctgttaacgg--gtgacatctaccgttaacctcttacaaagcttaccacgtctgatgtcacgcaagcagggaccaaattgattgattttc 43262010  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||  ||| || |||||| ||||||||| | |||||||    
T  43262009 agaaaattttcaaagaccaaattgattgattttaaaaaaattg 43261967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17807138 - 17807217
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg 80  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| | |||| |||||| | |||||||    
T  17807138 ttaagttggcctgttaacggaggtgacatgtactgttaacctcttacaaggcttacgatgtcagatgtcacgtaagcatg 17807217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13484664 - 13484771
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||| |||||| |||||||||| |  |||||||| |||||||||||||||||||| ||| ||  ||||||  |||||||||||| ||||| |    
T  13484664 ttaagttggtctattaacgaaggtgacgtgaac-gttaaccttttacaaggcttaccacgtcagatgccacacaagcagggaccaaattgatggattttc 13484762  T
Q  100 agaaaattg 108  Q
    |||||||||    
T  13484763 agaaaattg 13484771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 13107375 - 13107425
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  13107375 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 13107425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 13283513 - 13283463
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  13283513 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 13283463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 15307769 - 15307719
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  15307769 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 15307719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 15488138 - 15488088
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  15488138 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 15488088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 26239280 - 26239330
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26239280 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 26239330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 27404791 - 27404841
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  27404791 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 27404841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 29238671 - 29238621
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  29238671 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 29238621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 38548349 - 38548299
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  38548349 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 38548299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 41824157 - 41824219
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||||||    
T  41824157 gaccaaattgattgatattcagaatattgccaatgatcaaattgattgattttcagaaaattg 41824219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29694287 - 29694210
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca 78  Q
    ||||||| | |||||||||||||||| ||||| | |||||| ||||||||| ||||||||||||||| || |||||||    
T  29694287 ttaagttagcctgttaacggaggtgatgtgtactattaaccgcttacaaggtttaccacgtcatatgccacgcaagca 29694210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 8608809 - 8608847
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttca 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8608809 ttcaagctctatgtacaatgatgatgtgagagagcttca 8608847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 22273419 - 22273369
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  22273419 ttcaagctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 22273369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 41824092 - 41824155
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaa 180  Q
    |||||| |||||||| || ||||||| |||||| |||||||||||||| |||||||| ||||||    
T  41824092 caaattgattgatttacataaaattgccaaggatcaaattgattgattttcagaaaagtgcaaa 41824155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 41041282 - 41041332
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||| ||||||||||||||| ||||||||||||||||| || |||||    
T  41041282 ttcaagctttatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 41041332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 41824510 - 41824560
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||| ||||||||||||||||||||| ||||||| || |||||    
T  41824510 ttcaagctctatctacaatgatgatgtgagagagtttcaatgttggtgtcc 41824560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 42942946 - 42942896
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||||||| |||| ||||||||||||||||| || |||||    
T  42942946 ttcaagctctatgtacaataatgaggtgagagagcttcaatgttggtgtcc 42942896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 41040922 - 41040983
Alignment:
Q  117 caaattaattgattttc-agaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||||  |||||||||||||||| ||||||||| |||| ||||||||||||    
T  41040922 caaattgattgattttagagaaaattgtcaaggagcaaattgatggattttcagaaaattgc 41040983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 43262026 - 43261966
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||||||||||||| |||| || |||||||||||||| | | ||||||||    
T  43262026 caaattgattgattttcagaaaattttcaaagaccaaattgattgattttaaaaaaattgc 43261966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15562542 - 15562580
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaa 39  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  15562542 ttaagttggtctgttaacggaggtgacatgtactgttaa 15562580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 40338370 - 40338420
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||||||||||||  |||||||| ||||||| || |||||    
T  40338370 ttcaagctctatgtacaatgatgagctgagagagtttcaatgttggtgtcc 40338420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 15562646 - 15562675
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgc 109  Q
    ||||||||||||||||||||||||||||||    
T  15562646 gaccaaattgattgatttacagaaaattgc 15562675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 29693849 - 29693813
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagctt 240  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  29693849 ttcaagctctatgtacaatggtgatgtgagagtgctt 29693813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 38548711 - 38548659
Alignment:
Q  124 attgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||||| || |||||| ||||||| ||||||||| |||| |||||||||||    
T  38548711 attgatttacacaaaattttcaaggaccaaattgatggattttcagaaaattg 38548659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 54)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 47384413 - 47384567
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  47384413 ttaagttggtatgttaacggaggtgacatgtaacgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagtgaccaaattgattgatttac 47384512  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaa 154  Q
    | ||||||| |||||| |||||| ||||||||||||||||||| |||||| ||||    
T  47384513 ataaaattgtcaaggaccaaattgattgattttcagaaaattgccaaggaccaaa 47384567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37114060 - 37114202
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  37114060 ttaagttggtctgttaacggaggtgacgtgtaacattaacctcttacaaggcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 37114159  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||||||| ||||||||| || ||||||||||||||||    
