View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4286_low_6 (Length: 372)
Name: NF4286_low_6
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4286_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 8676704 - 8677046
Alignment:
| Q |
12 |
caaatcaccatgtaaccacttgaaggattccatgaaaccatttgttttctgaaaaagatctatgatgaaaaacggattgtgtgttttgtgagcaaaggat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8676704 |
caaatcaccatgtaaccacttgaaggattccatgaaaccatttgttttctgaaaaagatctatgatgaaaaacggattgtgtgttttgtgagtaaaggat |
8676803 |
T |
|
| Q |
112 |
tgtcttctcacaaaggagagaaaattatcttctcagaggagagaaaaaattccacttccacttattaatcaagttttgcagtgataggttgcttacttgc |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8676804 |
tgtcttctcacaaaggagagagaattatcttctcagaggagagaaaaaattccacttccacttattaataaagttttgcagtgataggttgcttacttgc |
8676903 |
T |
|
| Q |
212 |
tgctatgatgctaaattgcatccatttgatggttgtacagtcgtgaaccccaaacttatgcctaatcacacaagaaattcaacgggaaaacatgtctgaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8676904 |
tgctatgatgctaaattgcatccatttgatggttgtacactcgtgaaccccaaacttgtgcctaatcacacaagaaattcaacgggaaaacatgtctgaa |
8677003 |
T |
|
| Q |
312 |
tttaaataacgtcaaagtgaacttgacaaaaggatgatggtaa |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8677004 |
tttaaataacgtcaaagtgaacttgacaaaaggatgatggtaa |
8677046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 264 - 354
Target Start/End: Original strand, 8642938 - 8643028
Alignment:
| Q |
264 |
aacttatgcctaatcacacaagaaattcaacgggaaaacatgtctgaatttaaataacgtcaaagtgaacttgacaaaaggatgatggtaa |
354 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8642938 |
aacttgtgcctactcacacaagaaattcaacgggaaaacatgtctgaatttaaataatgtcaaagtgaacttgacaaaaggatgatggtaa |
8643028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 8639928 - 8640001
Alignment:
| Q |
281 |
acaagaaattcaacgggaaaacatgtctgaatttaaataacgtcaaagtgaacttgacaaaaggatgatggtaa |
354 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
8639928 |
acaacaaattcaatggaaaaacatgtctgaatttaaataactttaaagtgaacttgacaaaaggatgatggtaa |
8640001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 8533501 - 8533547
Alignment:
| Q |
297 |
gaaaacatgtctgaatttaaataacgtcaaagtgaacttgacaaaaggatg |
347 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8533501 |
gaaaacatgtctgaatttaaataacg----agtgaacttgacaaaaggatg |
8533547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 8635724 - 8635771
Alignment:
| Q |
295 |
gggaaaacatgtctgaatttaaataacgtcaaagtgaacttgacaaaa |
342 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
8635724 |
gggaaaacatttctgaatttaaataactttaaaatgaacttgacaaaa |
8635771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University