View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4285_low_62 (Length: 248)

Name: NF4285_low_62
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4285_low_62
NF4285_low_62
[»] chr4 (22 HSPs)
chr4 (58-236)||(6216341-6216519)
chr4 (57-237)||(12499158-12499345)
chr4 (56-236)||(49888288-49888473)
chr4 (55-157)||(44363353-44363456)
chr4 (79-236)||(1351411-1351574)
chr4 (74-236)||(18879104-18879273)
chr4 (75-157)||(15562131-15562213)
chr4 (55-144)||(18879331-18879421)
chr4 (74-236)||(36061161-36061330)
chr4 (57-144)||(6216196-6216283)
chr4 (63-144)||(12499019-12499101)
chr4 (58-157)||(43365798-43365898)
chr4 (55-144)||(44362908-44362998)
chr4 (78-156)||(51871596-51871674)
chr4 (57-121)||(11995980-11996045)
chr4 (57-157)||(38435084-38435185)
chr4 (58-144)||(1351266-1351353)
chr4 (78-124)||(46694733-46694779)
chr4 (15-44)||(6216537-6216566)
chr4 (158-237)||(44363055-44363130)
chr4 (77-121)||(51871865-51871909)
chr4 (58-118)||(53320954-53321014)
[»] scaffold0157 (2 HSPs)
scaffold0157 (57-237)||(21132-21319)
scaffold0157 (63-144)||(21376-21458)
[»] chr8 (13 HSPs)
chr8 (79-234)||(3207640-3207802)
chr8 (77-215)||(39186172-39186318)
chr8 (75-146)||(20771666-20771737)
chr8 (75-146)||(20781460-20781531)
chr8 (74-157)||(24587104-24587187)
chr8 (75-156)||(32089259-32089340)
chr8 (75-154)||(13267811-13267889)
chr8 (75-141)||(32077190-32077256)
chr8 (156-236)||(36632780-36632856)
chr8 (75-121)||(3207875-3207921)
chr8 (204-234)||(20771571-20771601)
chr8 (204-234)||(20781365-20781395)
chr8 (202-234)||(24587238-24587270)
[»] chr3 (16 HSPs)
chr3 (74-236)||(39492301-39492470)
chr3 (75-237)||(38216098-38216268)
chr3 (79-150)||(14742189-14742260)
chr3 (58-236)||(43071686-43071869)
chr3 (77-157)||(39450854-39450934)
chr3 (63-236)||(49726546-49726727)
chr3 (75-152)||(38018442-38018519)
chr3 (75-144)||(39450637-39450706)
chr3 (75-135)||(38216334-38216394)
chr3 (55-144)||(25189640-25189730)
chr3 (68-142)||(31397534-31397608)
chr3 (202-236)||(38018392-38018426)
chr3 (112-157)||(864593-864638)
chr3 (79-132)||(11256774-11256827)
chr3 (79-144)||(49726424-49726489)
chr3 (55-126)||(32109782-32109854)
[»] chr2 (7 HSPs)
chr2 (75-157)||(35695322-35695404)
chr2 (55-236)||(35021116-35021304)
chr2 (69-237)||(40609674-40609843)
chr2 (81-135)||(42006380-42006434)
chr2 (55-135)||(1602882-1602963)
chr2 (112-157)||(1602694-1602739)
chr2 (56-124)||(40609920-40609989)
[»] chr7 (19 HSPs)
chr7 (78-236)||(20896286-20896453)
chr7 (81-157)||(37327527-37327603)
chr7 (56-144)||(27567849-27567937)
chr7 (55-147)||(44858056-44858148)
chr7 (55-157)||(29366581-29366684)
chr7 (88-152)||(16492836-16492900)
chr7 (58-144)||(37327296-37327383)
chr7 (89-154)||(39751209-39751274)
chr7 (75-151)||(4965359-4965435)
chr7 (55-136)||(36742218-36742300)
chr7 (57-126)||(42055285-42055353)
chr7 (101-237)||(46303705-46303847)
chr7 (77-157)||(3565600-3565680)
chr7 (110-157)||(17298693-17298740)
chr7 (129-232)||(23415960-23416068)
chr7 (75-138)||(29366368-29366431)
chr7 (87-234)||(44857847-44858000)
chr7 (76-121)||(3565388-3565433)
chr7 (55-119)||(27567323-27567388)
[»] chr1 (16 HSPs)
chr1 (75-236)||(15061593-15061759)
chr1 (55-236)||(3505071-3505246)
chr1 (75-143)||(9388811-9388879)
chr1 (76-157)||(26767638-26767718)
chr1 (57-157)||(7191862-7191962)
chr1 (74-237)||(43670840-43671009)
chr1 (97-157)||(12857501-12857561)
chr1 (57-136)||(15061448-15061528)
chr1 (55-138)||(43344795-43344879)
chr1 (78-137)||(41666320-41666379)
chr1 (157-234)||(43344914-43344987)
chr1 (75-140)||(7192110-7192175)
chr1 (55-157)||(38275986-38276087)
chr1 (157-236)||(44166602-44166676)
chr1 (55-151)||(43670693-43670790)
chr1 (110-147)||(44518065-44518102)
[»] chr6 (10 HSPs)
chr6 (79-154)||(4838036-4838111)
chr6 (79-157)||(6196721-6196799)
chr6 (76-237)||(2236884-2237051)
chr6 (75-140)||(28587862-28587927)
chr6 (89-157)||(10244519-10244587)
chr6 (79-234)||(33819827-33819988)
chr6 (78-121)||(6198103-6198146)
chr6 (55-144)||(28587612-28587702)
chr6 (80-144)||(24800116-24800180)
chr6 (58-152)||(10244288-10244382)
[»] chr5 (11 HSPs)
chr5 (79-157)||(13639595-13639673)
chr5 (79-157)||(5548110-5548188)
chr5 (68-157)||(30223794-30223883)
chr5 (78-236)||(39741411-39741576)
chr5 (87-157)||(3577571-3577641)
chr5 (68-237)||(13360993-13361170)
chr5 (157-237)||(14626370-14626446)
chr5 (58-123)||(19895452-19895517)
chr5 (78-126)||(3577786-3577834)
chr5 (56-144)||(30224025-30224114)
chr5 (78-126)||(42552560-42552608)
[»] scaffold0062 (2 HSPs)
scaffold0062 (88-236)||(20253-20403)
scaffold0062 (88-236)||(30421-30571)
[»] scaffold0136 (1 HSPs)
scaffold0136 (55-126)||(32349-32419)
[»] scaffold0122 (1 HSPs)
scaffold0122 (79-157)||(17758-17836)
[»] scaffold0633 (1 HSPs)
scaffold0633 (78-137)||(8850-8909)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 6216519 - 6216341
Alignment:
Q  58 ttaactgcaattttgatcc-cctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct 156  Q
    ||||||||||||||| ||| |||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6216519 ttaactgcaattttggtcctcctatttttatcattttgcaaaattgttcccc-tattttaaaatttgacaactttggtccctctatcaaatattttgtct 6216421  T
Q  157 atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6216420 atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 6216341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 12499345 - 12499158
Alignment:
Q  57 cttaactgcaattttgatcccct-attttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtc 155  Q
    ||||| |||| |||| ||||||| ||||| || ||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  12499345 cttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtc 12499246  T
Q  156 ta------tatgatatg---tttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
    ||      | || ||||   ||||||||||||||||| || | |||||||||   |||||||||| |||||||||||||||||||||||||    
T  12499245 taaaatattgtggtatgatatttttaaatgaagttttcaagggaattttgtt---acaatttcattgatgttgatctttttccatcttcat 12499158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 49888473 - 49888288
Alignment:
Q  56 gcttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtc 155  Q
    |||||| ||||||||||| | |||||||| ||||||||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||||| ||||||    
T  49888473 gcttaattgcaattttgacctcctatttttatcattttgcaaaattggttcccctattttaaaatttgataatttttgttcctctatcaaatactttgtc 49888374  T
Q  156 t-------atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |       |||||||||| |||||||||||||||| ||   ||||||||| ||| ||||| || || ||||||| |||||||||||||    
T  49888373 taattgtgatatgatatg-ttttaaatgaagttttcaagagaattttgttacaa-aatttaatggacgttgatcgttttccatcttca 49888288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 44363456 - 44363353