T  37114160 agaaaattgccaatgatcaaattgatggattttcagaaaattg 37114202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 35691551 - 35691688
Alignment:
Q  6 ttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttacagaaa 104  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||    
T  35691551 ttggtctgttaacggaggtggcgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttacagaaa 35691650  T
Q  105 attgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||||| |||||| || ||||||||||||||||    
T  35691651 attgccaaggaccaaattgatggattttcagaaaattg 35691688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 38472379 - 38472521
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| || |||| ||  ||||||||||||||||||||    
T  38472379 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaggcttgccacgtcaaatgccacgcaaacagagaccaaattgattgatttac 38472478  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| |||||| |||||| || ||||||||||||||||    
T  38472479 agaaaattgtcaaggaccaaattgatggattttcagaaaattg 38472521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 39857764 - 39857906
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||| |||||| |||| ||  ||||||||||||||||||||    
T  39857764 ttaagttggtctgttaaccgaggtgacgtgtaacgttaacctcttacatggcttaccacgtcagatgtcacgcaaacagggaccaaattgattgatttac 39857863  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||||||||||| |||||| || ||||||||||||||||    
T  39857864 ataaaattgccaaggaccaaattgatggattttcagaaaattg 39857906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6605367 - 6605225
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||| ||  ||||||  ||| ||||||||||||||||    
T  6605367 ttaagttggtctgttaacggatgtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgccacacaagcagggactaaattgattgatttac 6605268  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| |||||| |||||| || ||||||||||||||||    
T  6605267 agaaaattgtcaaggaccaaattgatggattttcagaaaattg 6605225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 13169653 - 13169511
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||| | |||||| |||||||  ||||||||||||||||||||    
T  13169653 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacatggcttaccacgttagatgtcacgcaagcagggaccaaattgattgatttac 13169554  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | ||||||||||| || ||||||  | ||||||||||||||||    
T  13169553 ataaaattgccaatgaccaaattggtggattttcagaaaattg 13169511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 24226700 - 24226842
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||| || |||  ||||||  |||||||||||||||||||     
T  24226700 ttaagttggtctgttaacggaggtgacgtgtaacgttgacctcttacaaggcttaccacgtcagatatcacacaagcagggaccaaattgattgatttag 24226799  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| |||||| |||||| || ||||||||||||||||    
T  24226800 agaaaattgtcaaggaccaaattgatggattttcagaaaattg 24226842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 29994996 - 29995172
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||   ||||||||| |||| |||| |||||||||||| || |||||||  ||||||| ||||||||||||    
T  29994996 ttaagttggtctgttaacggaggtgacgtgtaacattaacctctgacaaagctttccacgtcatatgccacgcaagcagggaccaaactgattgatttac 29995095  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  29995096 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 29995172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34775117 - 34775259
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||| | |||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  34775117 ttaagttggtatgttaacggaggtgacgtgtaacgttaacctcttacatgacttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 34775216  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| ||||||  ||||| || |||||||| |||||||    
T  34775217 agaaaattgtcaaggactaaattgatggattttcataaaattg 34775259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37791773 - 37791915
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||  |||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||| |||||| |||  ||||||||||||||||||||    
T  37791773 ttaagttggcatgttaacggaggtgacgtgtaccgttaaccacttacaaggcttaccacgtcagatgccatgcaggcagggaccaaattgattgatttac 37791872  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||||||||| | ||| || |||||||| ||||||||||    
T  37791873 aaaaaattgccaagaaccaacttgattgatttacagaaaattg 37791915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 38549714 - 38549826
Alignment:
Q  90 attgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaac 189  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||| |||| |||||| |||||||||||||| | |||||||||||||||| ||||     
T  38549714 attgatttacagaaaattgccaagaaccaaattcattgattttcagaatattgccaaggaccaaattgattgatttttagaaaattgcaaaattcccaat 38549813  T
Q  190 gactctttctcct 202  Q
    | || ||||||||    
T  38549814 ggctttttctcct 38549826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 45361246 - 45361134
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||| |||||||  ||||||||||||  |||| |    
T  45361246 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacatggcttaccacgtcagatgtcacgcaagcagggaccaaattgatgtattttc 45361147  T
Q  100 agaaaattgccaa 112  Q
    | |||||||||||    
T  45361146 ataaaattgccaa 45361134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 35402088 - 35402264
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| ||||| ||||||| ||| |||| |||||  ||||||| ||||| ||||||    
T  35402088 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttatcacgtcagatgccatgtaagcagggaccaaactgattaatttac 35402187  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || |||||| |||||||  |||||||| |||| |||||||||||    
T  35402188 acaaaatttcgaaggacgaaattgatggatttacacaaaattttcaaggactaaattgatggattttcagaaaattg 35402264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 35403589 - 35403413
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||| ||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| |||||| |||||    
T  35403589 ttaaattggtatgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattggtttac 35403490  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  35403489 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 35403413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 22155816 - 22155686
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatgaccaaattgattgatttaca 100  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||        || ||| |   ||||||||| |||||||||||    
T  22155816 ttaagttgctctgttaacggaggtgacgtgtaacgttaacctcttacaaggcttgccacg--------caagcagg---gaccaaattaattgatttaca 22155728  T
Q  101 gaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||||||||| |||||| || ||||||||||||||||    
T  22155727 gaaaattgccaaggaccaaatttatggattttcagaaaattg 22155686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 22211731 - 22211601
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatgaccaaattgattgatttaca 100  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||        || ||| |   ||||||||| |||||||||||    
T  22211731 ttaagttgctctgttaacggaggtgacgtgtaacgttaacctcttacaaggcttgccacg--------caagcagg---gaccaaattaattgatttaca 22211643  T
Q  101 gaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||||||||| |||||| || ||||||||||||||||    
T  22211642 gaaaattgccaaggaccaaattgatggattttcagaaaattg 22211601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 20479689 - 20479514
