View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4286_high_3 (Length: 400)
Name: NF4286_high_3
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4286_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 44657798 - 44657412
Alignment:
| Q |
1 |
tttttgatccataacattggacttgccgctatttagcctttaacggattaataacttacgtaatgttaccttattcaagaaattaatgttaatttaaatt |
100 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44657798 |
tttttgatccataacattggacttgctgctatctagcttttaacagattaataacttacgtaatgttaccttattcaagaaattaatgttaattcaaatt |
44657699 |
T |
|
| Q |
101 |
gacaaaactcaaataaattagtgagatccataagatgaataatccaagataccaaaattattcatnnnnnnnnttataccatttttctctcaaattttta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
44657698 |
gacaaaactcaaataaattagtgagatccataagatgaataacccaagataccaaaattatttataaaaaaaattataccatttttctctcaaatttttt |
44657599 |
T |
|
| Q |
201 |
attttaggattgagtttttgttaacaacgaaaaaatcggttcagagagaaaaaattagaaagattgtagttgtattacgtagttgaaagagagaagagat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||| |
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| T |
44657598 |
attttaggattgagtttttgttaacaacgaaacaatcggttcagagagaataaattagaaagattgtagttgtactacattgttgaaagagagaagagat |
44657499 |
T |
|
| Q |
301 |
aaggtacaataagagagatagagttggggttagatttgatatcgatggagcatgatagaaaatctaataaaatggtggttaaaattg |
387 |
Q |
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| T |
44657498 |
aaggtacaatgagagagatagagttggggttagatttggtatgggtggagaatgatagaaaatctaatcaaatggtggttaaaattg |
44657412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 45526274 - 45525875
Alignment:
| Q |
1 |
tttttgatccataacattggacttgccgctatttagcctttaacggattaataacttacgtaatgttaccttattcaagaaattaatgttaatttaaatt |
100 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
45526274 |
tttttgatccataacattggacttgctgctatctagcttttaacagattaataacttacgtaatgttatcttattcaagaaattaatgttaattcaaatt |
45526175 |
T |
|
| Q |
101 |
gacaaaactcaaataaattagtgagatccataagatgaataatccaagataccaaaattattcatnnnnnnnn--------------ttataccattttt |
186 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
45526174 |
gacaaaactcaaacaaattagtgagatccataagatgaataacccaagataccaaaattattcataaaaaaataaaaataaaaaaaattataccattttt |
45526075 |
T |
|
| Q |
187 |
ctctcaaatttttaattttaggattgagtttttgttaacaacgaaaaaatcggttcagagagaaaaaattagaaagattgtagttgtattacgtagttga |
286 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45526074 |
ctctcaaattttta-ttttaggattgagtttttgttaacaatgaaacaatcggttcagagagaaaaaattagaaagattgtagttgtactacgtagttga |
45525976 |
T |
|
| Q |
287 |
aagagagaagagataaggtacaataagagagatagagttggggttagatttgatatcgatggagcatgatagaaaatctaataaaatggtggttaaaatt |
386 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45525975 |
aagagagaagagataaggtacaatgagcgagatagagttggggttagatttggtatgggtggagcatgatagaaaatctaatcaaatggtggttaaaatt |
45525876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 49250958 - 49250578
Alignment:
| Q |
1 |
tttttgatccataacattggacttgccgctatttagcctttaacggattaataacttacgtaatgttaccttattcaagaaattaatgttaatttaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49250958 |
tttttgatccataacattggacttgttgcta----gcttttaacggattaataaattacgtaatgttaccttattcaagaaattaatgttaattcaaatt |
49250863 |
T |
|
| Q |
101 |
gacaaaactcaaataaattagtgagatccataagatgaataatccaagataccaaaattattcatnnnnnnnnttataccatttttctctcaaattttta |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||| |
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| T |
49250862 |
gacaaaactcaaacaaattagtgagatccataagatgaataatccaaga---caaaattattcataaaaaaaattataccattttcttc-caaatttttt |
49250767 |
T |
|
| Q |
201 |
attttaggattgagtttttgttaacaacgaaaaaatcggttcagagagaaaaaattagaaagattgtagttgtattacgtagttgaaagagagaagagat |
300 |
Q |
| |
|
||||||| |||||| |||||||||||| |||| ||||||||| |||| |||| ||||| ||| |||||||| ||| ||||||||| ||||||||||| |
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| T |
49250766 |
attttagtattgagcttttgttaacaatgaaacaatcggttccgagaaaaaattagagaaaaattatagttgtactacatagttgaaaaagagaagagat |
49250667 |
T |
|
| Q |
301 |
aaggtacaataagagagatagagttggggttagatttgatatcgatggagcatgatagaaaatctaataaaatggtggttaaaattgat |
389 |
Q |
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|||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49250666 |
aaggtacaatgagagagatagagttggggttagatttgggatgagtggagcatgatagaaaatctaatcaaatggtggttaaaattgat |
49250578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 24625416 - 24625330
Alignment:
| Q |
77 |
aagaaattaatgttaatttaaattgacaaaactcaaataaattagtgagatccataagatgaataatccaagataccaaaattattcat |
165 |
Q |
| |
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||||||| ||||||||||||||||||||||| || | ||| |||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
24625416 |
aagaaatcaatgttaatttaaattgacaaaattccagcaaa--agtgagattcataagatggatgatccaagataccaaaattattcat |
24625330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 38582825 - 38582865
Alignment:
| Q |
288 |
agagagaagagataaggtacaataagagagatagagttggg |
328 |
Q |
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|||||||||||| | ||||||||||||||||| |||||||| |
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| T |
38582825 |
agagagaagagagatggtacaataagagagattgagttggg |
38582865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 5355566 - 5355471
Alignment:
| Q |
70 |
cttattcaagaaattaatgttaatttaaattgacaaaactcaaataaattagtgagatccataagatgaataatccaagataccaaaattattcat |
165 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| || | |||| ||||||||| |||||||| || ||| |||||| ||| | ||||||| |
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|
| T |
5355566 |
cttattcaagaaattaatgttaattcaaattgacaaaattccagcaaatcagtgagatcgataagatgcatgatctaagatatcaatagtattcat |
5355471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 5355395 - 5355308
Alignment:
| Q |
257 |
agaaagattgtagttgtattacgtagttgaaagaga--gaagagataaggtacaataagagagatagagttggggttagatttgatat |
342 |
Q |
| |
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||||||||||| |||||||| | |||||| |||||| ||||||| ||||| |||| |||| |||| ||||| ||||||||||||||| |
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| T |
5355395 |
agaaagattgttgttgtatttcatagttggaagagaaagaagagagaaggtgcaatgagagggataaagttgaggttagatttgatat |
5355308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 42862724 - 42862685
Alignment:
| Q |
70 |
cttattcaagaaattaatgtt--aatttaaattgacaaaa |
107 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
42862724 |
cttattcaagaaattaatgttcaaatttaaattgacaaaa |
42862685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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