View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_8 (Length: 566)
Name: NF4285_low_8
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 50096962 - 50096434
Alignment:
| Q |
19 |
tcacatatgttagtttctcttaagacctctttactttgtaatattttttaaaatttctaaaggggtgttcattttaatttattagtaacaagatctttca |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50096962 |
tcacatatgttagtttctcttaagacgtctttactttgtaatatttttttaaatttctaaaggggtgttcattttaatttgttagtaacaagatctttca |
50096863 |
T |
|
| Q |
119 |
aaacaataaaatgctaataagaaaagtgaaactcttaaaatgaccaatcataagggagagaagatgaaatattagaaataataaaattagaaaagtcttc |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50096862 |
aaacaataaaatgctaataagaaaagtgaaactcttaaaatgaccgaccataagggagagaagatgaaatattagaaataataaaattagaaaagtcttc |
50096763 |
T |
|
| Q |
219 |
atcaacatatctcagttaacaggaattatgcattgttatatgtaaagatccaaatatcctacttattaaccttaaaagatgaattttaactattaaacta |
318 |
Q |
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|||| |||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
50096762 |
atcagcatatctcagttgacaggaactatgcattgttatatgtaaggattcaaatatcctacttattaaccttaaaagatgaattctaactattaaatta |
50096663 |
T |
|
| Q |
319 |
cttgacaaaataaaataaaaacgttttcatggagtaaacatggtgtaagttatttccttttctttgttatgatgtgtgtagcaattttgatttatcactc |
418 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50096662 |
cttgacaaaataaaataaaaacgttttcatggagtaaacatagtgtaagttatttccttttctttgttatgatgtgtgtagcaattttgatttatcactc |
50096563 |
T |
|
| Q |
419 |
ttc-aaagcacgggaggtccaaattgccgccaagatactacatacaagcataggattgcaaaatcatgtgatgtcaagtcattcaaaccaattcattctt |
517 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | || |
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| T |
50096562 |
ttcaaaagcacgggaggtccaaattgccgccaagatactacatacaagcataggattgcaaaatcatgtgatgtcaaggcagtcaaaccaattcaatttt |
50096463 |
T |
|
| Q |
518 |
ttttcagtgataaatgctagtatgttaatt |
547 |
Q |
| |
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||||||||||||||| ||| |||||||||| |
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| T |
50096462 |
ttttcagtgataaat-ctaatatgttaatt |
50096434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 12772143 - 12772202
Alignment:
| Q |
278 |
tacttattaaccttaaaagatgaattttaactattaaactacttgacaaaataaaataaa |
337 |
Q |
| |
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|||||||| |||||||||| |||||| |||| ||||||||||||||||||| ||||||| |
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|
| T |
12772143 |
tacttattcaccttaaaaggtgaattctaaccattaaactacttgacaaaactaaataaa |
12772202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 922691 - 922754
Alignment:
| Q |
274 |
atcctacttattaaccttaaaagatgaattttaactattaaactacttgacaaaataaaataaa |
337 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||| |||||| |||||| |||||||| |
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|
| T |
922691 |
atcctacttattaaccttaaaaagtgaattctatctattatactactgaacaaaaaaaaataaa |
922754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 9410336 - 9410290
Alignment:
| Q |
292 |
aaaagatgaattttaactattaaactacttgacaaaataaaataaaa |
338 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||| |||| |
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|
| T |
9410336 |
aaaaggtgaattttaactactaaactacttgacaaaaaaaaaaaaaa |
9410290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 10207717 - 10207771
Alignment:
| Q |
279 |
acttattaaccttaaaagatgaattttaactattaaactacttgacaaaataaaa |
333 |
Q |
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|
||||||| |||||| |||||||||| || |||||||||||| |||||||| |||| |
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|
| T |
10207717 |
acttattcaccttataagatgaattctagctattaaactacctgacaaaaaaaaa |
10207771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 1436204 - 1436245
Alignment:
| Q |
290 |
ttaaaagatgaattt-taactattaaactacttgacaaaata |
330 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
1436204 |
ttaaaaaatgaatttctaactattaaactacttgacaaaata |
1436245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 8493300 - 8493345
Alignment:
| Q |
278 |
tacttattaaccttaaaagatgaattttaactattaaactacttga |
323 |
Q |
| |
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|||||||| |||||||||| |||||| || |||||||||||||||| |
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| T |
8493300 |
tacttattcaccttaaaaggtgaattctagctattaaactacttga |
8493345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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