View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4286_low_5 (Length: 373)
Name: NF4286_low_5
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4286_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 1330505 - 1330162
Alignment:
| Q |
19 |
ggagtagggagacaagaaataagcggcaccggaatggtcttttgcttatttggcacgcggcactttgggttatttggaatgctggaaatagcttaatctt |
118 |
Q |
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| T |
1330505 |
ggagtagggagacgagaaataagctgcaccggaatggtcttttgcttatttggcacgcggcactttgggttatttggaatgctagaaatagcttaatctt |
1330406 |
T |
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| Q |
119 |
taagaatgtggtaaggagggtggatgaattggtggaggaagtgaaggtcttggaggtgggtgttggatagaactaaagtgtcggcatgtttattctatga |
218 |
Q |
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| T |
1330405 |
taagaatgtggtaaggagggtggatgaattggtggaggaagtgaaggtcttggagttgggtgttggatagaactaaagtgtcggcatgtttattctatga |
1330306 |
T |
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| Q |
219 |
atggtgttggaacccaaaaggatgccttacctgataattggagttttttctcgagtttctgtgtatattgacagcgctgttgctggtgtgtgtcgtggag |
318 |
Q |
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| T |
1330305 |
atggtgttggaacccaaaaggatgccttacctgataattggagttttttctcgagtttctgtgtatattgacagcgctgttgctggtgtgtgtcgtggag |
1330206 |
T |
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| Q |
319 |
gagttttttgtgagtcggtgggtgctgtcagctcctactgctgg |
362 |
Q |
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| T |
1330205 |
gagatttttgtgggtcggtgggtgctttcagctcctactgctgg |
1330162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 29083197 - 29083229
Alignment:
| Q |
214 |
tatgaatggtgttggaacccaaaaggatgcctt |
246 |
Q |
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| T |
29083197 |
tatgaatggtgttggaacccaaaagaatgcctt |
29083229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 43 - 362
Target Start/End: Complemental strand, 14247698 - 14247373
Alignment:
| Q |
43 |
ggcaccggaatggtcttttgcttatttggcacgcggcactttgggttatttggaatgctggaaatagcttaatctttaagaatgtggtaaggagggtgga |
142 |
Q |
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| T |
14247698 |
ggcaccggaatggtctttggcttatttggcacgcagcactttaagttatttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtgga |
14247599 |
T |
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| Q |
143 |
tgaattggtggaggaagtgaag-----gtcttggaggtgggtgttggatagaactaaagtgtcggcatgtttattctatgaatggtgttggaacccaaaa |
237 |
Q |
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| T |
14247598 |
tgaattggtggaggaagtgaaggtactgtcttggaggtgggtgttggatagaactaaagtgccaacgtgtttgttctatgaatggtgttggaacccaaaa |
14247499 |
T |
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| Q |
238 |
ggatgccttacctgataattgga-gttttttctcgagtttctgtgtatattgacagcgctgttgctggtgtgtgtcgtggaggagttttttgtgagtcgg |
336 |
Q |
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| T |
14247498 |
gaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaatattgacagcgctgttgctggtgtgtgtcatggaggagttttatgtgggtccg |
14247399 |
T |
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| Q |
337 |
tgggtgctgtcagctcctactgctgg |
362 |
Q |
| |
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| T |
14247398 |
tgggtgctgtcagctcctactgctgg |
14247373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 9850733 - 9850600
Alignment:
| Q |
33 |
agaaataagcggcaccggaatggtcttttgcttatttggcacgcggcactttgggttatttggaatgctggaaatagcttaatctttaagaatgtggtaa |
132 |
Q |
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| T |
9850733 |
agaaataaacggcactggaatggtctttggcttatttggcacacggcactttgggttatttggaattctaggaatagcttaatctttatgaatgtggtaa |
9850634 |
T |
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| Q |
133 |
ggagggtggatgaattggtggaggaagtgaaggt |
166 |
Q |
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| T |
9850633 |
agagggtggaggaattggcggaggaagtgaaggt |
9850600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 9850424 - 9850274
Alignment:
| Q |
212 |
tctatgaatggtgttggaacccaaaaggatgccttacctgataattggagttttttc-tcgagtttctgtgtatattgacagcgctgttgctggtgtgtg |
310 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| ||| ||||||| |||||| |||||| | || |
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| T |
9850424 |
tctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggagttttttcctcgagtttcagtgaatattgatagcgctattgctgttacatg |
9850325 |
T |
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| Q |
311 |
tcgtggaggagttttttgtgagtcggtgggtgctgtcagctcctactgctg |
361 |
Q |
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| T |
9850324 |
ccgtggaggagttttctgtgggttggtgggtgctgtcagctcctactgctg |
9850274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 7701561 - 7701528
Alignment:
| Q |
205 |
tgtttattctatgaatggtgttggaacccaaaag |
238 |
Q |
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| T |
7701561 |
tgtttattctatgaatgatgttggaacccaaaag |
7701528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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