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||||| |||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  20479689 ttaatttggtccgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgacacgcaagcagggaccaaactgattgatttac 20479590  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | ||||||   |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  20479589 acaaaattttgaaggacgaaattgatggatttacacaaaatt-ccaaggaccaaattgatggattttcagaaaattg 20479514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 48227911 - 48227803
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||| || |||||||  ||||||||||||  |||| |    
T  48227911 ttaagttggtgtgttaacggaggtgacgtgtaacgttaacctcttacaatgcttaccacgtcagatgccacgcaagcagggaccaaattgatgaattttc 48227812  T
Q  100 agaaaattg 108  Q
    |||||||||    
T  48227811 agaaaattg 48227803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 23904755 - 23904861
Alignment:
Q  40 cctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaa 138  Q
    |||||||||||| ||||||||||| |||||| |||||||  ||||||||||||||||||| ||||||||  |||||| |||||| ||  |||||||||||    
T  23904755 cctcttacaaggtttaccacgtcagatgtcacgcaagcagggaccaaattgattgatttatagaaaatt-tcaaggaccaaattgatgaattttcagaaa 23904853  T
Q  139 attgtcaa 146  Q
    ||||||||    
T  23904854 attgtcaa 23904861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46437226 - 46437288
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtca 63  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  46437226 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaagcttaccacgtca 46437288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 27664549 - 27664648
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||| ||||||    
T  27664549 ttaagttggtatgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattaatttac 27664648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 77984 - 77862
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||| ||||| || ||||  ||||||||   |||| |||||||| |||| || |||||||||||  ||||||| ||||||||||||    
T  77984 ttaagttggtctgttaacagaggttacatgtaacgttaaccttcgacaaagcttaccatgtcagatttcatgcaagcagggaccaaactgattgatttac 77885  T
Q  100 agaaaattgccaaggatcaaatt 122  Q
    | |||||| ||||||| ||||||    
T  77884 acaaaatttccaaggaccaaatt 77862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 77534 - 77484
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  77534 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 77484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 20479197 - 20479147
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  20479197 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 20479147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 38550092 - 38550142
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  38550092 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 38550142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 46437834 - 46437896
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| || ||||||||||||||||    
T  46437834 gaccaaattgattgatttactgaaaattgcaaaggaccaaattgatggattttcagaaaattg 46437896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 22211660 - 22211600
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    ||||||||||||||| |||||||||| |||||| ||||||||| |||| ||||||||||||    
T  22211660 caaattaattgatttacagaaaattgccaaggaccaaattgatggattttcagaaaattgc 22211600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 38472462 - 38472522
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||    
T  38472462 caaattgattgatttacagaaaattgtcaaggaccaaattgatggattttcagaaaattgc 38472522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 47384496 - 47384556
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||||    
T  47384496 caaattgattgatttacataaaattgtcaaggaccaaattgattgattttcagaaaattgc 47384556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 6605283 - 6605224
Alignment:
Q  118 aaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||    
T  6605283 aaattgattgatttacagaaaattgtcaaggaccaaattgatggattttcagaaaattgc 6605224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 35691997 - 35692048
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcca 255  Q
    ||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  35691997 ttcaagctctatgtacaatgatgatgtgagaaagcttcaatgttggtgtcca 35692048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 45360813 - 45360763
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  45360813 ttcaagctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 45360763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 46438206 - 46438256
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  46438206 ttcaagctctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 46438256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 34775610 - 34775651
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  34775610 ttcaagctctatgtacaatgatgaggtgagagagcttcaatg 34775651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 38549739 - 38549800
Alignment:
Q  81 accaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||| |||||||| ||||| ||||||||||| |||||| ||||||||| |||||||||    
T  38549739 accaaattcattgattttcagaatattgccaaggaccaaattgattgatttttagaaaattg 38549800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 48851118 - 48851159
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  48851118 ttcaagctctatgcacaatgatgatgtgagagagcttcaatg 48851159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 22155745 - 22155685
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    ||||||||||||||| |||||||||| |||||| |||||| || |||| ||||||||||||    
T  22155745 caaattaattgatttacagaaaattgccaaggaccaaatttatggattttcagaaaattgc 22155685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 24226783 - 24226843
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| ||||||||  |||||||||||||||| ||||||||| |||| ||||||||||||    
T  24226783 caaattgattgatttagagaaaattgtcaaggaccaaattgatggattttcagaaaattgc 24226843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 35691629 - 35691689
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| |||||||||| |||||| ||||||||| |||| ||||||||||||    
T  35691629 caaattgattgatttacagaaaattgccaaggaccaaattgatggattttcagaaaattgc 35691689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 37791856 - 37791928
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaac 189  Q
    |||||| |||||||| || ||||||| |||| | ||| ||||||||||  |||||||||||||||||||||||    
T  37791856 caaattgattgatttacaaaaaattgccaagaaccaacttgattgatttacagaaaattgcaaaatttccaac 37791928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38549666 - 38549714
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaa 49  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  38549666 ttaagttggtctgttaacgaaggtgacgtgtaccgttaacctcttacaa 38549714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 37114500 - 37114550
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||    
T  37114500 ttcaaactctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 37114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 24227118 - 24227159
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  24227118 ttcaagctctatgtacaatgatgagatgagagagcttcaatg 24227159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 34775200 - 34775260
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| |||||||||||||||||  |||||||| |||| ||| ||||||||    