Alignment:
Q  55 ggcttaactgcaattttgatcccct-attttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttg 153  Q
    ||||||| |||| ||||| |||||| |||||||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  44363456 ggcttaattgcagttttggtccccttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctataaaatattttg 44363357  T
Q  154 tcta 157  Q
    ||||    
T  44363356 tcta 44363353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 1351574 - 1351411
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta------tatgatatg----tt 168  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||  |||| |||||||||||||||||||| ||||||||      | |||||||     |    
T  1351574 tattttcattattttgtgaaattggtcctcctattttaaaattcaacaattttggtccctctatcaaata-tttgtctaaaatattgtgatatgatttgt 1351476  T
Q  169 tttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||||||||| |||| || |||||||||||   |||||||||||||||||||||||||||||||||||    
T  1351475 tttaaatgaatttttcaaggaaattttgtt---acaatttcatcgatgttgatctttttccatcttca 1351411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 236
Target Start/End: Original strand, 18879104 - 18879273
Alignment:
Q  74 tcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta-----------tatga 162  Q
    |||| |||||| || |||||| ||||| |||| |||||||||||||||  |||| ||||||| |||||| ||||||||||||||           |||||    
T  18879104 tcccttattttaattattttgcaaaatcggtcgccctattttaaaattcaacaattttggtcactctataaaatattttgtctaaaatactgtgatatga 18879203  T
Q  163 tatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||||||| |||||||||| | || |||| ||||||   |||||||||||||||||||||||||||||||||||    
T  18879204 tatgtttt-aaatgaagttatcaaggaaaatttgtt---acaatttcatcgatgttgatctttttccatcttca 18879273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 15562131 - 15562213
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||| ||||| |||||||| | |||||| |||||||||||||||||||||||  ||||||||||||||| |||| ||||||||    
T  15562131 ccccgatttttatcattttatgaaattgatccccctattttaaaatttgacagttttggtccctctatctaataatttgtcta 15562213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 18879421 - 18879331
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    ||||||| |||||||||| ||||| |||||||| ||||||| | ||||| |||||||| ||||||||||||||| ||||||||||| ||||    
T  18879421 ggcttaattgcaattttggtccccctattttcaccattttgcataattgatccccctaatttaaaatttgacaattttggtccctccatca 18879331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 36061330 - 36061161
Alignment:
Q  74 tcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct-----------atatga 162  Q
    |||||| ||||||| |||||   ||||||||||||||||||||||||| ||||| |||||| ||||||||||| | ||| |||           ||||||    
T  36061330 tcccctcttttcattattttacgaaattggtccccctattttaaaattggacaattttggttcctctatcaaaaaatttatctaaaatattgtgatatga 36061231  T
Q  163 tatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||| |||||||| ||  |||||||| ||||||||||   |||||| || ||||||||||||||||||||||||    
T  36061230 tatg-ttttaaataaaaattttaaaggaattttgttg---caattttattgatgttgatctttttccatcttca 36061161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 6216196 - 6216283
Alignment:
Q  57 cttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    ||||| |||||||||| ||||||||||||| || |||| | |||||||||||||||||||||||| || |  ||||||||||| ||||    
T  6216196 cttaattgcaattttggtcccctattttcaccactttgcagaattggtccccctattttaaaattcgatagttttggtccctccatca 6216283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 12499019 - 12499101
Alignment:
Q  63 tgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||| ||||||||||| |||||||| ||||||| | |||||||||||||||||||||||| ||||  ||||||||||| ||||    
T  12499019 tgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatca 12499101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 43365798 - 43365898
Alignment:
Q  58 ttaactgcaattttgatccc-ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct 156  Q
    |||| |||| |||| ||||| ||||||| | ||||||| ||||||||||| | |||||||||||| ||||  |||||| |||||||| ||||||||||||    
T  43365798 ttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtct 43365897  T
Q  157 a 157  Q
    |    
T  43365898 a 43365898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 44362908 - 44362998
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    ||||||| |||| ||||| ||||| |||||||| ||||||||| ||||||||||||| |||||||| | ||||  ||||||||||| ||||    
T  44362908 ggcttaattgcagttttggtccccctattttcaccattttgtagaattggtccccctgttttaaaactcgacagttttggtccctccatca 44362998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 51871596 - 51871674
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct 156  Q
    ||||||||| |||||| | ||||||||| || ||||||||||||||||| |||| ||| ||||||| |||| |||||||    
T  51871596 ctattttcaccattttatgaaattggtctccgtattttaaaatttgacagctttagtctctctatctaataatttgtct 51871674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 11995980 - 11996045
Alignment:
Q  57 cttaactgcaattttgatccccta-ttttcatcattttgtaaaattggtccccctattttaaaatt 121  Q
    ||||| |||| ||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||    
T  11995980 cttaattgcagttttgatcccctaattttcatctttttgtgaaattggtccccttattttaaaatt 11996045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 38435084 - 38435185
Alignment:
Q  57 cttaactgcaattttgatcc-cctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtc 155  Q
    ||||| |||| ||||||||| ||||||| |||||||||||  ||| ||||  |||||||||||||||||||  ||||||||||| | ||||| ||| |||    
T  38435084 cttaattgcagttttgatcctcctatttccatcattttgtggaatcggtcttcctattttaaaatttgacagttttggtccctccaccaaatgtttggtc 38435183  T
Q  156 ta 157  Q
    ||    
T  38435184 ta 38435185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 1351266 - 1351353
Alignment:
Q  58 ttaactgcaattttgatcc-cctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||| |||||||||| ||| ||||||||||  | |||| | ||||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  1351266 ttaattgcaattttggtcctcctattttcacaactttgcagaattggttcccttattttaaaattcgacaattttggtccctctatca 1351353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 46694733 - 46694779
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttga 124  Q
    ||||||| |||||||||||||||||||   |||||||||||||||||    
T  46694733 ctatttttatcattttgtaaaattggtgatcctattttaaaatttga 46694779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 6216566 - 6216537
Alignment:
Q  15 aagtataatactccttttggtctcaaatat 44  Q
    ||||||||||||||||||||||||||||||    
T  6216566 aagtataatactccttttggtctcaaatat 6216537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 44363130 - 44363055
Alignment:
Q  158 tatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
    ||||||||||||| |||||||||||| || | |||||||||   |||||||||||||  ||||||||| | |||||||||    
