View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287-Insertion-5 (Length: 187)
Name: NF4287-Insertion-5
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 19083402 - 19083220
Alignment:
| Q |
5 |
aattcttacatgtttaactcaacttttcatacataaattgattcctaaaacactttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
104 |
Q |
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| T |
19083402 |
aattcttacatgtttaactcaacttttcatacataaattgattcctaaaacgctttacttcatctcgttcatgtttaacccaacttttcaaacaagtaag |
19083303 |
T |
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| Q |
105 |
aatatgtatgataatttagtttagccatcttgttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
187 |
Q |
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| T |
19083302 |
aatatgtatgataatttagtttagccatcttgttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
19083220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 4e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 4e-92
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 36758563 - 36758381
Alignment:
| Q |
5 |
aattcttacatgtttaactcaacttttcatacataaattgattcctaaaacactttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
104 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36758563 |
aattcttacatgtttaacacaacttttcatacataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
36758464 |
T |
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| Q |
105 |
aatatgtatgataatttagtttagccatcttgttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
187 |
Q |
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| T |
36758463 |
aatatgtatgataatttagtttagccatcttgttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
36758381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 4e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 4e-92
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 40109709 - 40109527
Alignment:
| Q |
5 |
aattcttacatgtttaactcaacttttcatacataaattgattcctaaaacactttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40109709 |
aattcttacatgtttaactcaacttttcatacataaatgaattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
40109610 |
T |
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| Q |
105 |
aatatgtatgataatttagtttagccatcttgttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
187 |
Q |
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| T |
40109609 |
aatatgtatgataatttagtttagccatcttgttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
40109527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 23302906 - 23303057
Alignment:
| Q |
36 |
cataaattgattcctaaaacactttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
135 |
Q |
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| T |
23302906 |
cataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
23303005 |
T |
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| Q |
136 |
gttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
187 |
Q |
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| T |
23303006 |
gttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
23303057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 16149155 - 16149004
Alignment:
| Q |
36 |
cataaattgattcctaaaacactttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
135 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16149155 |
cataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
16149056 |
T |
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| Q |
136 |
gttaatgttttgtgatgtagatttgactataaatttattctaaattttaggt |
187 |
Q |
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| T |
16149055 |
gttaatgttttgcaatgtagatttgactataaatttattctaaattttaggt |
16149004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 6e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 4651754 - 4651652
Alignment:
| Q |
44 |
gattcctaaaacactttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatcttgttaatgt |
143 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |
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| T |
4651754 |
gattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcaccgtgttaatgt |
4651655 |
T |
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| Q |
144 |
ttt |
146 |
Q |
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||| |
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| T |
4651654 |
ttt |
4651652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 4651631 - 4651594
Alignment:
| Q |
150 |
atgtagatttgactataaatttattctaaattttaggt |
187 |
Q |
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| T |
4651631 |
atgtagatttgacgataaatttattctaaattttaggt |
4651594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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