T  34775200 caaattgattgatttacagaaaattgtcaaggactaaattgatggattttcataaaattgc 34775260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 37114143 - 37114203
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| |||||||||| ||| || ||||||||| |||| ||||||||||||    
T  37114143 caaattgattgatttacagaaaattgccaatgatcaaattgatggattttcagaaaattgc 37114203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 39857847 - 39857907
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| || ||||||| |||||| ||||||||| |||| ||||||||||||    
T  39857847 caaattgattgatttacataaaattgccaaggaccaaattgatggattttcagaaaattgc 39857907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 6604916 - 6604867
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||| ||| ||||||||||||||||| || |||||    
T  6604916 ttcaagctctatgtacaatg-tgaggtgagagagcttcaatgttggtgtcc 6604867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 22155377 - 22155327
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| |||||| | |||||||| || |||||    
T  22155377 ttcaagctctatgtacaatgatgaggtgagataacttcaatgttggtgtcc 22155327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 22211292 - 22211242
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||| |||||| | |||||||| || |||||    
T  22211292 ttcaagctctatgtacaatgatgaggtgagataacttcaatgttggtgtcc 22211242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 47384854 - 47384904
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||| ||| ||||||||||||||||||| ||||||| || |||||    
T  47384854 ttcaagctctctgttcaatgatgatgtgagagagattcaatgttggtgtcc 47384904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 13036387 - 13036358
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgc 109  Q
    ||||||||||||||||||||||||||||||    
T  13036387 gaccaaattgattgatttacagaaaattgc 13036358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 38472822 - 38472863
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  38472822 ttcaagctctatgtacaattatgagatgagagagcttcaatg 38472863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 46437837 - 46437897
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| | ||||||||  ||||| ||||||||| |||| ||||||||||||    
T  46437837 caaattgattgatttactgaaaattgcaaaggaccaaattgatggattttcagaaaattgc 46437897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 52642007 - 52642209
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| | |||||||||||||| ||||  |||||| ||||||||  |||||||||||| ||| ||  |||||| | ||||||||||||||||| |    
T  52642007 ttaagttggtatattaacggaggtgacatgtaccgttaacttcttacaaaacttaccacgtcagatgccacacaagcagggaccaaattgattgattttc 52642106  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttct 199  Q
    |||||||| | || || |||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||    
T  52642107 agaaaatttctaatgaccaaattgattgattttcagaaaattgccaaggaacagattgattgattttcagaaaattgcaaaatttccaacaacactttct 52642206  T
Q  200 cct 202  Q
    |||    
T  52642207 cct 52642209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 45045039 - 45045180
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||    
T  45045039 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 45045138  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaatt 141  Q
    |||||||||||||| | |||||| || |||||||||||||||    
T  45045139 agaaaattgccaagaaccaaattgatggattttcagaaaatt 45045180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 50554282 - 50554428
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||||| |||||||||||  |  ||||||||||||||||||||    
T  50554282 ttaagttggtctgttaacgggggtgacgtgtaacgttaacctcttacatggcttaccacgtcaaatgtcatgcaataagggaccaaattgattgatttac 50554381  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    | |||||||||||||| |||||| || ||||||||||||||||||||    
T  50554382 acaaaattgccaaggaccaaattgatggattttcagaaaattgtcaa 50554428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31236938 - 31237079
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||||||||| ||  || |||||||  ||||||||||||||||||||    
T  31236938 ttaagttggtctgttaatggaggtgacgtgtaacgttaaccgcttacaaggcttaccacgtcagataccacgcaagcagagaccaaattgattgatttac 31237037  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaatt 141  Q
    | ||||||| |||||| ||||||||| |||||||||||||||    
T  31237038 ataaaattgtcaaggaccaaattaatggattttcagaaaatt 31237079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 26223706 - 26223882
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| |||||||||||     
T  26223706 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttaa 26223805  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || |||||| |||| || ||||||||| |||| |||||||||||    
T  26223806 acaaaatttccaaggaccaaattgatggatttacacaaaattttcaacgaccaaattgatggattttcagaaaattg 26223882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 37345932 - 37345756
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||| ||||    
T  37345932 ttaagttggtctattaacggaggtgacgtgtaatgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgacttac 37345833  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  37345832 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 37345756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 2871046 - 2870904
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||| ||  ||||||  |||||||||||||||||| |    
T  2871046 ttaagttgctctgttaacggaagtgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgccacacaagcagggaccaaattgattgatttgc 2870947  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| || |||||||| |||||||    
T  2870946 agaaaattgccaaggaccaaattgatggattttcataaaattg 2870904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 3011974 - 3012116
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||||||||||||| ||||||| ||  || |||||||  ||||||||||||||||||||    
T  3011974 ttaagttggtctattaacggagatgacgtgtaacgttaacctcttacaaggcttatcacgtcagataccacgcaagcagagaccaaattgattgatttac 3012073  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||| ||||| |||||| || ||||||||||||||||    
T  3012074 agaaaattgctaaggaccaaattgatggattttcagaaaattg 3012116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 33599337 - 33599479
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||  |||||||||||||||| || |||||||  ||||||| ||||||||||||    
T  33599337 ttaagttggtctgttaacggaggtgacgtgtaactttaacctcttacaaaacttaccacgtcatatgccacgcaagcagggaccaaactgattgatttac 33599436  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || ||||||||||||||||    
T  33599437 acaaaatttccaaggaccaaattgatggattttcagaaaattg 33599479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 51894686 - 51894828
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||| ||| || || ||||  ||||||||||||||||||||    
T  51894686 ttaagttggtctgttaacggaggtgacgtgtaatgttaaactcttacaagacttaccacatcagatgccacgccagcagggaccaaattgattgatttac 51894785  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| ||| || |||||| || ||||||||||||||||    
T  51894786 agaaaattgtcaacgaccaaattgatggattttcagaaaattg 51894828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 8168061 - 8168236
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatgaccaaattgattgatttaca 100  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || ||||| | ||||||| |||||||||||||    
T  8168061 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagtaggaccaaactgattgatttaca 8168160  T
Q  101 gaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