T  44363130 tatgatatgtttt-aaatgaagttttcaagggaattttgtt---acaatttcatcgacattgatctttattcatcttcat 44363055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 51871909 - 51871865
Alignment:
Q  77 cctattttcatcattttgtaaaattggtccccctattttaaaatt 121  Q
    |||||||||||| |||||| |||||||||||  ||||||||||||    
T  51871909 cctattttcatctttttgtgaaattggtccctttattttaaaatt 51871865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 53320954 - 53321014
Alignment:
Q  58 ttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaa 118  Q
    |||| |||| ||||| || |||||||| ||||||||| |||||| |||| |||||||||||    
T  53320954 ttaattgcagttttggtcacctatttttatcattttgcaaaattagtcctcctattttaaa 53321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 21132 - 21319
Alignment:
Q  57 cttaactgcaattttgatcccct-attttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtc 155  Q
    ||||| |||| |||| ||||||| ||||| || ||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21132 cttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtc 21231  T
Q  156 ta------tatgatatg---tttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
    ||      | || ||||   ||||||||||||||||| || | |||||||||   |||||||||| |||||||||||||||||||||||||    
T  21232 taaaatattgtggtatgatatttttaaatgaagttttcaagggaattttgtt---acaatttcattgatgttgatctttttccatcttcat 21319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 21458 - 21376
Alignment:
Q  63 tgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||| ||||||||||| |||||||| ||||||| | |||||||||||||||||||||||| ||||  ||||||||||| ||||    
T  21458 tgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatca 21376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 3207640 - 3207802
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct-----------atatgatatgt 167  Q
    |||||||||||||||  |||||||||| | ||||||||||||| ||||| ||| ||||||||||||||||||||||||           ||||||||||     
T  3207640 tattttcatcattttacaaaattggtctctctattttaaaattcgacaattttagtccctctatcaaatattttgtctaaaatattgtgatatgatatg- 3207738  T
Q  168 ttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatctt 234  Q
    |||||||||||||||| || |||||||||||   |||||||||||||||||||| ||||| ||||||    
T  3207739 ttttaaatgaagttttcaatgaaattttgtt---acaatttcatcgatgttgatattttttcatctt 3207802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 39186172 - 39186318
Alignment:
Q  77 cctattttcatcattttgtaaaattggtccccctattttaaaa-tttgacaactttggtccctctatcaaatattttgtct-----------atatgata 164  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||| |||| ||||||||||| |||||||||||           |||| |||    
T  39186172 cctattttcatcattttgcaaaattggtccccctattttaaaacttcgacaattttgatccctctatcacatattttgtctaaaatattgtgatatcata 39186271  T
Q  165 tgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgat 215  Q
    || |||||||||||||||||||||||||||||||   ||||||||||||||    
T  39186272 tg-ttttaaatgaagtttttaaagaaattttgtt---acaatttcatcgat 39186318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 20771737 - 20771666
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaa 146  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||| |||  |||||| |||||||||||    
T  20771737 cccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaa 20771666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 20781531 - 20781460
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaa 146  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||| |||  |||||| |||||||||||    
T  20781531 cccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaa 20781460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 24587104 - 24587187
Alignment:
Q  74 tcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    ||||||||||| |  ||||||||   |||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  24587104 tcccctatttttactattttgtagttttggtctccatattttaaaattcgacaattttggtccctctatcaaatattttgtcta 24587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 32089340 - 32089259
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct 156  Q
    |||||||||||||| |||||| ||||||||||||||||||| || || ||||  ||||||| ||||||| |||| |||||||    
T  32089340 cccctattttcatctttttgtgaaattggtccccctattttgaagttcgacagttttggtctctctatctaataatttgtct 32089259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 13267811 - 13267889
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgt 154  Q
    |||||||||| |  |||||||||||||||||||| |||||||||||| ||||  |||||||||||| || ||||||||||    
T  13267811 cccctatttttactattttgtaaaattggtcccc-tattttaaaattcgacagttttggtccctctttctaatattttgt 13267889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 32077190 - 32077256
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctcta 141  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| ||||| |  |||||||| ||||    
T  32077190 cccctattttcatctttttgtaaaattgatccccctattttaaagtttgatagttttggtccttcta 32077256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 36632856 - 36632780
Alignment:
Q  156 tatatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||||||| || ||||||| |||||||| |||| |||||||||   ||||||||||||||||| ||||||||| |||||||    
T  36632856 tatatgatttgattttaaa-gaagttttcaaaggaattttgtt---acaatttcatcgatgttaatctttttctatcttca 36632780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 3207921 - 3207875
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatt 121  Q
    ||||||||||||  |||||| | ||||||||||||||||||||||||    
T  3207921 cccctattttcactattttgcagaattggtccccctattttaaaatt 3207875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 20771601 - 20771571
Alignment:
Q  204 aatttcatcgatgttgatctttttccatctt 234  Q
    |||||||||||||||||||||||||||||||    
T  20771601 aatttcatcgatgttgatctttttccatctt 20771571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 20781395 - 20781365
Alignment:
Q  204 aatttcatcgatgttgatctttttccatctt 234  Q
    |||||||||||||||||||||||||||||||    
T  20781395 aatttcatcgatgttgatctttttccatctt 20781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 24587238 - 24587270
Alignment:
Q  202 acaatttcatcgatgttgatctttttccatctt 234  Q
    |||||||||||||||||||||||||| ||||||    
T  24587238 acaatttcatcgatgttgatcttttttcatctt 24587270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 236
Target Start/End: Original strand, 39492301 - 39492470
Alignment:
Q  74 tcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct-----------atatga 162  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||||||           ||||||    
T  39492301 tcccttattttcatcattttgcaaaattggtccccctattataaaattcgacaatgttggtccctctatcaaatattttgtctaaaatattgtgatatga 39492400  T
Q  163 tatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||| ||| |||||||||||| || | |||||||||   |||| |||||| ||||||||||||| |||||||||    
