View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4285_low_7 (Length: 570)
Name: NF4285_low_7
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 6 - 552
Target Start/End: Original strand, 3495571 - 3496117
Alignment:
| Q |
6 |
aggagcacagatggagggattaagagttaggttgggcactccaccagatgtgcttccgttggctacagtgacagcttgatttgccaatgtacgaaaaatc |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3495571 |
aggaccactgatggagggattaagagttaggttgggcactccaccagatgtgcttccgctggctacagtgacagcttgatttgccaatgtacgaaaaatc |
3495670 |
T |
|
| Q |
106 |
ttagcataatgccgcaaccgagtgattaaatgtgatgccagatcaataactgaatcaacataggcctacataatatattgaaacagttatgagatgtata |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3495671 |
ttagcataatgccgcaaccgagtgatcaaatgtgatgccagatcaataactgaatcaacataggcctacataatatattgaaacagttatgagatgtata |
3495770 |
T |
|
| Q |
206 |
tacagttaaatgttaaacagaatcatagcaacaccaactcattgaaagaaaggaggcaatcaaagggttacaaatacaaacacatttaataggttggtag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3495771 |
tacagttaaatgttaaacagaatcatagcaacaccaactcattgaaagaaaggaggcaatcagagggttacaaatacaaacacatttaataggttggtag |
3495870 |
T |
|
| Q |
306 |
atatatttatctatatggtgtattatatttgcnnnnnnntaaattattttaccagtgtggatataaatagaagtatgtatggaaaaaactataaactccc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3495871 |
atatatttatctatatggtgtattatatttgcaaaaaaataaattattttaccagtgtggatataaatagaagtatgtatggaaaaaactataaactccc |
3495970 |
T |
|
| Q |
406 |
catcaaacaaaaaactataattccaatttacaattgtaaacaaacaaacctgaatacatggagttagttcaggttcaacagccatttcttccatgtcaaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3495971 |
catcaaacaaaaaactataattccaatttacaattgtaaacaaacaaacctgaatacatggagttagttcaggttcaacagccatttcttccatgtcaaa |
3496070 |
T |
|
| Q |
506 |
gttggatagtatctcctcggatgcctgccatggatcaggcaataaag |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3496071 |
gttggatagtatctcctcggatgcctgccatggatcaggcaataaag |
3496117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 71 - 385
Target Start/End: Original strand, 3509789 - 3510094
Alignment:
| Q |
71 |
cagtgacagcttgatttgccaatgtacgaaaaatcttagcataatgccgcaaccgagtgattaaatgtgatgccagatcaataactgaatcaacataggc |
170 |
Q |
| |
|
||||| |||||||| |||||| ||||||| ||| ||||||||| ||||||||| |||| ||| | | || ||||||| |||||||||||||||||| |
|
|
| T |
3509789 |
cagtggcagcttgacttgccagtgtacgacaaaatttagcataacaccgcaaccgtgtgaaaaaagataaagctagatcaagaactgaatcaacataggc |
3509888 |
T |
|
| Q |
171 |
ctacataatatattgaaacagttatgagatgtatatacagttaaatgttaaacagaatcatagcaacaccaactcattgaaagaaaggaggcaatcaaag |
270 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||| |||||||||| ||| |
|
|
| T |
3509889 |
ctacgtaatat--------------gagttgtatatacagttaaatgtttaacaaaatcaaagcaacaccaactcactgaaagaagggaggcaatcgaag |
3509974 |
T |
|
| Q |
271 |
ggttacaa-----atacaaacacatttaataggttggtagatatatttatctatatggtgtattatatttgcnnnnnnntaaattattttaccagtgtgg |
365 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||| | |
|
|
| T |
3509975 |
ggttacattacatatagaaacacatttaataggttggtagatatatttatctatacggtgtattatacatgtaacaatataagttattttaccagtgcga |
3510074 |
T |
|
| Q |
366 |
atataaatagaagtatgtat |
385 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
3510075 |
atataaatacaagtatgtat |
3510094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 491
Target Start/End: Original strand, 3510206 - 3510266
Alignment:
| Q |
430 |
aatttacaattgtaaacaaacaaacctgaatacatggagttagttcaggttcaacagccatt |
491 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
|
|
| T |
3510206 |
aatttacaactgtaa-caaacaaacctgaatacatgaatttaatgcaggttcaacagccatt |
3510266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University