     |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  8168161 caaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 8168236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4854529 - 4854671
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| || |||||||  ||||||| ||||||||||||    
T  4854529 ttaagttggtctgttaacggaggtgatgtgtaacgttaacctctgacaaagcttaccacgtcatatgccacgcaagcagggaccaaactgattgatttac 4854628  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| ||  |||||||||||||||    
T  4854629 acaaaatttccaaggaccaaattgatgtattttcagaaaattg 4854671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 8169538 - 8169362
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| ||||||||| ||    
T  8169538 ttaagttggtctgttaacggaggtgacgtgtcacgttaacctctaacaaagcttaccacgtcagatgtcacgcaagcagggaccaaactgattgattcac 8169439  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  8169438 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 8169362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 27089249 - 27089073
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||||| |||| ||||||||||| | ||| || ||||||| | |||||| ||||||||||||    
T  27089249 ttaagttggtttgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgttagatgccacgcaagcaggaaccaaactgattgatttac 27089150  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| |||| || |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  27089149 acaaaatttccaatgaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 27089073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34776688 - 34776830
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||| ||||||| |||  | |||||||  ||||||| ||||||||||||    
T  34776688 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaacacgtcagatgaaacgcaagcagggaccaaactgattgatttac 34776787  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || ||||||||||||||||    
T  34776788 acaaaatttccaaggaccaaattgatggattttcagaaaattg 34776830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 25276861 - 25277025
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||| || ||||| |  ||||||| ||||||||||||    
T  25276861 ttaagttggtctgttaacggaggtgacgtgtaatgttaacctctgacaaagcttaccacgtcagatgccacgcaagtagggaccaaactgattgatttac 25276960  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgatt 164  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| ||||    
T  25276961 acaaaatttcgaaggacgaaattgatggatttacacaaaatttccaaggaccaaattgatggatt 25277025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37088106 - 37087960
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| ||||||||| | |||||||||  |||||||||||||||| ||||||| |||| ||| ||  |||| | | ||||||||||||||||||     
T  37088106 ttaagttggtttgttaacggtgatgacgtgtaaagttaacctcttacaagacttaccaagtcagatgccacacaagtagggaccaaattgattgatttag 37088007  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    ||||||||| |||||  |||||| ||||||||| |||||||||||||    
T  37088006 agaaaattgtcaagggccaaattgattgatttttagaaaattgtcaa 37087960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 46582129 - 46582271
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| |||| |||||||    
T  46582129 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaaatgatagatttac 46582228  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | ||||||  |||| | |||||| || |||||||| |||||||    
T  46582229 acaaaattttcaagaaccaaattgatggattttcataaaattg 46582271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 1444151 - 1443976
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  1444151 ttaatttggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 1444052  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | ||||||   |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  1444051 acaaaattttgaaggacgaaattgatggatttacacaaaatt-ccaaggaccaaattgatggattttcagaaaattg 1443976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 47011575 - 47011750
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||| |||||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  47011575 ttaatttggcctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 47011674  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  47011675 acaaaatttcgaaggacgaaattgatggatttacacaaaatt-ccaaggatcaaattgatggattttcagaaaattg 47011750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6816956 - 6817106
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagc-atgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||| ||| || |||| | | |||||||||||| ||||| |    
T  6816956 ttaagttggtctgttaacggaggtgacatgtaacgttaacctcttacaagggttaccacgtcagatgccacgcaaacaaggaccaaattgatagattttc 6817055  T
Q  100 agaaa--------attgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||         |||||||||| |||||| || ||||||||||||||||    
T  6817056 agaaattaccaacgttgccaaggaccaaattgatggattttcagaaaattg 6817106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9120158 - 9120333
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||||| |||||||| ||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  9120158 ttaatttggtccgttaacgggggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgacacgcaagcagggaccaaactgattgatttac 9120257  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | ||||||   |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  9120258 acaaaattttgaaggacgaaattgatggatttacacaaaatt-ccaaggaccaaattgatggattttcagaaaattg 9120333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 1443676 - 1443626
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  1443676 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 1443626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 4854968 - 4855018
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  4854968 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 4855018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 9120650 - 9120700
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  9120650 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 9120700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 34777139 - 34777189
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  34777139 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 34777189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 47012050 - 47012100
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  47012050 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 47012100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 52642474 - 52642524
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  52642474 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 52642524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 25276979 - 25277071
Alignment:
Q  84 aaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||||| |||||||| |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  25276979 aaattgatggatttacacaaaatttccaaggaccaaattgatggatttacataaaatttccaaggaccaaattgatggattttcagaaaattg 25277071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 25277009 - 25277071
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||| |||||||| |||||| ||||||| |||||| || ||||||||||||||||    
T  25277009 gaccaaattgatggatttacataaaatttccaaggaccaaattgatggattttcagaaaattg 25277071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 26224196 - 26224242
Alignment:
Q  208 agctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  26224196 agctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 26224242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 27088763 - 27088713
