View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_73 (Length: 233)
Name: NF4285_low_73
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 7165300 - 7165098
Alignment:
| Q |
18 |
gaattagggttattggaacgtagtgaaagccgaattgaatcgatgagcttagcgcggttaaggtagtgagtgatttttgtgggaaaagggtcacgacgac |
117 |
Q |
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| T |
7165300 |
gaattagggttattggaacgtagtgaaagccgaattgaatcgatgagcttagcacggttaaggtagtgagtgatttttgtgggaaaagggtcacgacgac |
7165201 |
T |
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| Q |
118 |
gtgtatagaaacgaatttgaatgcgaaattgaaatgctggtttgttgaattcacgaaaaatgggaatcaaattcattgggattaatcagagtttagaatg |
217 |
Q |
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| T |
7165200 |
gtgtatagaaacgaatttgaatgcgaaattgaaatgctggtttgttgaattcacgaaaaatgggaatcaaattcattgggatttatcagagtttagaatg |
7165101 |
T |
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| Q |
218 |
atg |
220 |
Q |
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| T |
7165100 |
atg |
7165098 |
T |
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