T  39492401 tatg-tttcaaatgaagttttcaagggaattttgtt---acaacttcatcaatgttgatcttttaccatcttca 39492470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 38216098 - 38216268
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtcccc-ctattttaaaatttgacaactttggtccctctatcaaatattttgtct-----------atatga 162  Q
    ||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||           ||||||    
T  38216098 cccctattttcttcattttgtgaaattggtcccccctattttaaaattcgacaattttggtcgctctatcaaatattttgtctaaaatattgtgatatga 38216197  T
Q  163 tatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
    |||| |||||||| ||||||| ||   |||||||||   |||||||||| ||||||||| |||||||||||||||    
T  38216198 tatg-ttttaaataaagttttcaagagaattttgtt---acaatttcattgatgttgatttttttccatcttcat 38216268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 14742260 - 14742189
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatatt 150  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  14742260 tattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatatt 14742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 43071869 - 43071686
Alignment:
Q  58 ttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatatt------- 150  Q
    |||| |||| |||||||||| |||||| |||||||||| ||||||||||  ||||||||||||| ||||| |||||||| |||||||||||||           
T  43071869 ttaattgcagttttgatcccatatttttatcattttgtgaaattggtccatctattttaaaattcgacaattttggtccttctatcaaatattgtctaaa 43071770  T
Q  151 ---ttgtctatatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
       ||||  |||||||||| ||||||| |||||||| ||   |||||||||   ||||||||||||||||| |||||||||||||||||    
T  43071769 atattgt-gatatgatatg-ttttaaacgaagttttcaagagaattttgtt---acaatttcatcgatgttaatctttttccatcttca 43071686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 39450934 - 39450854
Alignment:
Q  77 cctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||| |||||| || ||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  39450934 cctatttttatcattatgcaaaattggtccacctattttaaaatttaacaattttggtctctctatcaaatattttgtcta 39450854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 49726727 - 49726546
Alignment:
Q  63 tgcaattttgatcccct-attttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta---- 157  Q
    |||| |||||||||||| ||||| |||||||||| |||||  |||| ||||||||| |||||| || ||||||| ||||||||||||||||||  |        
T  49726727 tgcagttttgatccccttatttttatcattttgtgaaattaatccctctattttaatatttgataattttggtctctctatcaaatattttgtacagaat 49726628  T
Q  158 --tatgatatg----tttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
      | |||||||     |||||||||||||||| ||  ||||||||||   |||||||||||||||||||||||||| ||||||||    
T  49726627 attgtgatatgatatattttaaatgaagttttcaagaaaattttgtt---acaatttcatcgatgttgatctttttacatcttca 49726546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 38018519 - 38018442
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatatttt 152  Q
    ||||||||||| ||||||| || |||||||| | ||||||||||||||||||| |||||||||| ||| |||||||||    
T  38018519 cccctattttcttcattttatagaattggtctctctattttaaaatttgacaattttggtccctatattaaatatttt 38018442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 39450637 - 39450706
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||||  |||| |||||| ||||    
T  39450637 cccctattttcaccattttgcagaattggtccccctattttaaaatttgacagttttgatccctccatca 39450706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 38216394 - 38216334
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtc 135  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||| ||||  |||||||    
T  38216394 cccctattttcaccattttgcataattggtccccctattttaaaattcgacacttttggtc 38216334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 25189730 - 25189640
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    ||||||| |||| ||||| ||||| |||||| | ||||||| | ||||||||||||||||||||||||  |||  ||||||||||| ||||    
T  25189730 ggcttaattgcagttttggtccccctatttttaccattttgcagaattggtccccctattttaaaattcaacagttttggtccctccatca 25189640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 31397608 - 31397534
Alignment:
Q  68 ttttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctat 142  Q
    ||||||||||||||||| || ||||| | |||||||||  |||||||||||| || |||  ||||||| ||||||    
T  31397608 ttttgatcccctatttttattattttttgaaattggtcttcctattttaaaagttaacatttttggtctctctat 31397534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 38018426 - 38018392
Alignment:
Q  202 acaatttcatcgatgttgatctttttccatcttca 236  Q
    ||||||||||||||||||||| |||||||||||||    
T  38018426 acaatttcatcgatgttgatcgttttccatcttca 38018392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 864638 - 864593
Alignment:
Q  112 ttttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||    
T  864638 ttttaaaatttgacaaatttggtccctcgatcaaataattagtcta 864593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 11256774 - 11256827
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttg 132  Q
    |||||||| ||||||| | ||||| ||| |||||||||||||||||||| ||||    
T  11256774 tattttcaccattttggagaattgatcctcctattttaaaatttgacaattttg 11256827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 49726424 - 49726489
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    ||||||||||||||| || ||||| |   |||||||||||||||||||  ||||||||||| ||||    
T  49726424 tattttcatcattttatagaattgattttcctattttaaaatttgacagttttggtccctccatca 49726489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 32109854 - 32109782
Alignment:
Q  55 ggcttaactgcaattttgatccc-ctattttcatcattttgtaaaattggtccccctattttaaaatttgaca 126  Q
    ||||||| |||| ||||| |||| ||||||| ||| ||||||  ||||||||||||||||| |||||| ||||    
T  32109854 ggcttaattgcagttttggtccctctattttgatctttttgttgaattggtccccctatttcaaaattcgaca 32109782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 35695322 - 35695404
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||||| ||||    
T  35695322 cccctattttcaccattttgtaaaattggtccccttattttaaaattcgacaactttggtccctttatctaatattttatcta 35695404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 35021304 - 35021116
Alignment:
Q  55 ggcttaactgcaattttgatc-ccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttg 153  Q
    ||||||| |||| ||||| || |||| |||||||||||||| ||||||||||| |||||| | ||||| ||||| |||||||| |||||||||| |||||    
T  35021304 ggcttaaatgcagttttgctctccctcttttcatcattttgcaaaattggtcctcctattat-aaattagacaattttggtccttctatcaaattttttg 35021206  T
Q  154 tct-----------atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||           |||||||||| |||||||||||||||| ||  ||||||||| |   |||||| ||||||||||||||||||| |||||||    
