View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4286_low_1 (Length: 704)
Name: NF4286_low_1
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4286_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 211 - 594
Target Start/End: Complemental strand, 30212257 - 30211874
Alignment:
| Q |
211 |
gaaagaacacaagtatatggttattatttacttatttttctactattattttcttttgacagaacaatttatgttgatttaaaagaaaaataaaccaaca |
310 |
Q |
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| T |
30212257 |
gaaagaacacaagtatatggttattatttacttatttttctactattattttcttttgacagaacaatttatgttgatttaaaagaaaaataaaccaaca |
30212158 |
T |
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| Q |
311 |
tcaatattgtgtctcaatccaatgttttgggtgaactaatgttatcaaaagcatgaataaactctaaattctcttttacggtttgataatttaatattcc |
410 |
Q |
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| T |
30212157 |
tcaatattgtgtctcaatccaatgtcttgggtgaactaatgttatcaaaagcatgaataaactctaacttctcttttacggtttgataatttaatattcc |
30212058 |
T |
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| Q |
411 |
taaaagaattatctaatgaacaacgggttacaaaacctaagattagtagtgatttattctggaattcaaatcaatattatttatttgcaagtagtctcaa |
510 |
Q |
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| T |
30212057 |
taaaagaattatctaatgaacaacgggttacaaaacctaagattagtagtgatttattctggaattcaaatcaatattatttatttgcaagtagtatcaa |
30211958 |
T |
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| Q |
511 |
atgcatttgatttggtttagtggatgagtaattgaagtagtataagccttagacatgagtttgaaactagtgttatacgttttt |
594 |
Q |
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| T |
30211957 |
atgcatttgatttggtttagtggatgagtaattgaagtagtataagccttagacatgagtttgaaactagtgttatacgttttt |
30211874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 631 - 693
Target Start/End: Complemental strand, 30211551 - 30211489
Alignment:
| Q |
631 |
tagcagcattaaaagtccatttggaaaatttaacaaacattaaaattcaaatgtcacaggttc |
693 |
Q |
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| T |
30211551 |
tagcagcattaaaagtccatttggaaaatttaacaaacattcaaattcaaatgtcaccggttc |
30211489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 578 - 631
Target Start/End: Complemental strand, 30211858 - 30211805
Alignment:
| Q |
578 |
tagtgttatacgtttttagcatgtattaaaaaatataagtctaccaaatataat |
631 |
Q |
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| T |
30211858 |
tagtgttatacgtttttatcatgtattgaaaaataaaagtctaccaaatataat |
30211805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 21583705 - 21583538
Alignment:
| Q |
30 |
ttattcttgtacaaaaataa-ctgcagtttacgaactaaaataatagtttagataataattaatcattgatnnnnnnnnnttatattgaaaactatacca |
128 |
Q |
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| T |
21583705 |
ttattcttgtacaaaaaaaaactgcaatttacgacctaaaataatagtttagataataattaattattgataaaaaaaaatcatattgaaaactatacta |
21583606 |
T |
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| Q |
129 |
acagtttacgatctaaaataatgtactacagtttacttgttcaaaagtataataacacagccatatca |
196 |
Q |
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| T |
21583605 |
acagtttacgatctaaaataatgtactacaatttacttgttcaaaagtataataacacagccatatca |
21583538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 39711460 - 39711501
Alignment:
| Q |
485 |
tattatttatttgcaagtagtctcaaatgcatttgatttggt |
526 |
Q |
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| T |
39711460 |
tattatttgtttgcaagtaatatcaaatgcatttgatttggt |
39711501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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