View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_68 (Length: 241)
Name: NF4285_low_68
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 43529058 - 43529264
Alignment:
| Q |
29 |
ttctcaatgcagtgcacatggcttgcttcagcacactgcaccttaaacaaacaaatagcctacagagtgtctctaatagctggt-----------tctgt |
117 |
Q |
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| T |
43529058 |
ttctcaatgcagtgcacatggcttgcttcagcacactacaccttaaacaaacaaatagcctacagagtgtctctaatagctggttccgttatggttctgt |
43529157 |
T |
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| Q |
118 |
ataaaactacataatcagatgaatgattaaaccaataatttatatcagtagagccatcaatatacttgacataacaagcgctgctaattgtgaacggtag |
217 |
Q |
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| T |
43529158 |
ataaaactacataatcagatgaatgattaaaccaataattgatatcagtagagccatcaatatacttgatataacaagcgctgctaattgtgaacggtag |
43529257 |
T |
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| Q |
218 |
tgttaat |
224 |
Q |
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||||||| |
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| T |
43529258 |
tgttaat |
43529264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 40389769 - 40389851
Alignment:
| Q |
128 |
ataatcagatgaat-gattaaaccaataatttatatcagtagagccatcaatatacttgacataacaagcgctgctaattgtg |
209 |
Q |
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| T |
40389769 |
ataatcagatggattgattaagccaataattgagatcattagagccatcaatatacttgatataataagggctgctaactgtg |
40389851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 40389318 - 40389361
Alignment:
| Q |
47 |
tggcttgcttcagcacactgcaccttaaacaaacaaatagccta |
90 |
Q |
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| T |
40389318 |
tggcatgcttcagcacactacaccttaaacaaacaaatagccta |
40389361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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