T  35021205 tctaaaatattgtgatatgatatg-ttttaaatgaagttttcaagaaaattttgtcg---caattttatcgatgttgatctttttctatcttca 35021116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 40609674 - 40609843
Alignment:
Q  69 tttgatccc-ctattttcatcattttgtaaaattggtccc-cctattttaaaatttgacaactttggtccctctatcaaatattttgtctatatgatatg 166  Q
    ||||||||| ||||||| |||||||||  |||||| |||| |||||||||||||| ||||| ||| |||    ||||||||||||||||| | |||||||    
T  40609674 tttgatccctctatttttatcattttgcgaaattgatccctcctattttaaaattcgacaattttagtcttggtatcaaatattttgtctttgtgatatg 40609773  T
Q  167 --tttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
       |||||||| || |||| | |  |||||||||   ||||||||||| ||||| |||||||| |||||||||    
T  40609774 atgttttaaataaaattttcataagaattttgtt---acaatttcatcaatgttaatcttttttcatcttcat 40609843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 42006380 - 42006434
Alignment:
Q  81 ttttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtc 135  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||  |||||||    
T  42006380 ttttcatctttttgtaaaatcggtcctcctattttaaaatttgacagttttggtc 42006434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 1602963 - 1602882
Alignment:
Q  55 ggcttaactgcaattttgatccc-ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtc 135  Q
    ||||||| | |||||||| |||| ||||||||| |||||||   | ||||||||||||||||||||| |||||| |||||||    
T  1602963 ggcttaattacaattttggtcccactattttcaccattttgaggatttggtccccctattttaaaatctgacaattttggtc 1602882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 1602694 - 1602739
Alignment:
Q  112 ttttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||||||||  ||||||||||| ||||||||||| |||||    
T  1602694 ttttaaaatttgacagttttggtccctccatcaaatatttggtcta 1602739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 40609989 - 40609920
Alignment:
Q  56 gcttaactgcaattttgatcc-cctattttcatcattttgtaaaattggtccccctattttaaaatttga 124  Q
    |||||| |||| ||||| ||| ||||||||||  |||||  | |||||||||||||||||||||||||||    
T  40609989 gcttaattgcagttttggtcctcctattttcacaattttacagaattggtccccctattttaaaatttga 40609920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 20896286 - 20896453
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatat--tttgtcta-----------tatgata 164  Q
    |||||||||| ||||| | ||||||||| | ||||||||||||| || || |||||||||||||||| ||||  ||||||||           |||||||    
T  20896286 ctattttcataattttatgaaattggtcgcactattttaaaattcgataattttggtccctctatcacatataatttgtctaaaatattgtgatatgata 20896385  T
Q  165 tgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||||| |||||||||||||||||||||||||||   |||||||||||||||||||| |||||| |||||||    
T  20896386 tgtttt-aaatgaagtttttaaagaaattttgtt---acaatttcatcgatgttgatatttttctatcttca 20896453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 37327603 - 37327527
Alignment:
Q  81 ttttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  37327603 ttttcatcattttgcgaaattggtccccctattttaaaattggacaattttggtccctctatcaaattttttgtcta 37327527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 27567937 - 27567849
Alignment:
Q  56 gcttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||||| |||| ||||||||||||||||||||| ||| ||  |||||||||||||||||||||||| ||||  ||||||||||||||||    
T  27567937 gcttaattgcagttttgatcccctattttcatcttttcgtggaattggtccccctattttaaaattcgacagttttggtccctctatca 27567849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 44858148 - 44858056
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaat 147  Q
    ||||||| |||| ||||||||||| |||||| | ||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  44858148 ggcttaattgcagttttgatccccctatttttaccattttgcaaaat-ggtccccctattttaaaatttgacagttttggtccctctatcaaat 44858056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 29366684 - 29366581
Alignment:
Q  55 ggcttaactgcaattttgatccc-ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttg 153  Q
    ||||||| |||| ||||| |||| |||||||||||| |||| ||||||| | || ||||||||| ||||||||| |||||||  ||||||||||||||||    
T  29366684 ggcttaattgcagttttggtccctctattttcatcaatttgcaaaattgattcctctattttaatatttgacaattttggtcattctatcaaatattttg 29366585  T
Q  154 tcta 157  Q
    ||||    
T  29366584 tcta 29366581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 16492900 - 16492836
Alignment:
Q  88 cattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatatttt 152  Q
    ||||||||||||||||||||||||||| |||||| || || ||||||||||| ||||||||||||    
T  16492900 cattttgtaaaattggtccccctatttaaaaattcgataagtttggtccctccatcaaatatttt 16492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 37327296 - 37327383
Alignment:
Q  58 ttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||| |||| ||||||||||| |||||||| ||||||| | || ||||||||||||||||||||| ||||| ||||||| ||||||||    
T  37327296 ttaattgcagttttgatccccctattttcaccattttgcagaaatggtccccctattttaaaattcgacaattttggtctctctatca 37327383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 39751209 - 39751274
Alignment:
Q  89 attttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgt 154  Q
    |||||| |||||||||||||| |||||||||||  |||| |||||||| || ||||||||||||||    
T  39751209 attttgcaaaattggtccccccattttaaaattctacaattttggtccttccatcaaatattttgt 39751274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 4965359 - 4965435
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattt 151  Q
    |||||||||||| |||||||   ||||||||| | |||||||||| ||||||  ||||||||||| |||||||||||    
T  4965359 cccctattttcaacattttgcggaattggtccgcttattttaaaacttgacagttttggtccctcaatcaaatattt 4965435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 36742300 - 36742218
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtcc 136  Q
    ||||||| || |||||| |||||| ||||||||||| |||| ||||||||||||  ||||||||||||| |||  ||||||||    
T  36742300 ggcttaattgtaattttaatccccctattttcatcaatttgcaaaattggtccctatattttaaaatttaacagttttggtcc 36742218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 42055285 - 42055353
Alignment:
Q  57 cttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgaca 126  Q
    ||||| |||| ||||| ||||||||||| | ||||||||| ||||||| ||| |||||||||||||||||    
T  42055285 cttaattgcagttttggtcccctatttttaccattttgtagaattggt-cccttattttaaaatttgaca 42055353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 46303847 - 46303705
Alignment:
Q  101 tggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct-----------atatgatatgtttttaaatgaagtttttaaaga 189  Q
    |||||| |||||||||||||| ||||| |||||||||||||||| || |||| |||           || ||||||| ||||||||||||||||  ||||    
T  46303847 tggtcctcctattttaaaattcgacaattttggtccctctatcatatgttttatctaaaatattgtgatgtgatatg-ttttaaatgaagtttt--aaga 46303751  T
Q  190 -aattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
     |||||||||   ||| ||||||||||||||||||||||| ||||||||    
