View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4286_high_2 (Length: 411)
Name: NF4286_high_2
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4286_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 33217150 - 33216902
Alignment:
| Q |
24 |
catttgtaagactgtttggaagaatttatnnnnnnnncaacttataaaagattcatatgatattttcatcttattgataaccgcctatggagcttattta |
123 |
Q |
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| T |
33217150 |
catttgtaagactgtttggaagaatttataaaaaaaacaacttataacagattcatgtgatattttcatcttattgataaccgcttatggagcttattta |
33217051 |
T |
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| Q |
124 |
catatgctttccagaatagcttgtgaaaataac---------atataaaagcatatttattttcttttatctttggtattgaaataacttctacataagg |
214 |
Q |
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| T |
33217050 |
catatgctttccagaatagcttgtgaacataacgtgtaacttatataaaagcatatttattttcttttatctttggtattgaaataacttctacataagg |
33216951 |
T |
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| Q |
215 |
acttatatgataattgcttatactatatccaaacaaagcctaaaagttt |
263 |
Q |
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| T |
33216950 |
acttatatgataattgcttatactatatccaaacaaagcctaaaagttt |
33216902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 33216830 - 33216754
Alignment:
| Q |
335 |
tactttgcagctgaaccagatatctgagacttcttcttctcattcaaaggatttgtttgatctttcgcaacagaacc |
411 |
Q |
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| T |
33216830 |
tactttgcagctgaaccagatatctgagacttcttcttctcgttcaaaggatttgtttgatctttcgcaacagaacc |
33216754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 31668790 - 31668845
Alignment:
| Q |
186 |
tttggtattgaaataacttctacataaggacttatatgataattgcttatactata |
241 |
Q |
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| T |
31668790 |
tttgttatagaaatagcttatacataagcacttatatgataattgcttatgctata |
31668845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 3217305 - 3217350
Alignment:
| Q |
196 |
aaataacttctacataaggacttatatgataattgcttatactata |
241 |
Q |
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| T |
3217305 |
aaatagcttatacataagcacttatatgataatcgcttatactata |
3217350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 32171600 - 32171560
Alignment:
| Q |
2 |
tgaacttatttacagacataagcatttgtaagactgtttgg |
42 |
Q |
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| T |
32171600 |
tgaacttatttactgacataagcatttgtgagactggttgg |
32171560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 12972816 - 12972766
Alignment:
| Q |
191 |
tattgaaataacttctacataaggacttatatgataattgcttatactata |
241 |
Q |
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|||||||||| ||| |||||||| ||||||||||||| ||||||| ||||| |
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| T |
12972816 |
tattgaaatagcttatacataagcacttatatgataaatgcttatgctata |
12972766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 2400126 - 2400072
Alignment:
| Q |
181 |
ttatctttggtattgaaataacttctacataaggacttatatgataattgcttat |
235 |
Q |
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||||||||| ||| |||| ||||| |||||||| |||||||||||||||| |||| |
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| T |
2400126 |
ttatctttgttatagaaacaacttatacataagcacttatatgataattgtttat |
2400072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 34927092 - 34927046
Alignment:
| Q |
6 |
cttatttacagacataagcatttgtaagactgtttggaagaatttat |
52 |
Q |
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| T |
34927092 |
cttatttactgacataagcacttataagactgtttggaagaacttat |
34927046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 35809911 - 35809857
Alignment:
| Q |
173 |
attttcttttatctttggtattgaaataacttctacataaggacttatatgataa |
227 |
Q |
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||||| ||||||||||| || |||||||||| |||||||| ||||||||||||| |
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| T |
35809911 |
attttattttatctttgtcatggaaataacttatacataagcacttatatgataa |
35809857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 5924146 - 5924108
Alignment:
| Q |
2 |
tgaacttatttacagacataagcatttgtaagactgttt |
40 |
Q |
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| T |
5924146 |
tgaacttatttactgacatacgcatttgtaagactgttt |
5924108 |
T |
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