View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287-Insertion-12 (Length: 259)
Name: NF4287-Insertion-12
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287-Insertion-12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 95 - 259
Target Start/End: Complemental strand, 35356381 - 35356219
Alignment:
| Q |
95 |
aatgagcaatactatgtacgcagtaggcggggtttcttttttctattttgggtttaatttcataataaatgcattccaaaattaaattaattgtccaaac |
194 |
Q |
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| T |
35356381 |
aatgagcaatactatgtacgcagtaggcggg-tttcttttttctattttgggtataattccataataaatgcattccaaaattaaattaattgtccaaac |
35356283 |
T |
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| Q |
195 |
aatatttagtgattcctaaaatattagaaaaattccattaccagtgctaacgttaaagatagact |
259 |
Q |
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| T |
35356282 |
aatatttagtgattcct-aaatattagaaaaattccattaccagtgctaacgttaaagatagact |
35356219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 35351226 - 35351072
Alignment:
| Q |
95 |
aatgagcaatactatgtacgcagtaggcggggtttcttttttctattttgggtttaatttcataataaatgcattccaaaattaaattaattgtccaaac |
194 |
Q |
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| T |
35351226 |
aatgaacaataatatgtacgcagtaagcagg-tttgttttttctattttgggtttattttcataataaatgcattccaaaattaaattaatcgtccaaac |
35351128 |
T |
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| Q |
195 |
aatatttagtgattcctaaaatattagaaaaattccattaccagtgctaacgttaaa |
251 |
Q |
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| T |
35351127 |
aatatttaatgattcctaaaa-attagaaaaaatccatttccagtgctaacgttaaa |
35351072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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