View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_71 (Length: 237)
Name: NF4285_low_71
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15201518 - 15201738
Alignment:
| Q |
1 |
gacctacatgtgcagaactgcaactcagacgttaatggcttctggaattagattcagttctcccactttggcttcagctatggttgatattgtccctgct |
100 |
Q |
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| T |
15201518 |
gacctacatgtgcagaactgcaactcagacgttaatggcttctggaattagattcagttctcctactttggcttcagctatggttgatattgtccctgct |
15201617 |
T |
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| Q |
101 |
tttaccttcatacttgctataatttcaaggtatgttatttttattttatggttgaaattacaaggtttgttgttttttggattaaaatgcgattaattgc |
200 |
Q |
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| T |
15201618 |
tttaccttcatacttgctataatttcaaggtatgttatttttattttatggttgaaattacaaggtttgttgttttttggattaaaatgcaattaattgc |
15201717 |
T |
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| Q |
201 |
atcataaagtcagcaacaaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
15201718 |
atcataaagtcagcaacaaag |
15201738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 15208468 - 15208683
Alignment:
| Q |
4 |
ctacatgtgcagaactgcaactcagacgttaatggcttctggaattagattcagttctcccactttggcttcagctatggttgatattgtccctgctttt |
103 |
Q |
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| T |
15208468 |
ctacttgtgcagaactgcaactcagacgttaatgacttctggaattaaattcagttctcctgcgttggcttcagctattgttaatcttgtccctgctttt |
15208567 |
T |
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| Q |
104 |
accttcatacttgctataatttcaaggtatgttatttttattttatggttgaaattacaaggtttgtt-gttttttggattaaaatgcgattaattgcat |
202 |
Q |
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| T |
15208568 |
accttcatacttgctataatttcaaggtatgttgtttttattttatggtttaaattacaaggtttgttctttttttggattagaatgcatttacttgcat |
15208667 |
T |
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| Q |
203 |
cataaagtcagcaaca |
218 |
Q |
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| T |
15208668 |
cataaagtcagcaaca |
15208683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 15189598 - 15189687
Alignment:
| Q |
42 |
ctggaattagattcagttctcccactttggcttcagctatggttgatattgtccctgcttttaccttcatacttgctataatttcaaggt |
131 |
Q |
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| T |
15189598 |
ctggaattggatatagctctcccacattggcatctgctatggttgaccttgtccctgctttcacgttcatacttgctgtaatttcaaggt |
15189687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 15179973 - 15180011
Alignment:
| Q |
93 |
tccctgcttttaccttcatacttgctataatttcaaggt |
131 |
Q |
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| T |
15179973 |
tccctgcttttaccttcatacttgctttaatttcaaggt |
15180011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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