View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_67 (Length: 242)
Name: NF4285_low_67
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 11545726 - 11545953
Alignment:
| Q |
1 |
taatgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggac--gta |
98 |
Q |
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| T |
11545726 |
taatgtggaagatattactgatatcaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtgta |
11545825 |
T |
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| Q |
99 |
gttgttcattttgttgcttaagcaaacaaaataaatcaacgcttttctttgtattatgttataattaagtttgcttgacattttaaatcgtataataata |
198 |
Q |
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| T |
11545826 |
gttgttcattttgttgcttaagcaaacaaaataaatcaatgcttttctttgtattatgtta----taagtttgcttgacattttaaatcgtataataata |
11545921 |
T |
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| Q |
199 |
catgactttggtcttttttctatgaatgatga |
230 |
Q |
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| T |
11545922 |
catgactttggtcttttttctatgaatgatga |
11545953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 11559190 - 11559292
Alignment:
| Q |
35 |
ttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaataaat |
134 |
Q |
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| T |
11559190 |
ttggcatctactattctaaatgtgaaggatgctcttatgagttctatttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaataaat |
11559289 |
T |
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| Q |
135 |
caa |
137 |
Q |
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||| |
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| T |
11559290 |
caa |
11559292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 11559350 - 11559416
Alignment:
| Q |
164 |
taagtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctatgaatgatga |
230 |
Q |
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| T |
11559350 |
taagtttgcttgacattttaaatcttataataatacatgactttggtcttttctctatgaatgatga |
11559416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 20915590 - 20915470
Alignment:
| Q |
15 |
ttactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtagttgttcattttgttg |
114 |
Q |
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| T |
20915590 |
ttactgatatcaacacccaattggcaactactattctgcaagtga-ggatgcttttttgagctatatttaacaatttggaa-tagttgttcattttgttg |
20915493 |
T |
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| Q |
115 |
cttaagcaaacaaaataaatcaa |
137 |
Q |
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| T |
20915492 |
cttaagcaaacaaaataaatcaa |
20915470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 20916510 - 20916589
Alignment:
| Q |
15 |
ttactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttgga |
94 |
Q |
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|||||||||| ||||| || ||||||||||||||||| | |||||||||||||| ||||||| ||||||||| |||||| |
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| T |
20916510 |
ttactgatatgaacacccaattggcaactactattctgcaagtgaaggatgctctcatgagctatatttaacagtttgga |
20916589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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