View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_78 (Length: 226)
Name: NF4285_low_78
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_78 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37558175 - 37557950
Alignment:
| Q |
1 |
cgtcttttaatttacaatacctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgta |
100 |
Q |
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| T |
37558175 |
cgtcttttaatttacaatacctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgta |
37558076 |
T |
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| Q |
101 |
ggtatgtgactccatacatccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcata |
200 |
Q |
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| T |
37558075 |
ggtatgtgactccatacatccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcata |
37557976 |
T |
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| Q |
201 |
ccttggaagtgcattttccccagcaa |
226 |
Q |
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| T |
37557975 |
ccttggaagtgcattttccccagcaa |
37557950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 15504394 - 15504187
Alignment:
| Q |
19 |
acctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtatgtgactccataca |
118 |
Q |
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| T |
15504394 |
acctgatctgcatgcatctttaccacaaactttttgaatatatcaaaatttgattgttgcattagatcatctgatagacgaaggtatgttactccataca |
15504295 |
T |
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| Q |
119 |
tccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttggaagtgcattttc |
218 |
Q |
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| T |
15504294 |
tccgaagttttggagggccgtctttgttgaccccttgtggtcttgcattcagtatgatttggttataagctgttgcatcataccttgaaagtgcattttc |
15504195 |
T |
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| Q |
219 |
cccagcaa |
226 |
Q |
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| T |
15504194 |
gccagcaa |
15504187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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