T  46303750 taattttgtt---acagtttcatcgatgttgatctttttctatcttcat 46303705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 3565680 - 3565600
Alignment:
Q  77 cctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    ||||||||||  |||||| |||||||||  |||| ||||| |||| ||||  ||||| ||||||||| |||||||||||||    
T  3565680 cctattttcactattttgcaaaattggtttccctgttttataattcgacagttttggaccctctatctaatattttgtcta 3565600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 17298693 - 17298740
Alignment:
Q  110 tattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||||||||||||| || || ||||||||||||||| |||||    
T  17298693 tattttaaaatttgacaactctgatctctctatcaaatatttggtcta 17298740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 23415960 - 23416068
Alignment:
Q  129 tttggtccctctatcaaatattttgtctata------tgatatgtt--tttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttga 220  Q
    ||||||||||| ||||||||||||||||| |      ||||||| |  ||||||||||||||||||  ||||||||||   | |||||||||||||||||    
T  23415960 tttggtccctcaatcaaatattttgtctaaaatactgtgatatgatgttttaaatgaagtttttaagaaaattttgtt---ataatttcatcgatgttga 23416056  T
Q  221 tctttttccatc 232  Q
      ||||||||||    
T  23416057 aatttttccatc 23416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 29366368 - 29366431
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccct 138  Q
    ||||||||||||  |||||| ||||||||||||| |||||||||||| || |  ||||||||||    
T  29366368 cccctattttcacaattttgcaaaattggtccccatattttaaaattcgataggtttggtccct 29366431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 44857847 - 44858000
Alignment:
Q  87 tcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtctata-----------tgatatgtttttaaat 175  Q
    ||||||||  |||||| ||||||||||| |||||| ||||| |||| |||||| ||||||||||| ||||| |           ||||||||||| ||||    
T  44857847 tcattttgcgaaattgatccccctattt-aaaattcgacaattttgttccctccatcaaatatttagtctaaaatattgtgatttgatatgtttt-aaat 44857944  T
Q  176 gaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatctt 234  Q
    |||||||| || |||||||||||   ||| ||| |||||| ||||| ||||||||||||    
T  44857945 gaagttttcaaggaaattttgtt---acagttttatcgatcttgatgtttttccatctt 44858000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 3565388 - 3565433
Alignment:
Q  76 ccctattttcatcattttgtaaaattggtccccctattttaaaatt 121  Q
    |||||||| |||| |||||| |||||||||| ||||||||||||||    
T  3565388 ccctatttacatctttttgtgaaattggtcctcctattttaaaatt 3565433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 27567323 - 27567388
Alignment:
Q  55 ggcttaactgcaattttgatccc-ctattttcatcattttgtaaaattggtccccctattttaaaa 119  Q
    ||||||| |||||||||  |||| ||||||||||  ||||||||||||| ||||||| ||||||||    
T  27567323 ggcttaattgcaatttttgtcccactattttcatttttttgtaaaattgatccccctgttttaaaa 27567388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 15061759 - 15061593
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta-----------tatgat 163  Q
    |||||||||| ||||||||| |||||||||| |||||||||| |||| ||||| ||||||| |||| |||||||||| |||||           ||||||    
T  15061759 cccctatttttatcattttgcaaaattggtctccctattttagaatt-gacaattttggtctctctgtcaaatattt-gtctagaatattgtgatatgat 15061662  T
Q  164 atgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    ||||||| ||||||||||||||| |||||||||||   ||||||||||||||||||||| |||| ||||||||    
T  15061661 atgtttt-aaatgaagtttttaaggaaattttgtt---acaatttcatcgatgttgatcattttacatcttca 15061593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 3505071 - 3505246
Alignment:
Q  55 ggcttaactgcaattttgatcccctattttcatcattttgtaaaattggtcccc-ctattttaaaatttgacaactttggtccctctatcaaatattttg 153  Q
    ||||||| |||||||||| | |||||||||||| ||||||  |||||||||||| | ||| |||||||  |||| ||||| |||||||||||||||| ||    
T  3505071 ggcttaattgcaattttggtgccctattttcatgattttgcgaaattggtccccaccattgtaaaattcaacaattttggcccctctatcaaatattgtg 3505170  T
Q  154 tctatatgatatgtttttaaatgaagtttttaaaga-aattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
       ||||||||| |||||||||| || ||||||||| |||||||||   ||||||| |||||||||||| ||||| ||||||||    
T  3505171 ---atatgatat-tttttaaatggag-ttttaaagagaattttgtt---acaattttatcgatgttgattttttttcatcttca 3505246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 9388811 - 9388879
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatc 143  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  9388811 cccctatttttatctttttgtaaaattggtccccctattttaaaattcgacaattttagtccctctatc 9388879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 26767638 - 26767718
Alignment:
Q  76 ccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||||||||||  ||||||||||||||   ||||||||||||    
T  26767638 ccctattttcaccattttgtaaaattgttcccc-tattttaaaatttgacagttttggtccctctatattatattttgtcta 26767718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 7191862 - 7191962
Alignment:
Q  57 cttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct 156  Q
    ||||| ||||| |||| ||||||||||| |||||||||  |||| ||||||| |||||||||||| ||||  |||||||||| |||| || |||||||||    
T  7191862 cttaattgcaagtttggtcccctattttaatcattttgccaaataggtccccatattttaaaattcgacagttttggtccctttatctaaaattttgtct 7191961  T
Q  157 a 157  Q
    |    
T  7191962 a 7191962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 43671009 - 43670840
Alignment:
Q  74 tcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta-----------tatga 162  Q
    |||||||||||||||||||||  |||||| || |  |||||||||||| ||||| |||| ||||||||| | ||||||||||||           ||  |    
T  43671009 tcccctattttcatcattttgcgaaattgttctct-tattttaaaattcgacaattttgatccctctattacatattttgtctaaaatattgtgatacta 43670911  T
Q  163 tatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
    ||||||||||| |||||||||||| | |||||||||   |||||||||||||||||||| |||||| ||||||||    
T  43670910 tatgtttttaa-tgaagtttttaagggaattttgtt---acaatttcatcgatgttgatatttttctatcttcat 43670840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 12857561 - 12857501
Alignment:
Q  97 aaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||| |||||||||||||| ||||| ||||||| ||||||||||| |||||||||    
T  12857561 aaattggtcctcctattttaaaattggacaattttggtctctctatcaaattttttgtcta 12857501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 15061448 - 15061528
Alignment:
Q  57 cttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtcc 136  Q
    ||||| |||| |||||||| || |||||||||||||||||| ||||| ||| |||||||||||||||||||  ||||||||    
T  15061448 cttaattgcagttttgatctccatattttcatcattttgtagaattgatcctcctattttaaaatttgacagttttggtcc 15061528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 43344795 - 43344879
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccct 138  Q