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||| ||||||||||||||||||||||||||| || |||||    
T  27088763 ttcaagctctatgttcaatgatgatgtgagagagcttcaatgttggtgtcc 27088713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 33599790 - 33599840
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||    
T  33599790 ttcaaactctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 33599840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3369549 - 3369602
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggctt 54  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||    
T  3369549 ttaagttggcctgttaacggaggtgacatgtattgtttacctctcacaaggctt 3369602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 51894769 - 51894829
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| |||||||||||||| || ||||||||| |||| ||||||||||||    
T  51894769 caaattgattgatttacagaaaattgtcaacgaccaaattgatggattttcagaaaattgc 51894829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 3012425 - 3012475
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||||||||||||| |||||| ||||||||||||||||| || |||||    
T  3012425 ttcaagctctatgtacagtgatgaggtgagagagcttcaatgttggtgtcc 3012475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 15105870 - 15105820
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||| ||||||||||||| |||||||||||||||||||| || |||||    
T  15105870 ttcaagccctatgtacaatgaagatgtgagagagcttcaatgttggtgtcc 15105820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23577755 - 23577817
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtca 63  Q
    |||| |||| |||||||||||||||||||||   |||||||||| |||| |||||||||||||    
T  23577755 ttaaattggcctgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtca 23577817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 31237389 - 31237439
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||| | ||||||||||||||||| || |||||    
T  31237389 ttcaagctctatgtacaatgataaggtgagagagcttcaatgttgctgtcc 31237439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 37087656 - 37087606
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||| ||||||||||||| ||||||||||||||||| || |||||    
T  37087656 ttcaagctctgtgtacaatgatgaggtgagagagcttcaatgttggtgtcc 37087606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 50554750 - 50554800
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||  ||||||||||||||||| || |||||    
T  50554750 ttcaagctctatgtacaatgatgtggtgagagagcttcaatgttggtgtcc 50554800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 20945010 - 20944885
Alignment:
Q  51 gcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattgtcaagga 149  Q
    ||||||||||||| ||| || ||||||| | | |||| ||||||||||||| |||||| | |||||  ||||| || ||||| || ||||||  |||| |    
T  20945010 gcttaccacgtcagatgccacgcaagcagggatcaaactgattgatttacacaaaatttcgaaggacgaaattgatggatttacacaaaatttccaagaa 20944911  T
Q  150 acaaattgattgattatcagaaaatt 175  Q
     ||||||||| |||| ||||||||||    
T  20944910 ccaaattgatggattttcagaaaatt 20944885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 3012057 - 3012117
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| ||||||||||  ||||| ||||||||| |||| ||||||||||||    
T  3012057 caaattgattgatttacagaaaattgctaaggaccaaattgatggattttcagaaaattgc 3012117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 37088023 - 37087964
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| ||||||||  |||||||||||||||  |||||||||||||| | |||||||||    
T  37088023 caaattgattgatttagagaaaattgtcaagggccaaattgattgatttttagaaaattg 37087964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 50554365 - 50554424
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||||| || ||||||| |||||| ||||||||| |||| |||||||||||    
T  50554365 caaattgattgatttacacaaaattgccaaggaccaaattgatggattttcagaaaattg 50554424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 31237021 - 31237079
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    |||||| |||||||| || |||||||||||||| |||||| || |||| ||||||||||    
T  31237021 caaattgattgatttacataaaattgtcaaggaccaaattaatggattttcagaaaatt 31237079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 15106165 - 15106133
Alignment:
Q  170 aaaattgcaaaatttccaacgactctttctcct 202  Q
    ||||||||||||||||||||| |||||||||||    
T  15106165 aaaattgcaaaatttccaacggctctttctcct 15106133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 28813735 - 28813589
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    |||| ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||| | |||||| |||||||  ||||||||||||||||||||    
T  28813735 ttaaattggtgtgttaacggaggtgacgtgtaacgttaacctcttacaaggcttaccacgttagatgtcacgcaagcagcgaccaaattgattgatttac 28813636  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    |||||||||||||||| |||||| ||  |||||||||||||||||||    
T  28813635 agaaaattgccaaggaccaaattgatgaattttcagaaaattgtcaa 28813589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 28822060 - 28821915
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| |||| ||| || |||||||  ||||||||||||||||||||    
T  28822060 ttaagttggtctgttaacggaagtgacgtgtaacgttaacctcttacaaggcttaccatgtcagatgccaagcaagcagggaccaaattgattgatttac 28821961  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaa 146  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||    
T  28821960 agaaaattgccaagg-tcaaattgatggattttcagaaaattgtcaa 28821915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 30464019 - 30464161
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||| |||||| |||||||  ||||||||||||||||||||    
T  30464019 ttaagttggtctgtttacggaggtgacgtgtaacgttaacctcttacaaggcttaccatgtcagatgtcacgcaagcagggaccaaattgattgatttac 30464118  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||| |||||| |||||| || ||||||||||||||||    
T  30464119 agaaaattgtcaaggaccaaattgatggattttcagaaaattg 30464161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 8541241 - 8541126
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  8541241 ttaagttggtctgttaacggaggtgatgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcatgcaagcagggaccaaattgattgatttac 8541142  T
Q  100 agaaaattgccaagga 115  Q
    ||||||||||||||||    
T  8541141 agaaaattgccaagga 8541126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 12738706 - 12738564
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||| | |||||||||||| ||| || ||||||| | |||||||||||||||||||    
T  12738706 ttaagttggtttgttaacggaggtgacgtgtaacgttaacctcttacatgacttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 12738607  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||||||||||| |||||| || ||||||||||||||||    
T  12738606 ataaaattgccaaggaccaaattgatggattttcagaaaattg 12738564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 12801529 - 12801387
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||| | |||||||||||| ||| || ||||||| | |||||||||||||||||||    
T  12801529 ttaagttggtttgttaacggaggtgacgtgtaacgttaacctcttacatgacttaccacgtcagatgccacgcaagcagggaccaaattgattgatttac 12801430  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||||||||||| |||||| || ||||||||||||||||    
T  12801429 ataaaattgccaaggaccaaattgatggattttcagaaaattg 12801387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 32134355 - 32134497
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||| ||| || |||||||  ||||||||||||||||||||    
