View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4286_low_2 (Length: 428)
Name: NF4286_low_2
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4286_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 53556667 - 53556539
Alignment:
| Q |
11 |
catcatcaccactggaaaccctctcccccatccatcggcggcaaccaccaagcctatccctgaatccaccgacgttctcccccttctgctccacacatct |
110 |
Q |
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|||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
53556667 |
catcatcaccaccggcaaccctctcccccatccatcggcggcgaccaccaagcctctccctcaatccactgacgttctcccccttctgctccacacatct |
53556568 |
T |
|
| Q |
111 |
cctcatacaactcaaccactctcttcttc |
139 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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| T |
53556567 |
cctcacacaactcaaccactctcttcttc |
53556539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 43399797 - 43399860
Alignment:
| Q |
27 |
aaccctctcccc-catccatcggcggcaaccaccaagcctatccctgaatccaccgacgttctc |
89 |
Q |
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|||||||||||| ||||||| |||||| |||||||||||| ||||| ||||||| ||||||||| |
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|
| T |
43399797 |
aaccctctccccccatccattggcggcgaccaccaagcctctcccttaatccactgacgttctc |
43399860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 38681418 - 38681546
Alignment:
| Q |
11 |
catcatcaccactggaaaccctctcccc-catccatcggcggcaaccaccaagcctatccctgaatccaccgacgttctcccccttctgctccacacatc |
109 |
Q |
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|||||||||||| | |||||||||||| |||||||||||||| |||||||||||| ||||| || ||||||| |||||||||| ||||||||||| ||| |
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| T |
38681418 |
catcatcaccaccgtcaaccctctccccccatccatcggcggcgaccaccaagcctctccctcaagccaccgaggttctcccccctctgctccacatatc |
38681517 |
T |
|
| Q |
110 |
tcctcatacaactcaaccactctcttcttc |
139 |
Q |
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|||||| || |||||||||||||||||||| |
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|
| T |
38681518 |
tcctcacac-actcaaccactctcttcttc |
38681546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 38682671 - 38682799
Alignment:
| Q |
11 |
catcatcaccactggaaaccctctcccc-catccatcggcggcaaccaccaagcctatccctgaatccaccgacgttctcccccttctgctccacacatc |
109 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||||||||| |||||||||||| ||||| || ||||||| |||||||||| ||||||||||| ||| |
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|
| T |
38682671 |
catcatcaccaccgtcaaccctctccccccatccatcggcggcgaccaccaagcctctccctcaagccaccgaggttctcccccctctgctccacatatc |
38682770 |
T |
|
| Q |
110 |
tcctcatacaactcaaccactctcttcttc |
139 |
Q |
| |
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|||||| || |||||||||||||||||||| |
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| T |
38682771 |
tcctcacac-actcaaccactctcttcttc |
38682799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 16395908 - 16395973
Alignment:
| Q |
27 |
aaccctctcccccatccatcggcggcaaccaccaagcctatccctgaatccaccgacgttctcccc |
92 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||| | ||| |||||| ||||||||||||| |
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|
| T |
16395908 |
aaccctctcccccattcatcggcggcaaccaccaaacctctgcctcaatccatcgacgttctcccc |
16395973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 16665390 - 16665499
Alignment:
| Q |
29 |
ccctctcccccatccatcggcggcaaccaccaagcctatccctgaatccaccgacgttctcccccttctgctccacacatctcctcatacaactcaacca |
128 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||| ||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||| || || |
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| T |
16665390 |
ccctttcctccatccaccggcggcaaccaccac-cctctccctccctccactgacgtcctcccccttctactccacacatctcctcacacaacttaa-ca |
16665487 |
T |
|
| Q |
129 |
ctctcttcttca |
140 |
Q |
| |
|
|||||||||||| |
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|
| T |
16665488 |
ctctcttcttca |
16665499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 40163004 - 40163087
Alignment:
| Q |
11 |
catcatcaccactggaaaccctctccccc-atccatcggcggcaaccaccaagcctatccctgaatccaccgacgttctccccc |
93 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||| ||||||||| |||||||| | | ||||| ||||| ||||||||||||||| |
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|
| T |
40163004 |
catcatcaccaccgccaaccctctccccccatctatcggcggcgaccaccaaacttctccctcaatcctccgacgttctccccc |
40163087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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