View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4287_high_3 (Length: 461)
Name: NF4287_high_3
Description: NF4287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4287_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 14242046 - 14242477
Alignment:
| Q |
11 |
atcatcaataaaaataacgcatacaatacaagcagtgttgtgaaacagaaagcatagttgaatttcaacaaaccgctgttgttctgcgatacgatacacg |
110 |
Q |
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| T |
14242046 |
atcatcaataaaaataacgcatacaatacaagcagtgttgtgaaacagaaagcatagttgaatttcaacaaaccgctgttgttctgcgatacgatacacg |
14242145 |
T |
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| Q |
111 |
atttagcataaagtgttttcaaatagtagctaactagctatagcacttgcatacaagtacatgtgcttatacttattcactaattacaattactagtaca |
210 |
Q |
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| T |
14242146 |
atttagcataaagtgttttcaaatagtagctaactagctatagcacttgcatacaagtacatgtgcttatacttattcactaattacaattactagtaca |
14242245 |
T |
|
| Q |
211 |
gatttaatcataaaattcctcattcctcagatcataaagggatgacacaaccttactaaacgttatgactctgcttccacttctcatgcacttgtgcaca |
310 |
Q |
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| T |
14242246 |
gatttaatcataaaattcctcattcctcagatcataaagggatgacacaaccttactaaacgctatgactctgcttccacttctcatgcacttgtgcaca |
14242345 |
T |
|
| Q |
311 |
tggaatctaagccacttgatgtgattatgcctataaactaggttgttagagaagttgttcttagaatttcgattgggctctttacaagtgaggactgcct |
410 |
Q |
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| T |
14242346 |
tggaatctaagccacttgatgtgattatgcctataaactaggttgttagagaagttgttcttagaatttcgattgggctctttataagtgaggactgcct |
14242445 |
T |
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| Q |
411 |
ccacttataaacagaatgtcgggtcatatctc |
442 |
Q |
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| T |
14242446 |
ccacttataaacaggatgtcgggtcatatctc |
14242477 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 27309617 - 27309653
Alignment:
| Q |
100 |
tacgatacacgatttagcataaagtgttttcaaatag |
136 |
Q |
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| T |
27309617 |
tacgatacacgatttagtataaagtgttgtcaaatag |
27309653 |
T |
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