T  32134355 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctcttacaaagcttatcacgtcagatgccacgcaagcagggaccaaattgattgatttac 32134454  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| ||  ||||||| |||||||    
T  32134455 agaaaattgccaaggaccaaattgatgaattttcataaaattg 32134497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 17577905 - 17577729
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||| |||||||||  |||||||||| |||| ||||||||||||| |||||| |||||||  ||||||| ||||||||||||    
T  17577905 ttaaattggtctgttaacggagctgacgtgtaacgttaacctctaacaaagcttaccacgtcagatgtcacgcaagcagggaccaaactgattgatttac 17577806  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| ||| |||||||    
T  17577805 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcataaaattg 17577729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 7269416 - 7269274
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||||||| |||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || ||||| |  ||||||| ||||||||||||    
T  7269416 ttaagttgatctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagtagggaccaaactgattgatttac 7269317  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    | |||||| ||||||| |||||| || ||||||||||||||||    
T  7269316 acaaaatttccaaggaccaaattgatggattttcagaaaattg 7269274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 42471667 - 42471808
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| || |||||||||| ||| || |||||||  ||| |||||||| |||||||    
T  42471667 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaccacgtcagatgccacgcaagcagggactaaattgatggatttac 42471766  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaatt 141  Q
    | |||||| ||||||| |||||| || |||||||||||||||    
T  42471767 acaaaatttccaaggaccaaattgatggattttcagaaaatt 42471808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 40782181 - 40782006
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||||| |||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  40782181 ttaatttggtccgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 40782082  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  40782081 acaaaatttcgaaggacgaaattgatggatttacacaaaatt-ccaaggatcaaattgatggattttcagaaaattg 40782006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 21842949 - 21842786
Alignment:
Q  14 ttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttacagaaaattgccaa 112  Q
    ||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || ||||||| | |||||| ||||||||||||| ||||||  |||    
T  21842949 ttaacggaggtgacgtgttacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttacacaaaattttcaa 21842850  T
Q  113 ggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
     || |||||| || ||||| || |||||| ||||||| ||||||||| |||| | |||||||||    
T  21842849 tgaccaaattgatggatttacacaaaattttcaaggaccaaattgatggatttttagaaaattg 21842786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 29620257 - 29620432
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||||| |||||||||||||||||||   |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  29620257 ttaatttggtccgttaacggaggtgacgtgtcacgttaacctctgacaaagcttaccacgtcagatgacacgcaagcagggaccaaactgattgatttac 29620356  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | ||||||   |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  29620357 acaaaattttgaaggacgaaattgatggatttacacaaaatt-ccaaggaccaaattgatggattttcagaaaattg 29620432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 34328797 - 34328651
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaag----gcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgat 95  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||    ||||||||||||| ||| || |||||||  ||||||||||||||||    
T  34328797 ttaagttggtctgttaacggtggtgacgtgtaacgttaacctcttacaaggctagcttaccacgtcagatgccacgcaagcagggaccaaattgattgat 34328698  T
Q  96 ttacagaaaattgccaaggatc-aaattaattgattttcagaaaattg 142  Q
    ||| || |||||  |||||| | ||||| || ||||||||||||||||    
T  34328697 ttagag-aaattttcaaggaccaaaattgatggattttcagaaaattg 34328651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2853005 - 2853104
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||| ||| ||| || ||||||| | |||||| ||||||||||||    
T  2853005 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacttcagatgccacgcaagcaggaaccaaactgattgatttac 2853104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 2181586 - 2181524
Alignment:
Q  80 gaccaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    ||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||    
T  2181586 gaccaaattgattaatttacagaaaattgccaaggaccaaattgatggattttcagaaaattg 2181524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 7268973 - 7268923
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7268973 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttgatgtcc 7268923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 24539933 - 24540057
Alignment:
Q  53 ttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttacagaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaac 151  Q
    ||||||||||| ||| || ||||||| | |||||| ||||||||||||| ||||||  |||||| |||||| || ||||| || ||||||  |||||| |    
T  24539933 ttaccacgtcagatgccacgcaagcagggaccaaactgattgatttacacaaaattttcaaggaccaaattgatggatttacacaaaatttccaaggacc 24540032  T
Q  152 aaattgattgattatcagaaaattg 176  Q
    |||||||| |||| |||||||||||    
T  24540033 aaattgatggattttcagaaaattg 24540057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 21842479 - 21842429
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  21842479 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 21842429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 40781706 - 40781656
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  40781706 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 40781656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 42472130 - 42472180
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  42472130 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 42472180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 30464102 - 30464162
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||    
T  30464102 caaattgattgatttacagaaaattgtcaaggaccaaattgatggattttcagaaaattgc 30464162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 17575412 - 17575362
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  17575412 ttcaagctctatgtacaatgatgatgtgagagagcttccatgttggtgtcc 17575362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 17576132 - 17576082
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  17576132 ttcaagctctatgtacaatgatgatgtgagagagcttccatgttggtgtcc 17576082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 17577443 - 17577393
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  17577443 ttcaagctctatgtacaatgatgatgtgagagagcttccatgttggtgtcc 17577393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 29620749 - 29620799
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  29620749 ttcaagctctatgtacaatgatgatgtgagagagtttcaatgttggtgtcc 29620799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41493963 - 41494042
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg 80  Q
    ||||||||| |||||||||||| |||||||||  ||||||  ||||||||||| ||||| ||| ||||||  ||||||||    
T  41493963 ttaagttggcctgttaacggagatgacgtgtaccgttaactgcttacaaggctcaccacatcagatgtcacacaagcatg 41494042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 2181248 - 2181198
