View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287-Insertion-8 (Length: 114)
Name: NF4287-Insertion-8
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287-Insertion-8 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 2e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 3197571 - 3197458
Alignment:
| Q |
1 |
gaaagagttgatacaaacaagtttggttcaagtttctagtgttgactttgatgggagagtcaaaagttgtagagtccatgatttgttgcgtcatataatc |
100 |
Q |
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| T |
3197571 |
gaaagagctgatatatacaagtttggttcaagtttctagtgttggctttgatggaaaagtcaaaagttgtcgagtccatgatttgttgcatcatataatc |
3197472 |
T |
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| Q |
101 |
attaggaaaatgaa |
114 |
Q |
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|||| |||||||| |
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| T |
3197471 |
cttagaaaaatgaa |
3197458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 3309833 - 3309723
Alignment:
| Q |
4 |
agagttgatacaaacaagtttggttcaagtttctagtgttgactttgatgggagagtcaaaagttgtagagtccatgatttgttgcgtcatataatcatt |
103 |
Q |
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| T |
3309833 |
agagttggtacagagaagtttggttcaggtttccagagttggttttgatgggaaagtcaaaagttgtcaagtcaatgatttgttgcaccaggtgatcatt |
3309734 |
T |
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| Q |
104 |
aggaaaatgaa |
114 |
Q |
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| T |
3309733 |
agaaaaatgaa |
3309723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 3201870 - 3201957
Alignment:
| Q |
4 |
agagttgatacaaacaagtttggttcaagtttctagtgttgactttgatgggagagtcaaaagttgtagagtccatgatttgttgcgt |
91 |
Q |
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| T |
3201870 |
agagttgatacaaagaagtttgattcatgtttccaaagttggttttgatgggaaaatcaagagttgtcaagtccataatttgttgcgt |
3201957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 3356566 - 3356479
Alignment:
| Q |
4 |
agagttgatacaaacaagtttggttcaagtttctagtgttgactttgatgggagagtcaaaagttgtagagtccatgatttgttgcgt |
91 |
Q |
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| T |
3356566 |
agagttggtacagagaagtttggttcaggtttccaaacttggctttgatgggaaagttaaaagatgtcaagtccatgatttgttgcgt |
3356479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 3722470 - 3722554
Alignment:
| Q |
4 |
agagttgatacaaacaagtttggttcaagtttctagtgttgactttgatgggagagtcaaaagttgtagagtccatgatttgttg |
88 |
Q |
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| T |
3722470 |
agagttggtacagagaagtttggttcaggtttccaaacttggctttgatgggaaagttaaaagatgtcaagtccatgatttgttg |
3722554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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