View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4286_low_7 (Length: 364)

Name: NF4286_low_7
Description: NF4286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4286_low_7
NF4286_low_7
[»] chr1 (1 HSPs)
chr1 (31-328)||(45596377-45596694)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 45596377 - 45596694
Alignment:
Q  31 tcaggcgaagttgtgggaaaactttttgaagcggtggattggagaga------------aaagacaagtcaatactatcggcaatgaatgtttattggtt 118  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||            ||||||||| |||||||||||||||||||||||||||||||    
T  45596377 tcaggtgaagttgtgtgaaaactttttgaagcggtagattggagagagaagtgatgagaaaagacaagacaatactatcggcaatgaatgtttattggtt 45596476  T
Q  119 aaggtgtatagtgttgacgagtttcatttatcagctgaacttgaacgaactgtgtaacgtgtcaaaatatttctcaacgtgggcttctacaattcatttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45596477 aaggtgtatagtgttgacgagtttcatttatcagctgaacttgaacgaactgtgtaacgtgtcaaaatatttctcaacgtgggcttctacaattcatttt 45596576  T
Q  219 cataatttctctttattttttgacaggaggg--------tgtgtgacattaatctctcctgtagatggaaagataaaaaacaattcgatcatccattcta 310  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  45596577 cataatttctctttattttttgacaggagggtggggaaatgtgtgacattaatctcttgtgtagatggaaagataaaaaacaattcgatcatccattcta 45596676  T
Q  311 tgctgtcttccaatagta 328  Q
    ||||||||||||||||||    
T  45596677 tgctgtcttccaatagta 45596694  T

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