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||| ||||||||||||||||| ||||||||||||||||| || |||||    
T  2181248 ttcaagatctatgtacaatgatgaggtgagagagcttcaatgttggtgtcc 2181198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27077437 - 27077375
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtca 63  Q
    |||||||||  |||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||    
T  27077437 ttaagttggcatgttaatggaggtgacgtgtactgttaacctctcacaaggcttgccatgtca 27077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 8540821 - 8540780
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  8540821 ttcaagctttatgtacaatgatgaggtgagagagcttcaatg 8540780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 30464512 - 30464553
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  30464512 ttcaagctctatgtacaatgataaggtgagagagcttcaatg 30464553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 2181583 - 2181523
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| ||| |||| |||||||||| |||||| ||||||||| |||| ||||||||||||    
T  2181583 caaattgattaatttacagaaaattgccaaggaccaaattgatggattttcagaaaattgc 2181523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 12738623 - 12738563
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| || ||||||| |||||| ||||||||| |||| ||||||||||||    
T  12738623 caaattgattgatttacataaaattgccaaggaccaaattgatggattttcagaaaattgc 12738563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 12801446 - 12801386
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| || ||||||| |||||| ||||||||| |||| ||||||||||||    
T  12801446 caaattgattgatttacataaaattgccaaggaccaaattgatggattttcagaaaattgc 12801386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 28813652 - 28813593
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    |||||| |||||||| |||||||||| |||||| |||||||||  ||| |||||||||||    
T  28813652 caaattgattgatttacagaaaattgccaaggaccaaattgatgaattttcagaaaattg 28813593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 32134806 - 32134845
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaa 243  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  32134806 ttcaagctctacgtacaatgatgaggtgagagagcttcaa 32134845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 18624015 - 18624065
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||||| ||||||| ||||| |||||||||||||||||||| || |||||    
T  18624015 ttcaagccctatgtataatgaagatgtgagagagcttcaatgttggtgtcc 18624065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 34328350 - 34328300
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    |||||||| | ||||||||||||| ||||||||||||||||| || |||||    
T  34328350 ttcaagctttgtgtacaatgatgaggtgagagagcttcaatgttggtgtcc 34328300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 41494404 - 41494445
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||| ||||||||||||| ||||||||||| |||||||||    
T  41494404 ttcaagttctatgtacaatggtgatgtgagagtgcttcaatg 41494445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 1525 - 1385
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcat-gaccaaattgattgatttac 99  Q
    |||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||    
T  1525 ttaagttggtctgttaacgga--tgacgtgtaacgttaacctcttacaaggcttaccacgtcagatgtcacgcaagcagagaccaaattgattgatttac 1428  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattg 142  Q
    |||||||||||||||| |||||| || || |||||||||||||    
T  1427 agaaaattgccaaggaccaaattgatggaatttcagaaaattg 1385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 1033 - 992
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatg 245  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1033 ttcaagctctatgtacaatgatgaggtgagagagcttcaatg 992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 1444 - 1384
Alignment:
Q  117 caaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgc 177  Q
    |||||| |||||||| |||||||||| |||||| ||||||||| || | ||||||||||||    
T  1444 caaattgattgatttacagaaaattgccaaggaccaaattgatggaatttcagaaaattgc 1384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 7207 - 7031
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  7207 ttaagttggtctgttaacggaggtgacgtgtaacgttaacctctgacaaagcttaccacgtcagatgccacgcaagcagggaccaaactgattgatttac 7108  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | |||||| ||||||| |||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  7107 acaaaatttccaaggaccaaattgatggatttacacaaaatttccaaggaccaaattgatggattttcagaaaattg 7031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 106801 - 106978
Alignment:
Q  24 tgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttacagaaaattgccaaggatcaaatt 122  Q
    |||||||||  ||| ||||||||||||||||||||||| | |||||| ||||||| | |||||||||||||||||||  ||||||| |||||| ||||||    
T  106801 tgacgtgtaccgttgacctcttacaaggcttaccacgttagatgtcacgcaagcagggaccaaattgattgatttacgtaaaattgtcaaggaccaaatt 106900  T
Q  123 aattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattgcaaaatttccaacgactctttctc 200  Q
     ||||||||||| ||||||| |||||| |||||||||||||| ||| |||||||  ||||| ||| || |||||||||    
T  106901 gattgattttcataaaattgccaaggaccaaattgattgattttcaaaaaattgtgaaattcccagcggctctttctc 106978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 107234 - 107284
Alignment:
Q  204 ttcaagctctatgtacaatgatgatgtgagagagcttcaatgatgatgtcc 254  Q
    ||||| ||| |||||||||||||||||||||||||||||||| || |||||    
T  107234 ttcaaactcaatgtacaatgatgatgtgagagagcttcaatgttggtgtcc 107284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1712 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1712
Description:

Target: scaffold1712; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 1101 - 1276
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagcatg-accaaattgattgatttac 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||| |||| || |||||||||| ||| || ||||||| | ||||||||||| |||||||    
T  1101 ttaaattggtctgttaacggaggtgacgtgtcacgttaacctctgacaaagcgtaccacgtcaaatgccacgcaagcagggaccaaattgatggatttac 1200  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaatt 175  Q
    | |||||| | |||||  ||||| || ||||| || ||||||  |||||||||||||||| |||| ||||||||||    
T  1201 acaaaatttcgaaggactaaattgatggatttacacaaaatttccaaggaacaaattgatggattttcagaaaatt 1276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 54228 - 54053
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaagca-tgaccaaattgattgatttac 99  Q
    |||| |||||| |||||||||||||||||||   |||||||| | |||| ||||||||||||| ||| || |||||||  ||||||| ||||||||||||    
T  54228 ttaatttggtccgttaacggaggtgacgtgtcacgttaacctttgacaaagcttaccacgtcagatgacacgcaagcagggaccaaactgattgatttac 54129  T
Q  100 agaaaattgccaaggatcaaattaattgattttcagaaaattgtcaaggaacaaattgattgattatcagaaaattg 176  Q
    | ||||||   |||||  ||||| || ||||| || ||||||  |||||| ||||||||| |||| |||||||||||    
T  54128 acaaaattttgaaggacgaaattgatggatttacacaaaatt-acaaggaccaaattgatggattttcagaaaattg 54053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 63691 - 63617
Alignment:
Q  1 ttaagttggtctgttaacggaggtgacgtgtattgttaacctcttacaaggcttaccacgtcatatgtcatgcaa 75  Q
    ||||||||||| |||||| || ||||| || | |||||||||||||||||||||||||||||| |||||| ||||    
T  63691 ttaagttggtcagttaactgatgtgacatgcagtgttaacctcttacaaggcttaccacgtcagatgtcacgcaa 63617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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