View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4286_low_11 (Length: 289)

Name: NF4286_low_11
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4286_low_11
NF4286_low_11
[»] chr3 (1 HSPs)
chr3 (10-289)||(34239916-34240195)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 34240195 - 34239916
Alignment:
Q  10 catcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaacacttattagcctccttaaacacaacaagaaggagcatgaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34240195 catcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaacacttattagcctccttaaacacaacaagaaggagcatgaa 34240096  T
Q  110 caacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttcag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34240095 caacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttcag 34239996  T
Q  210 catcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34239995 catcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatt 34239916  T

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