View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4285_low_84 (Length: 202)
Name: NF4285_low_84
Description: NF4285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4285_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 4554268 - 4554095
Alignment:
| Q |
14 |
atcaaaataaatcataactccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggc |
113 |
Q |
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| T |
4554268 |
atcaaaataaatcataactccccaattaattttcttcagaaccaacgtcaaattaactatcttgtacaattttagttctcttcttgtttgttgccttggc |
4554169 |
T |
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| Q |
114 |
atatgcaaattttagaaaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgttctggttgtttt |
187 |
Q |
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| T |
4554168 |
agttgcaaattttagaaaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgttcttgttgtttt |
4554095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 17494923 - 17494770
Alignment:
| Q |
14 |
atcaaaataaatcataactccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggc |
113 |
Q |
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| T |
17494923 |
atcaaaatagatcctaacttcccaatttattttcttcagaaccaaaatcaaattaattatcctatacagttttatttctcttcttatttgttgtcttggt |
17494824 |
T |
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| Q |
114 |
atatgcaaattttagaaaatacaatgaagtttgttgtggtagtttttcaaatcc |
167 |
Q |
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| T |
17494823 |
cgatgaaaattttagaaaatacaatgaagcttgttgtgatggttttccaaatcc |
17494770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 37874557 - 37874700
Alignment:
| Q |
33 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggcatatgcaaattttagaaaa |
132 |
Q |
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| T |
37874557 |
ccccaatttatttccttcagaaccaaaatcaaattaattatcctgtacaattttatttctcttcttgtttgttgtattggccgatgcaaatttcagaaga |
37874656 |
T |
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| Q |
133 |
tacaatgaagtttgttgtggtagtttttcaaatccgaatttgtt |
176 |
Q |
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| T |
37874657 |
taaaatgaagcttgttgtggtgatttttcagattcgaatatgtt |
37874700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 9574173 - 9574316
Alignment:
| Q |
33 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggcatatgcaaattttagaaaa |
132 |
Q |
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| T |
9574173 |
ccccaatttattttcttcagaaccaaaatcaaattaattatcctgtgcaattttatttctcttcttgtttgttgtattggccgatgcaaatttcagaaga |
9574272 |
T |
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| Q |
133 |
tacaatgaagtttgttgtggtagtttttcaaatccgaatttgtt |
176 |
Q |
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| T |
9574273 |
taaaatgaagtttgttgtggtgatttttcatatccgaatctgtt |
9574316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 5276993 - 5277131
Alignment:
| Q |
33 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggcatatgcaaattttagaaaa |
132 |
Q |
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| T |
5276993 |
ccccaatttattttcttcagaaccaaaatcaaattaattatcctgtgcaattttatttctcttcttgtttgttgtattggccgatgcaaatttcagaaaa |
5277092 |
T |
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| Q |
133 |
tacaatgaagtttgttgtggtagtttttcaaatccgaat |
171 |
Q |
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| T |
5277093 |
taaaatgaagcttgttgtggtgatttttcagatccgaat |
5277131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 55159626 - 55159478
Alignment:
| Q |
33 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttc-----tcttcttgtttgttgccttggcatatgcaaatttta |
127 |
Q |
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| T |
55159626 |
ccccaatttatttctttcagaaccaaaatcaaattaattatcctatacaattttgtttctcttatcttcttgtttgttgtattggccgatgcaaatttca |
55159527 |
T |
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| Q |
128 |
gaaaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgtt |
176 |
Q |
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||| ||| ||||||| |||||||||| ||||||| ||| |||| |||| |
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| T |
55159526 |
gaagataaaatgaagcttgttgtggtgatttttcagatctgaatctgtt |
55159478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 47523622 - 47523683
Alignment:
| Q |
14 |
atcaaaataaatcataactccccaattaatttccttcagaaccaacgtcaaattaactatcc |
75 |
Q |
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| T |
47523622 |
atcaaaataaatcctaactctccaatttatttccttgagaatcaaaatcaaattaattatcc |
47523683 |
T |
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