    ||||||| |||||||||| || || ||||||||| |||||| | |||||||||||||||||||||||| ||||  ||||||||||    
T  43344795 ggcttaattgcaattttggtctccatattttcattattttgcagaattggtccccctattttaaaattcgacaggtttggtccct 43344879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 41666379 - 41666320
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccc 137  Q
    |||||||||||||||| |||||||| | |||||||||||||||| ||||  |||||||||    
T  41666379 ctattttcatcattttataaaattgattcccctattttaaaattcgacagttttggtccc 41666320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 43344987 - 43344914
Alignment:
Q  157 atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatctt 234  Q
    |||||||||||||| |||||||||||||||| ||| ||||||   |||||||||| |||||||||  |||||||||||    
T  43344987 atatgatatgtttt-aaatgaagtttttaaaaaaaatttgtt---acaatttcattgatgttgattgttttccatctt 43344914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 7192175 - 7192110
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctct 140  Q
    |||||||||||||| || |||  ||||| |||||||||||||||||| ||||  ||||||||||||    
T  7192175 cccctattttcatctttgtgtggaattgatccccctattttaaaattcgacagttttggtccctct 7192110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 38276087 - 38275986
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttg 153  Q
    ||||||| |||| ||||| ||||| |||||  |||||||||  ||||||||||   ||||||||||||  |||| |||||||||| |||||||||| |||    
T  38276087 ggcttaattgcagttttggtccccctatttatatcattttgcgaaattggtcct--tattttaaaattcaacaattttggtccctttatcaaatatgttg 38275990  T
Q  154 tcta 157  Q
    ||||    
T  38275989 tcta 38275986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 44166676 - 44166602
Alignment:
Q  157 atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    |||||||||||||| |||| |||||||||| | |||||||||||||    || || ||||||||||||||| ||||||||    
T  44166676 atatgatatgtttt-aaataaagtttttaagggaattttgttgcaa----tttatggatgttgatcttttttcatcttca 44166602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 43670693 - 43670790
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattt 151  Q
    ||||||| |||| ||||| ||||| ||||||||   ||||| ||||||||||| |||||||||||||| |||    |||||||||| |||| ||||||    
T  43670693 ggcttaattgcagttttggtccccctattttcactcttttgcaaaattggtcctcctattttaaaattcgactgtcttggtccctccatcatatattt 43670790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 44518102 - 44518065
Alignment:
Q  110 tattttaaaatttgacaactttggtccctctatcaaat 147  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  44518102 tattttaaaatttgacaactttggctcctctatcaaat 44518065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 4838111 - 4838036
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgt 154  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  4838111 tattttcatcattttgcgaaattggtccccctattttaaaagttgacaattttggtccatctatcaaatattttgt 4838036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 6196721 - 6196799
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||||||||   |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  6196721 tattttcatcattttacgaaattggtccccctattttaaaattcaacaattttggtccctctatcaaatattttgtcta 6196799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 2237051 - 2236884
Alignment:
Q  76 ccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta------tatgatatg--- 166  Q
    |||||||||||||||||||  |||||||||||| || ||| |||||| | || |||| ||||||||||| ||||||||||||      |||||||||       
T  2237051 ccctattttcatcattttgcgaaattggtccccataattttaaattttataattttgatccctctatcacatattttgtctaaaatattatgatatgata 2236952  T
Q  167 -tttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
      ||||||||||||||||| ||||| |||| ||   ||||||| |||||||||| |||||||| ||||||||    
T  2236951 tattttaaatgaagttttt-aagaatttttttt---acaattttatcgatgttggtctttttctatcttcat 2236884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 28587927 - 28587862
Alignment:
Q  75 cccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctct 140  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||| ||||  ||||||||||||    
T  28587927 cccctattttcaccattttgtaaatttggcccccctattttaaaattcgacagttttggtccctct 28587862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 10244587 - 10244519
Alignment:
Q  89 attttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||| |||||||||||||||||||||||||||||||  |||||| ||| |||||  |||||||||||    
T  10244587 attttgcaaaattggtccccctattttaaaatttgacagttttggttcctatatcatttattttgtcta 10244519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 33819827 - 33819988
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta-----------tatgatatgt 167  Q
    |||||| |||||||||| |||| ||| ||| |||||||||||| | ||| |||| | | ||||||||||||||||||||           || |||||||    
T  33819827 tatttttatcattttgtgaaatcggttccc-tattttaaaattcggcaattttgtttcatctatcaaatattttgtctaaaatattgtgatacgatatgt 33819925  T
Q  168 ttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatctt 234  Q
    ||| ||||||||||||||| | |||||| ||   |||||||||||||| ||||||||||||||||||    
T  33819926 ttt-aaatgaagtttttaagggaattttatt---acaatttcatcgatattgatctttttccatctt 33819988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 6198146 - 6198103
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatt 121  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  6198146 ctattttcaccattttgtagaattggtccccctattttaaaatt 6198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 28587612 - 28587702
Alignment:
Q  55 ggcttaactgcaattttgatcccc-tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    ||||||| |||| ||||| ||||| | |||||| ||||||| ||| |||||||||||||||||||||| ||||  ||| ||||||| ||||    
T  28587612 ggcttaattgcagttttggtccccctgttttcaccattttgcaaatttggtccccctattttaaaattcgacagttttcgtccctccatca 28587702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 24800180 - 24800116
Alignment:
Q  80 attttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||||| |||||||  ||||| |||| |||||||||||||||||||||| |||||| ||| ||||    
T  24800180 attttcttcattttacaaaatgggtcaccctattttaaaatttgacaacgttggtctctccatca 24800116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 10244288 - 10244382
Alignment:
Q  58 ttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatatttt 152  Q
    |||| |||| ||||||||  ||||||||||| | |||| ||||||||| |||||||||||| || ||||  |||| ||| || |||| |||||||    
T  10244288 ttaattgcagttttgatctactattttcatcttgttgtgaaattggtctccctattttaaagttcgacagttttgatccatccatcatatatttt 10244382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 13639673 - 13639595
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||||||||| ||||||||||||||||||||||||||  | || |||||||||||||||| ||||||||||||    
T  13639673 tattttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtccctctatcatatattttgtcta 13639595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 5548110 - 5548188
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||| || ||||||| ||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  5548110 tatttttattattttgttaaattggtccctctattttaaaattcgacaattttggtccctttatcaaatattttgtcta 5548188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 30223794 - 30223883
Alignment:
Q  68 ttttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||||||| ||||||||||||||  ||||||||||| | ||||| ||||| ||||  |||||||| ||||||||||||||||||||    
T  30223794 ttttgatccccttttttcatcattttgcgaaattggtccctcaatttttaaattcgacagttttggtccatctatcaaatattttgtcta 30223883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 39741576 - 39741411
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct-----------atatgatatg 166  Q
    |||||||||||||||||| || ||| || || |||||||||||| || || |||| |||||||||||||||||||||||           ||||||||||    
T  39741576 ctattttcatcattttgtgaatttgatctccttattttaaaattcgataattttgatccctctatcaaatattttgtctaaaatattgtgatatgatatg 39741477  T
Q  167 tttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
     |||||||||||||||| || | ||||| |||   | |||||||||||||||||||||||| ||||||||    
T  39741476 -ttttaaatgaagttttcaagggaatttcgtt---ataatttcatcgatgttgatcttttttcatcttca 39741411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 3577571 - 3577641
Alignment:
Q  87 tcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    |||||||| ||||||||||  |||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  3577571 tcattttgcaaaattggtcttcctattttaaaattcgacaattttggtacctctatcaaatattttgtcta 3577641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 237
Target Start/End: Original strand, 13360993 - 13361170
Alignment:
Q  68 ttttgatccc-ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtct---------- 156  Q
    |||||||||| |||||||||| ||||||  |||||| || || |||||||||||| ||||| |||| || |||||||| |||||||||||              
T  13360993 ttttgatccctctattttcattattttgcgaaattgatctccttattttaaaattcgacaattttgatctctctatcacatattttgtctaaaatattgt 13361092  T
Q  157 -atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
     ||| |||||| ||||||||||| ||||||||| |||||||||   |||||||||||||| || ||||||||| ||||||||    
T  13361093 gatacgatatg-ttttaaatgaaatttttaaaggaattttgtt---acaatttcatcgatattaatctttttctatcttcat 13361170  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 14626446 - 14626370
Alignment:
Q  157 atatgatatgtttttaaatgaagtttttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttcat 237  Q
    |||||||||||||| ||||||||||||||||| |||||||||   | ||||||||||||||||||||||| | ||||||||    
T  14626446 atatgatatgtttt-aaatgaagtttttaaaggaattttgtt---ataatttcatcgatgttgatcttttcctatcttcat 14626370  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 19895517 - 19895452
Alignment:
Q  58 ttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttg 123  Q
    |||| |||||||||||| |||||||||||||||||||  |||||| |||| |||||||||||||||    
T  19895517 ttaattgcaattttgattccctattttcatcattttgcgaaattgatccctctattttaaaatttg 19895452  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 3577834 - 3577786
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttgaca 126  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  3577834 ctattttcaccattttgaagaattggtccccctattttaaaatttgaca 3577786  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 30224114 - 30224025
Alignment:
Q  56 gcttaactgcaattttgatcccct-attttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatca 144  Q
    |||||| |||| |||||||||||| ||||| ||||||||| | |||||||||||||||| ||||| | ||||  |||| |||||| ||||    
T  30224114 gcttaattgcagttttgatccccttatttttatcattttgcataattggtccccctattgtaaaaatcgacagttttgatccctccatca 30224025  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 42552560 - 42552608
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttgaca 126  Q
    ||||||||| ||||||||| ||||||||||  |||||||||||| ||||    
T  42552560 ctattttcaccattttgtagaattggtccctgtattttaaaattcgaca 42552608  T

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Target: scaffold0062 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 20253 - 20403
Alignment:
Q  88 cattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtctata------tgatatgtttttaaatgaagtt 181  Q
    ||||||| ||||||| || || |||||| ||||| || || |||||||| |||||||||||||||||||| |      ||||||||||| ||||||| ||    
T  20253 cattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtctaaaatattgtgatatgtttt-aaatgaaatt 20351  T
Q  182 tttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    || || |||||||||||   ||||||||||| |||||||||||||||||||||||    
T  20352 ttcaatgaaattttgtt---acaatttcatcaatgttgatctttttccatcttca 20403  T

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Target: scaffold0062; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 30421 - 30571
Alignment:
Q  88 cattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtctata------tgatatgtttttaaatgaagtt 181  Q
    ||||||| ||||||| || || |||||| ||||| || || |||||||| |||||||||||||||||||| |      ||||||||||| ||||||| ||    
T  30421 cattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtctaaaatattgtgatatgtttt-aaatgaaatt 30519  T
Q  182 tttaaagaaattttgttgcaacaatttcatcgatgttgatctttttccatcttca 236  Q
    || || |||||||||||   ||||||||||| |||||||||||||||||||||||    
T  30520 ttcaatgaaattttgtt---acaatttcatcaatgttgatctttttccatcttca 30571  T

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Target: scaffold0136 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 32349 - 32419
Alignment:
Q  55 ggcttaactgcaattttgatcccctattttcatcattttgtaaaattggtccccctattttaaaatttgaca 126  Q
    ||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||||||    
T  32349 ggcttaattgcaattttgatcccctattt-catcattttgcataattggtccccctattttaaaacttgaca 32419  T

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Target: scaffold0122 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 17836 - 17758
Alignment:
Q  79 tattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 157  Q
    ||||||||||||||||||||||||||| | || ||||||||||  |||| |||||||  ||||||||||||||||||||    
T  17836 tattttcatcattttgtaaaattggtctctctgttttaaaattccacaattttggtcattctatcaaatattttgtcta 17758  T

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Target: scaffold0633 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 8850 - 8909
Alignment:
Q  78 ctattttcatcattttgtaaaattggtccccctattttaaaatttgacaactttggtccc 137  Q
    |||||||||||||||| |||||||| | |||||||||||||||| ||||  |||||||||    
T  8850 ctattttcatcattttataaaattgattcccctattttaaaattcgacagttttggtccc 8909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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